In [1]:

    

%load_ext rpy2.ipython


    

In [4]:

    

%%R
.libPaths()


    

    






[1] "/ebio/abt3_projects/methanogen_host_evo/miniconda3/lib/R/library"

In [5]:

    

%%R
.libPaths('/ebio/abt3_projects/methanogen_host_evo/miniconda3/envs/SIPSim_py3/lib/R/library/')


    

In [10]:

    

%%R
library(dplyr)
library(ggplot2)


    

    




/ebio/abt3_projects/methanogen_host_evo/miniconda3/envs/SIPSim_py3/lib/python3.6/site-packages/rpy2/rinterface/__init__.py:186: RRuntimeWarning: 
Attaching package: ‘dplyr’


  warnings.warn(x, RRuntimeWarning)
/ebio/abt3_projects/methanogen_host_evo/miniconda3/envs/SIPSim_py3/lib/python3.6/site-packages/rpy2/rinterface/__init__.py:186: RRuntimeWarning: The following objects are masked from ‘package:stats’:

    filter, lag


  warnings.warn(x, RRuntimeWarning)
/ebio/abt3_projects/methanogen_host_evo/miniconda3/envs/SIPSim_py3/lib/python3.6/site-packages/rpy2/rinterface/__init__.py:186: RRuntimeWarning: The following objects are masked from ‘package:base’:

    intersect, setdiff, setequal, union


  warnings.warn(x, RRuntimeWarning)

In [11]:

    

%%R
mtcars %>% head


    

    






                   mpg cyl disp  hp drat    wt  qsec vs am gear carb
Mazda RX4         21.0   6  160 110 3.90 2.620 16.46  0  1    4    4
Mazda RX4 Wag     21.0   6  160 110 3.90 2.875 17.02  0  1    4    4
Datsun 710        22.8   4  108  93 3.85 2.320 18.61  1  1    4    1
Hornet 4 Drive    21.4   6  258 110 3.08 3.215 19.44  1  0    3    1
Hornet Sportabout 18.7   8  360 175 3.15 3.440 17.02  0  0    3    2
Valiant           18.1   6  225 105 2.76 3.460 20.22  1  0    3    1

In [12]:

    

%%R
ggplot(mtcars, aes(cyl, mpg)) +
    geom_point()