In [1]:
import os
import sys
import glob
root_folder = os.path.dirname(os.getcwd())
sys.path.append(root_folder)
In [2]:
from ResoFit._utilities import Layer
from ResoFit.calibration import Calibration
from ResoFit.fitresonance import FitResonance
In [3]:
%matplotlib notebook
In [4]:
# Global parameters
energy_min = 7
energy_max = 300
energy_step = 0.01
In [5]:
# Input sample name or names as str, case sensitive
layer_1 = 'U'
thickness_1 = 0.018
density_1 = None
layer_2 = 'Gd'
thickness_2 = 0.015
density_2 = None
layers = Layer()
layers.add_layer(layer=layer_1, thickness_mm=thickness_1, density_gcm3=density_1)
layers.add_layer(layer=layer_2, thickness_mm=thickness_2, density_gcm3=density_2)
In [6]:
folder = 'data/IPTS_19558/reso_data_19558'
data_file = 'spheres.csv'
spectra_file = 'Image002_Spectra.txt'
database = 'ENDF_VIII'
image_start = 300 # Can be omitted or =None
image_end = None # Can be omitted or =None
norm_to_file = None # 'sphere_background_1.csv'
# norm_to_file = 'sphere_background_1.csv'
baseline = True
each_step = False
baseline_deg = 3
norm_factor = 1
source_to_detector_m = 16.43 # 16#16.445359069030175#16.447496101100739
offset_us = 2.7 # 0#2.7120797253959119#2.7355447625559037
# x_type = 'lambda'
# x_type = 'energy'
x_type = 'number'
# x_type = 'time'
# y_type = 'transmission'
y_type = 'attenuation'
In [9]:
# Calibrate source_to_detector and/or delay
calibration = Calibration(data_file=data_file,
spectra_file=spectra_file,
layer=layers,
energy_min=energy_min,
energy_max=energy_max,
energy_step=energy_step,
folder=folder,
exp_source_to_detector_m=source_to_detector_m,
exp_offset_us=offset_us,
database=database,
baseline=baseline,
baseline_deg=baseline_deg,
x_type=x_type,
y_type=y_type
)
calibration.experiment.norm_to(file=norm_to_file, norm_factor=norm_factor)
calibration.experiment.slice(start=image_start, end=image_end)
calibrate_result = calibration.calibrate(source_to_detector_m=source_to_detector_m,
offset_us=offset_us,
vary='all',
each_step=each_step)
calibration.index_peak(thres_exp=0.15, min_dist_exp=20, min_dist_map=15, thres_map=0.12, rel_tol=0.01)
+----------------- Calibration -----------------+
Params before:
Name Value Min Max Stderr Vary Expr Brute_Step
offset_us 2.7 -inf inf None True None None
source_to_detector_m 16.43 -inf inf None True None None
Params after:
Name Value Min Max Stderr Vary Expr Brute_Step
offset_us 2.707 -inf inf 0.007068 True None None
source_to_detector_m 16.43 -inf inf 0.0007906 True None None
Calibration chi^2 : 14.32337574619115
/Users/y9z/anaconda3/envs/py37/lib/python3.7/site-packages/peakutils/peak.py:246: UserWarning:
At least 3 points required for Gaussian fitting
In [10]:
calibration.analyze_peak(report=False, fit_model='Lorentzian') # ['Gaussian', 'Lorentzian']
+------------ Peak analysis ------------+
Lorentzian peak fitting:
ele_name center_val fwhm_val
0 U 516.261191 3.037647
1 U 663.778653 3.395883
2 U 710.172239 3.530453
3 U 890.721693 4.020460
4 U 1202.878333 7.292614
5 Gd 1548.923366 12.148991
6 U 1602.526531 12.171793
7 Gd 1789.317995 30.861473
In [11]:
calibration.plot(y_type=y_type,
x_type=x_type,
# t_unit='ns',
# before=True,
# interp=True,
mixed=True,
table=False,
peak_exp='indexed',
peak_height=True,
index_level='ele',
# peak_id='all',
logx=False,
)
Out[11]:
<matplotlib.axes._subplots.AxesSubplot at 0x122196810>
In [14]:
u_num = list(calibration.experiment.o_peak.peak_map_indexed_dict['peak_map_indexed'][layer_1]['peak_span']['x_num'])
print(u_num)
[514, 515, 516, 517, 518, 662, 663, 664, 665, 666, 708, 709, 710, 711, 712, 888, 889, 890, 891, 892, 893, 1199, 1200, 1201, 1202, 1203, 1204, 1205, 1206, 1207, 1596, 1597, 1598, 1599, 1600, 1601, 1602, 1603, 1604, 1605, 1606, 1607, 1608, 1609]
In [15]:
gd_num = list(calibration.experiment.o_peak.peak_map_indexed_dict['peak_map_indexed'][layer_2]['peak_span']['x_num'])
print(gd_num)
[1542, 1543, 1544, 1545, 1546, 1547, 1548, 1549, 1550, 1551, 1552, 1553, 1554, 1555, 1773, 1774, 1775, 1776, 1777, 1778, 1779, 1780, 1781, 1782, 1783, 1784, 1785, 1786, 1787, 1788, 1789, 1790, 1791, 1792, 1793, 1794, 1795, 1796, 1797, 1798, 1799, 1800, 1801, 1802, 1803, 1804, 1805]
In [17]:
def fill_zeros_to_num_str(num_str, tot_digits=5):
while len(num_str)<tot_digits:
num_str = '0' + num_str
return num_str
In [18]:
gd_num_str_list =[fill_zeros_to_num_str(num_str) for num_str in list(map(str, gd_num))]
print(gd_num_str_list)
print(len(gd_num_str_list))
['01542', '01543', '01544', '01545', '01546', '01547', '01548', '01549', '01550', '01551', '01552', '01553', '01554', '01555', '01773', '01774', '01775', '01776', '01777', '01778', '01779', '01780', '01781', '01782', '01783', '01784', '01785', '01786', '01787', '01788', '01789', '01790', '01791', '01792', '01793', '01794', '01795', '01796', '01797', '01798', '01799', '01800', '01801', '01802', '01803', '01804', '01805']
47
In [19]:
u_num_str_list =[fill_zeros_to_num_str(num_str) for num_str in list(map(str, u_num))]
print(u_num_str_list)
print(len(u_num_str_list))
['00514', '00515', '00516', '00517', '00518', '00662', '00663', '00664', '00665', '00666', '00708', '00709', '00710', '00711', '00712', '00888', '00889', '00890', '00891', '00892', '00893', '01199', '01200', '01201', '01202', '01203', '01204', '01205', '01206', '01207', '01596', '01597', '01598', '01599', '01600', '01601', '01602', '01603', '01604', '01605', '01606', '01607', '01608', '01609']
44
In [62]:
dst_dir = '/Users/y9z/Downloads/test'
if os.path.exists(dst_dir) is False:
os.makedirs(dst_dir)
In [67]:
os.path.isdir(dst_dir)
Out[67]:
True
In [68]:
_list_files = glob.glob('/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/*.fits')
In [69]:
_list_files
Out[69]:
['/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00000.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00001.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00002.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00003.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00004.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00005.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00006.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00007.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00008.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00009.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00010.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00011.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00012.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00013.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00014.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00015.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00016.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00017.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00018.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00019.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00020.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00021.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00022.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00023.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00024.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00025.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00026.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00027.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00028.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00029.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00030.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00031.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00032.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00033.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00034.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00035.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00036.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00037.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00038.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00039.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00040.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00041.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00042.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00043.fits',
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'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00048.fits',
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'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00053.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00054.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00055.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00056.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00057.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00058.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00059.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00060.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00061.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00062.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00063.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00064.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00065.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00066.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00067.fits',
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'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00069.fits',
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'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00071.fits',
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'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00073.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00074.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00075.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00076.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00077.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00078.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00079.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00080.fits',
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'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00083.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00084.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00085.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00086.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00087.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00088.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00089.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00090.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00091.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00092.fits',
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'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00094.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00095.fits',
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'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00109.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00110.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00111.fits',
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In [70]:
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In [18]:
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'Image010_00684.fits',
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'Image010_00687.fits',
'Image010_00688.fits',
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'Image010_00720.fits',
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'Image010_00726.fits',
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'Image010_00730.fits',
'Image010_00731.fits',
'Image010_00732.fits',
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'Image010_00736.fits',
'Image010_00737.fits',
'Image010_00738.fits',
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'Image010_00740.fits',
'Image010_00741.fits',
'Image010_00742.fits',
'Image010_00743.fits',
'Image010_00744.fits',
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'Image010_00753.fits',
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'Image010_00759.fits',
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'Image010_00761.fits',
'Image010_00762.fits',
'Image010_00763.fits',
'Image010_00764.fits',
'Image010_00765.fits',
'Image010_00766.fits',
'Image010_00767.fits',
'Image010_00768.fits',
'Image010_00769.fits',
'Image010_00770.fits',
'Image010_00771.fits',
'Image010_00772.fits',
'Image010_00773.fits',
'Image010_00774.fits',
'Image010_00775.fits',
'Image010_00776.fits',
'Image010_00777.fits',
'Image010_00778.fits',
'Image010_00779.fits',
'Image010_00780.fits',
'Image010_00781.fits',
'Image010_00782.fits',
'Image010_00783.fits',
'Image010_00784.fits',
'Image010_00785.fits',
'Image010_00786.fits',
'Image010_00787.fits',
'Image010_00788.fits',
'Image010_00789.fits',
'Image010_00790.fits',
'Image010_00791.fits',
'Image010_00792.fits',
'Image010_00793.fits',
'Image010_00794.fits',
'Image010_00795.fits',
'Image010_00796.fits',
'Image010_00797.fits',
'Image010_00798.fits',
'Image010_00799.fits',
'Image010_00800.fits',
'Image010_00801.fits',
'Image010_00802.fits',
'Image010_00803.fits',
'Image010_00804.fits',
'Image010_00805.fits',
'Image010_00806.fits',
'Image010_00807.fits',
'Image010_00808.fits',
'Image010_00809.fits',
'Image010_00810.fits',
'Image010_00811.fits',
'Image010_00812.fits',
'Image010_00813.fits',
'Image010_00814.fits',
'Image010_00815.fits',
'Image010_00816.fits',
'Image010_00817.fits',
'Image010_00818.fits',
'Image010_00819.fits',
'Image010_00820.fits',
'Image010_00821.fits',
'Image010_00822.fits',
'Image010_00823.fits',
'Image010_00824.fits',
'Image010_00825.fits',
'Image010_00826.fits',
'Image010_00827.fits',
'Image010_00828.fits',
'Image010_00829.fits',
'Image010_00830.fits',
'Image010_00831.fits',
'Image010_00832.fits',
'Image010_00833.fits',
'Image010_00834.fits',
'Image010_00835.fits',
'Image010_00836.fits',
'Image010_00837.fits',
'Image010_00838.fits',
'Image010_00839.fits',
'Image010_00840.fits',
'Image010_00841.fits',
'Image010_00842.fits',
'Image010_00843.fits',
'Image010_00844.fits',
'Image010_00845.fits',
'Image010_00846.fits',
'Image010_00847.fits',
'Image010_00848.fits',
'Image010_00849.fits',
'Image010_00850.fits',
'Image010_00851.fits',
'Image010_00852.fits',
'Image010_00853.fits',
'Image010_00854.fits',
'Image010_00855.fits',
'Image010_00856.fits',
'Image010_00857.fits',
'Image010_00858.fits',
'Image010_00859.fits',
'Image010_00860.fits',
'Image010_00861.fits',
'Image010_00862.fits',
'Image010_00863.fits',
'Image010_00864.fits',
'Image010_00865.fits',
'Image010_00866.fits',
'Image010_00867.fits',
'Image010_00868.fits',
'Image010_00869.fits',
'Image010_00870.fits',
'Image010_00871.fits',
'Image010_00872.fits',
'Image010_00873.fits',
'Image010_00874.fits',
'Image010_00875.fits',
'Image010_00876.fits',
'Image010_00877.fits',
'Image010_00878.fits',
'Image010_00879.fits',
'Image010_00880.fits',
'Image010_00881.fits',
'Image010_00882.fits',
'Image010_00883.fits',
'Image010_00884.fits',
'Image010_00885.fits',
'Image010_00886.fits',
'Image010_00887.fits',
'Image010_00888.fits',
'Image010_00889.fits',
'Image010_00890.fits',
'Image010_00891.fits',
'Image010_00892.fits',
'Image010_00893.fits',
'Image010_00894.fits',
'Image010_00895.fits',
'Image010_00896.fits',
'Image010_00897.fits',
'Image010_00898.fits',
'Image010_00899.fits',
'Image010_00900.fits',
'Image010_00901.fits',
'Image010_00902.fits',
'Image010_00903.fits',
'Image010_00904.fits',
'Image010_00905.fits',
'Image010_00906.fits',
'Image010_00907.fits',
'Image010_00908.fits',
'Image010_00909.fits',
'Image010_00910.fits',
'Image010_00911.fits',
'Image010_00912.fits',
'Image010_00913.fits',
'Image010_00914.fits',
'Image010_00915.fits',
'Image010_00916.fits',
'Image010_00917.fits',
'Image010_00918.fits',
'Image010_00919.fits',
'Image010_00920.fits',
'Image010_00921.fits',
'Image010_00922.fits',
'Image010_00923.fits',
'Image010_00924.fits',
'Image010_00925.fits',
'Image010_00926.fits',
'Image010_00927.fits',
'Image010_00928.fits',
'Image010_00929.fits',
'Image010_00930.fits',
'Image010_00931.fits',
'Image010_00932.fits',
'Image010_00933.fits',
'Image010_00934.fits',
'Image010_00935.fits',
'Image010_00936.fits',
'Image010_00937.fits',
'Image010_00938.fits',
'Image010_00939.fits',
'Image010_00940.fits',
'Image010_00941.fits',
'Image010_00942.fits',
'Image010_00943.fits',
'Image010_00944.fits',
'Image010_00945.fits',
'Image010_00946.fits',
'Image010_00947.fits',
'Image010_00948.fits',
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'Image010_00956.fits',
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'Image010_00960.fits',
'Image010_00961.fits',
'Image010_00962.fits',
'Image010_00963.fits',
'Image010_00964.fits',
'Image010_00965.fits',
'Image010_00966.fits',
'Image010_00967.fits',
'Image010_00968.fits',
'Image010_00969.fits',
'Image010_00970.fits',
'Image010_00971.fits',
'Image010_00972.fits',
'Image010_00973.fits',
'Image010_00974.fits',
'Image010_00975.fits',
'Image010_00976.fits',
'Image010_00977.fits',
'Image010_00978.fits',
'Image010_00979.fits',
'Image010_00980.fits',
'Image010_00981.fits',
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'Image010_00984.fits',
'Image010_00985.fits',
'Image010_00986.fits',
'Image010_00987.fits',
'Image010_00988.fits',
'Image010_00989.fits',
'Image010_00990.fits',
'Image010_00991.fits',
'Image010_00992.fits',
'Image010_00993.fits',
'Image010_00994.fits',
'Image010_00995.fits',
'Image010_00996.fits',
'Image010_00997.fits',
'Image010_00998.fits',
'Image010_00999.fits',
...]
In [47]:
_list_names = [_name.split('.')[0] for _name in _list_files]
In [71]:
_loc_list = []
for _names in _list_files:
_base_name = _names.split('.')[0]
if _base_name[-5:] in gd_num_str_list:
_loc_list.append(_names)
In [72]:
_loc_list
Out[72]:
['/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00489.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00490.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00491.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00492.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00493.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_00494.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_01545.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_01546.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_01547.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_01548.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_01549.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_01550.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_01551.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_01552.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_01553.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_01554.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_01782.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_01783.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_01784.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_01785.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_01786.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_01787.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_01788.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_01789.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_01790.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_01791.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_01792.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_01793.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_01794.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_01795.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_01796.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/Image010_01797.fits']
In [19]:
_list_element = set([_name.split('_')[0].lower() for _name in _list_short_files])
In [20]:
_list_element
Out[20]:
{'image010'}
In [51]:
set([_name.split('.')[1] for _name in _list_short_files])
Out[51]:
{'fits'}
In [49]:
_list_fname=set([_name.split('_')[0] for _name in _list_short_files])
In [50]:
_list_fname
Out[50]:
{'Image000',
'Image001',
'Image002',
'Image003',
'Image004',
'Image005',
'Image006',
'Image007',
'Image008',
'Image009',
'Image010',
'Image011',
'Image012',
'Image013',
'Image014',
'Image015',
'Image016',
'Image017',
'Image018',
'Image019',
'Image020',
'Image021',
'Image022',
'Image023',
'Image024',
'Image025',
'Image026',
'Image027',
'Image028',
'Image029',
'Image030',
'Image031',
'Image032',
'Image033',
'Image034',
'Image035'}
In [100]:
file_name_list_peak = []
new_loc = []
_image_num = 'Image010'
# for _image_num in _list_fname:
for _index in num_str_list:
_full_name = '/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image10/' + _image_num + '_' + _index + '.fits'
_loc_name = '/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/Gd/redo/' + _image_num + '_' + _index + '.fits'
file_name_list_peak.append(_full_name)
new_loc.append(_loc_name)
In [82]:
len(file_name_list_peak)/36 == len(num_str_list)
Out[82]:
False
In [96]:
file_name_list_peak
Out[96]:
['/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image12/Image012_00489.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image12/Image012_00490.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image12/Image012_00491.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image12/Image012_00492.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image12/Image012_00493.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image12/Image012_00494.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image12/Image012_01545.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image12/Image012_01546.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image12/Image012_01547.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image12/Image012_01548.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image12/Image012_01549.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image12/Image012_01550.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image12/Image012_01551.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image12/Image012_01552.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image12/Image012_01553.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image12/Image012_01554.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image12/Image012_01782.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image12/Image012_01783.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image12/Image012_01784.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image12/Image012_01785.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image12/Image012_01786.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image12/Image012_01787.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image12/Image012_01788.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image12/Image012_01789.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image12/Image012_01790.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image12/Image012_01791.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image12/Image012_01792.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image12/Image012_01793.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image12/Image012_01794.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image12/Image012_01795.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image12/Image012_01796.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/angles_redo/image12/Image012_01797.fits']
In [88]:
new_loc
Out[88]:
['/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_00514.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_00515.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_00516.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_00517.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_00518.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_00661.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_00662.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_00663.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_00664.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_00665.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_00666.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_00708.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_00709.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_00710.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_00711.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_00712.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_00713.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_00888.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_00889.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_00890.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_00891.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_00892.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_00893.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_01199.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_01200.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_01201.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_01202.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_01203.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_01204.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_01205.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_01206.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_01207.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_01596.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_01597.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_01598.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_01599.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_01600.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_01601.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_01602.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_01603.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_01604.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_01605.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_01606.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_01607.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_01608.fits',
'/Users/y9z/Documents/Neutron_data/IPTS_19558/resonance_data/CT_runs/U/redo/Image011_01609.fits']
In [57]:
from shutil import copyfile
In [101]:
for i in range(len(new_loc)):
copyfile(src=file_name_list_peak[i], dst=new_loc[i])
In [29]:
_list_element
Out[29]:
{'image000',
'image001',
'image002',
'image003',
'image004',
'image005',
'image006',
'image007',
'image008',
'image009',
'image010',
'image011',
'image012',
'image013',
'image014',
'image015',
'image016',
'image017',
'image018',
'image019',
'image020',
'image021',
'image022',
'image023',
'image024',
'image025',
'image026',
'image027',
'image028',
'image029',
'image030',
'image031',
'image032',
'image033',
'image034',
'image035'}
In [ ]:
Content source: ornlneutronimaging/ResoFit
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