RNA-Puzzle 13

In [12]:

    

from rna_tools.tools.rna_alignment.rna_alignment import RNAalignment


    

In [13]:

    

alignment = RNAalignment('test_data/rp13/rp13finalX_noSSperSeq_ref.sto')


    

In [14]:

    

alignment.plot()


    

    




Rchie: plot saved to rchie.png






    
Out[14]:

In [15]:

    

alignment


    

    
Out[15]:





SingleLetterAlphabet() alignment with 6 rows and 130 columns
---GGGUCGUGACUGGCGAAC-----------------------...C-- rp13
GCUCUCGCGCGACUGGCGACUUU---------------------...C-- nc9445
---GCGCAGUGACUGACGACGAU---------------------...C-- nzaaox
-ACCUUGCGCAACUGGCGAAUC-CUGGGGCUGCCGCC-GGCAGU...CA- nc3295
-ACCUUGCGCGACUGGCGAAUC-CUGAAGCUGCUUUG-AGCGGC...CAG cp0016
---xxxxxxx----xxxx--------------------------...x-- x

In [ ]: