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from IPython.display import HTML, display
def addHeader(level, text):
display( HTML('''<h%(level)d>%(text)s</h%(level)d>''' % {'level':level, 'text':text}) )
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addHeader(1, 'Singularity Report')
addHeader(2, "Run: %s" % config['RUN' ])
addHeader(2, "Chromosome: %s" % config['chromosome' ])
addHeader(2, "Scaffold: %s" % config['scaffold' ])
if BAC_MODE:
addHeader(3, "BAC: %s" % config['BAC' ])
addHeader(3, "BAC coord start: %s" % config['BAC_coord_start'])
addHeader(3, "BAC coord end: %s" % config['BAC_coord_end' ])
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print "Config"
for cfg in sorted(config.keys()):
print "\t%-15s: %s" % (cfg, config[cfg])
print "Max Rows : %d" % MAX_ROWS
if NROWS is not None:
print "Number of Rows: %d" % NROWS
#if PARSE_VERBOSE:
print "Column Names"
for col_to_plot in cols_to_plot:
if col_to_plot is None: continue
print "\t", col_to_plot[0]