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%matplotlib inline
%load_ext autoreload
%autoreload 2
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import os.path as op
wf_path = '/home/oesteban/tmp/mriqc-newcircle/work/workflow_enumerator/funcMRIQC/'
in_fft = op.join(wf_path, 'ComputeIQMs/_in_file_..home..oesteban..Data..example_artifacts_dataset..sub-ben01'
'..func..sub-ben01_task-unknown_bold.nii.gz/SpikesFinderFFT/sub-ben01_task-unknown_bold_zsfft.nii.gz')
in_file = op.join(wf_path, '_in_file_..home..oesteban..Data..example_artifacts_dataset..sub-ben01..func..sub-ben01_'
'task-unknown_bold.nii.gz/reorient_and_discard/sub-ben01_task-unknown_bold.nii.gz')
in_spikes = op.join(wf_path, 'ComputeIQMs/_in_file_..home..oesteban..Data..example_artifacts_dataset..sub-ben01..func..'
'sub-ben01_task-unknown_bold.nii.gz/SpikesFinderFFT/sub-ben01_task-unknown_bold_spikes.tsv')
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in_fft = op.join(wf_path, 'ComputeIQMs/_in_file_..home..oesteban..Data..circle-tests..sub-ds205s09'
'..func..sub-ds205s09_task-view_acq-LR_run-02_bold.nii.gz/SpikesFinderFFT/sub-ds205s09_task-view_acq-LR_run-02_bold_zsfft.nii.gz')
in_file = op.join(wf_path, '_in_file_..home..oesteban..Data..circle-tests..sub-ds205s09..func..sub-ds205s09_'
'task-view_acq-LR_run-02_bold.nii.gz/reorient_and_discard/sub-ds205s09_task-view_acq-LR_run-02_bold.nii.gz')
in_spikes = op.join(wf_path, 'ComputeIQMs/_in_file_..home..oesteban..Data..circle-tests..sub-ds205s09'
'..func..sub-ds205s09_task-view_acq-LR_run-02_bold.nii.gz/SpikesFinderFFT/sub-ds205s09_task-view_acq-LR_run-02_bold_spikes.tsv')
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from mriqc.viz import utils as mvu
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import numpy as np
spikes_list = [tuple(i) for i in np.atleast_2d(np.loadtxt(in_spikes, dtype=int)).tolist()]
spikes_list += [(5, 14)]
mvu.plot_spikes(in_file, in_fft, spikes_list)
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%matplotlib inline
%load_ext autoreload
%autoreload 2
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import os.path as op
data_path = '/home/oesteban/Data/ABIDE/sub-50465/anat/sub-50465_T1w.nii.gz'
data_path = '/home/oesteban/tmp/mriqc-newcircle/work/workflow_enumerator/funcMRIQC/_in_file_..home..oesteban..Data..example_artifacts_dataset..sub-ben04..func..sub-ben04_task-unknown_bold.nii.gz/compute_tsnr/stdev.nii.gz'
#data_path = '/home/oesteban/Data/rewardBeastBIDS2/sub-119/func/sub-119_task-rest_sbref.nii.gz'
#data_path ='/home/oesteban/tmp/mriqc-newcircle/work/workflow_enumerator/funcMRIQC/_in_file_..home..oesteban..Data..circle-tests..sub-ds003s03..func..sub-ds003s03_task-rhymejudgment_bold.nii.gz/compute_tsnr/stdev.nii.gz'
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from mriqc.viz import utils as mvu
mvu.plot_mosaic(data_path, cmap='viridis')
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