For callibration run uncomment compensation method 1 sphere
and compensation method measurement 1 tube
In [ ]:
In [1]:
%pylab inline
Populating the interactive namespace from numpy and matplotlib
In [2]:
%run evaltools.ipynb
%run experiments_params.ipynb
%run paper_experiments_params.ipynb
Populating the interactive namespace from numpy and matplotlib
0/4260
Populating the interactive namespace from numpy and matplotlib
/home/mjirik/projects/teigen
/home/mjirik/miniconda2/lib/python2.7/site-packages/IPython/core/magics/pylab.py:161: UserWarning: pylab import has clobbered these variables: ['copy', 'savefig']
`%matplotlib` prevents importing * from pylab and numpy
"\n`%matplotlib` prevents importing * from pylab and numpy"
INFO:teigen.tgmain:Starting Teigen
INFO:teigen.tgmain:Starting Teigen
Using QVariant and QString version 1
['/home/mjirik/projects/teigen/teigen']
Populating the interactive namespace from numpy and matplotlib
Populating the interactive namespace from numpy and matplotlib
0/4260
INFO:teigen.tgmain:Starting Teigen
INFO:teigen.tgmain:Starting Teigen
/home/mjirik/projects/teigen
['/home/mjirik/projects/teigen/teigen']
In [44]:
import matplotlib.pyplot as plt
import pandas as pd
import numpy as np
import os.path as op
from pprint import pprint as pp
import scipy.stats
import seaborn as sns
import sys
pth = op.abspath("../")
print pth
sys.path.insert(0, pth)
import teigen
import itertools
reload(teigen)
print teigen.__path__
import teigen.tb_vtk
reload (teigen.tb_vtk)
/home/mjirik/projects/teigen
['/home/mjirik/projects/teigen/teigen']
Out[44]:
<module 'teigen.tb_vtk' from '/home/mjirik/projects/teigen/teigen/tb_vtk.pyc'>
In [45]:
run_list = [
# == measurement comepenstaion factor estimation
# "compensation method 1 sphere"
# == Paper experiments
# === Dataset1
# "generated volume resolution_mm", # done
# "generated volume isotropy", # one half
# "generated volume radius", # ok
# "generated volume length", # do pulky
# "generated volume element_number anisotropic", # asi ok
# "generated volume noise",
# === Dataset2
# "proof mix",
# === Dataset3
# "element number", # run in the morning
# == Other experiments
# "mix 2", # test quality of compensation proklatě velký
# "mix 5",
# "short",
# "mix 4", # new
# "mix 44",
# "mix 6",
# "mix 7",
# "mix 8",
# "mix 9",
# "mix 10",
# "mix 3",
# "volume fraction overlap",
# "volume fraction overlap 4",
# "porosity",
# "compensation method 5 tubes", # looks good it is used for compensation factor computation - not for paper
]
In [46]:
tg = teigen.tgmain.Teigen()
config = tg.get_default_config()
INFO:teigen.tgmain:Starting Teigen
In [47]:
# pp(config)
# config
In [48]:
tg = teigen.tgmain.Teigen()
if not "configs" in dir():
configs = []
INFO:teigen.tgmain:Starting Teigen
In [ ]:
In [ ]:
In [49]:
configs_list = select_configs(configs, run_list)
# print(configs_list)
# debugllevel info 20
run_configs(configs_list, loglevel=20)
INFO:teigen.tgmain:Starting Teigen
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:23:57.007734
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
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element number cylinder surface
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
/home/mjirik/miniconda2/lib/python2.7/site-packages/ipykernel/__main__.py:28: DtypeWarning: Columns (74) have mixed types. Specify dtype option on import or set low_memory=False.
INFO:teigen.tgmain:time: 0:00:02.274952
INFO:teigen.tgmain:time before volume generate: 0:00:00.024795
INFO:teigen.tgmain:time before volume save: 0:00:00.024795
INFO:teigen.tgmain:time after volume save: 0:00:00.043111
step1 finished
/home/mjirik/miniconda2/lib/python2.7/site-packages/ipykernel/__main__.py:4: DtypeWarning: Columns (74) have mixed types. Specify dtype option on import or set low_memory=False.
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:24:00.973414
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
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element number cylinder volume
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:02.096636
INFO:teigen.tgmain:time before volume generate: 0:00:00.020606
INFO:teigen.tgmain:time before volume save: 0:00:00.020606
INFO:teigen.tgmain:time after volume save: 0:00:00.039711
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:24:04.753529
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
2 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:02.550555
INFO:teigen.tgmain:time before volume generate: 0:00:00.021037
INFO:teigen.tgmain:time before volume save: 0:00:00.021037
INFO:teigen.tgmain:time after volume save: 0:00:00.044107
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:24:09.017921
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
3 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:02.218217
INFO:teigen.tgmain:time before volume generate: 0:00:00.020124
INFO:teigen.tgmain:time before volume save: 0:00:00.020124
INFO:teigen.tgmain:time after volume save: 0:00:00.041847
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:24:12.966218
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
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element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:02.315157
INFO:teigen.tgmain:time before volume generate: 0:00:00.019888
INFO:teigen.tgmain:time before volume save: 0:00:00.019888
INFO:teigen.tgmain:time after volume save: 0:00:00.040918
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:24:16.938630
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
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element number cylinder surface
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:04.976124
INFO:teigen.tgmain:time before volume generate: 0:00:00.020129
INFO:teigen.tgmain:time before volume save: 0:00:00.020129
INFO:teigen.tgmain:time after volume save: 0:00:00.052982
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:24:23.624751
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
6 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:04.962756
INFO:teigen.tgmain:time before volume generate: 0:00:00.020218
INFO:teigen.tgmain:time before volume save: 0:00:00.020218
INFO:teigen.tgmain:time after volume save: 0:00:00.062094
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:24:30.412768
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
7 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:06.205714
INFO:teigen.tgmain:time before volume generate: 0:00:00.020749
INFO:teigen.tgmain:time before volume save: 0:00:00.020749
INFO:teigen.tgmain:time after volume save: 0:00:00.066560
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:24:38.360999
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
8 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:05.714233
INFO:teigen.tgmain:time before volume generate: 0:00:00.020624
INFO:teigen.tgmain:time before volume save: 0:00:00.020624
INFO:teigen.tgmain:time after volume save: 0:00:00.065426
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:24:45.858701
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
9 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:05.657217
INFO:teigen.tgmain:time before volume generate: 0:00:00.027627
INFO:teigen.tgmain:time before volume save: 0:00:00.027627
INFO:teigen.tgmain:time after volume save: 0:00:00.083992
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:24:53.224314
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
10 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:09.263580
INFO:teigen.tgmain:time before volume generate: 0:00:00.021053
INFO:teigen.tgmain:time before volume save: 0:00:00.021053
INFO:teigen.tgmain:time after volume save: 0:00:00.092666
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:25:04.300392
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
11 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:08.916081
INFO:teigen.tgmain:time before volume generate: 0:00:00.019763
INFO:teigen.tgmain:time before volume save: 0:00:00.019763
INFO:teigen.tgmain:time after volume save: 0:00:00.087959
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:25:14.962324
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
12 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
INFO:teigen.tgmain:time: 0:00:11.937385
INFO:teigen.tgmain:time before volume generate: 0:00:00.019924
INFO:teigen.tgmain:time before volume save: 0:00:00.019924
INFO:teigen.tgmain:time after volume save: 0:00:00.099524
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:25:28.672806
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
13 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:10.812461
INFO:teigen.tgmain:time before volume generate: 0:00:00.026635
INFO:teigen.tgmain:time before volume save: 0:00:00.026635
INFO:teigen.tgmain:time after volume save: 0:00:00.115400
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:25:41.284919
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
14 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:10.935639
INFO:teigen.tgmain:time before volume generate: 0:00:00.020612
INFO:teigen.tgmain:time before volume save: 0:00:00.020612
INFO:teigen.tgmain:time after volume save: 0:00:00.102959
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:25:53.988834
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
15 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:15.183835
INFO:teigen.tgmain:time before volume generate: 0:00:00.020441
INFO:teigen.tgmain:time before volume save: 0:00:00.020441
INFO:teigen.tgmain:time after volume save: 0:00:00.114381
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:26:10.933625
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
16 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:15.125550
INFO:teigen.tgmain:time before volume generate: 0:00:00.020024
INFO:teigen.tgmain:time before volume save: 0:00:00.020024
INFO:teigen.tgmain:time after volume save: 0:00:00.115654
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:26:27.918038
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
17 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:20.589847
INFO:teigen.tgmain:time before volume generate: 0:00:00.019849
INFO:teigen.tgmain:time before volume save: 0:00:00.019849
INFO:teigen.tgmain:time after volume save: 0:00:00.137646
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:26:50.328430
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
18 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:18.654772
INFO:teigen.tgmain:time before volume generate: 0:00:00.033563
INFO:teigen.tgmain:time before volume save: 0:00:00.033563
INFO:teigen.tgmain:time after volume save: 0:00:00.151366
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:27:10.765564
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
19 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:18.484283
INFO:teigen.tgmain:time before volume generate: 0:00:00.020155
INFO:teigen.tgmain:time before volume save: 0:00:00.020155
INFO:teigen.tgmain:time after volume save: 0:00:00.135850
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:27:31.085325
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
20 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:25.575699
INFO:teigen.tgmain:time before volume generate: 0:00:00.019766
INFO:teigen.tgmain:time before volume save: 0:00:00.019766
INFO:teigen.tgmain:time after volume save: 0:00:00.162260
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:27:58.647714
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
21 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:25.985171
INFO:teigen.tgmain:time before volume generate: 0:00:00.023015
step1 finished
INFO:teigen.tgmain:time before volume save: 0:00:00.023015
INFO:teigen.tgmain:time after volume save: 0:00:00.176581
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:28:26.852154
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
22 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:47.849450
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023170
INFO:teigen.tgmain:time before volume save: 0:00:00.023170
INFO:teigen.tgmain:time after volume save: 0:00:00.199321
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:29:16.582952
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
23 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:42.805616
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.021436
INFO:teigen.tgmain:time before volume save: 0:00:00.021436
INFO:teigen.tgmain:time after volume save: 0:00:00.200944
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:30:01.383838
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
24 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:42.812239
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.019738
INFO:teigen.tgmain:time before volume save: 0:00:00.019738
INFO:teigen.tgmain:time after volume save: 0:00:00.186501
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:30:46.059438
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
25 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:52.890145
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.019009
INFO:teigen.tgmain:time before volume save: 0:00:00.019009
INFO:teigen.tgmain:time after volume save: 0:00:00.216041
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:31:40.752643
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
26 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:50.903601
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.019737
INFO:teigen.tgmain:time before volume save: 0:00:00.019737
INFO:teigen.tgmain:time after volume save: 0:00:00.213130
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:32:33.516724
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
27 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:01:07.413327
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.019809
INFO:teigen.tgmain:time before volume save: 0:00:00.019809
INFO:teigen.tgmain:time after volume save: 0:00:00.257771
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:33:42.798550
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
28 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:59.604778
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.030882
INFO:teigen.tgmain:time before volume save: 0:00:00.030882
INFO:teigen.tgmain:time after volume save: 0:00:00.415277
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:34:44.797754
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
29 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:59.832597
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.019378
INFO:teigen.tgmain:time before volume save: 0:00:00.019378
INFO:teigen.tgmain:time after volume save: 0:00:00.241651
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:35:46.498023
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
30 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:01:11.192435
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.020840
INFO:teigen.tgmain:time before volume save: 0:00:00.020840
INFO:teigen.tgmain:time after volume save: 0:00:00.282041
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:36:59.671293
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
31 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:01:11.639142
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.030097
INFO:teigen.tgmain:time before volume save: 0:00:00.030097
INFO:teigen.tgmain:time after volume save: 0:00:00.311151
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:38:13.288678
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
32 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:01:37.006102
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.028863
INFO:teigen.tgmain:time before volume save: 0:00:00.028863
INFO:teigen.tgmain:time after volume save: 0:00:00.347446
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:39:52.362825
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
33 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:01:22.992026
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.019411
INFO:teigen.tgmain:time before volume save: 0:00:00.019411
INFO:teigen.tgmain:time after volume save: 0:00:00.363825
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:41:17.380520
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
34 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:01:22.538993
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.019435
INFO:teigen.tgmain:time before volume save: 0:00:00.019435
INFO:teigen.tgmain:time after volume save: 0:00:00.311623
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:42:41.904426
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
35 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:00:25.507216
INFO:teigen.tgmain:time before volume generate: 0:00:00.023390
INFO:teigen.tgmain:time before volume save: 0:00:00.023390
INFO:teigen.tgmain:time after volume save: 0:00:00.056116
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:43:09.017328
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
36 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
INFO:teigen.tgmain:time: 0:00:25.242261
INFO:teigen.tgmain:time before volume generate: 0:00:00.023456
INFO:teigen.tgmain:time before volume save: 0:00:00.023456
INFO:teigen.tgmain:time after volume save: 0:00:00.046930
progess: 0.933333333333
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:43:35.851130
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
37 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.560612
INFO:teigen.tgmain:time before volume generate: 0:00:00.024123
INFO:teigen.tgmain:time before volume save: 0:00:00.024123
INFO:teigen.tgmain:time after volume save: 0:00:00.056424
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:44:04.067845
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
38 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:25.949489
INFO:teigen.tgmain:time before volume generate: 0:00:00.039211
INFO:teigen.tgmain:time before volume save: 0:00:00.039211
INFO:teigen.tgmain:time after volume save: 0:00:00.074941
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:44:31.801091
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
39 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:25.836874
INFO:teigen.tgmain:time before volume generate: 0:00:00.032738
INFO:teigen.tgmain:time before volume save: 0:00:00.032738
INFO:teigen.tgmain:time after volume save: 0:00:00.070632
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:44:59.288623
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
40 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:30.217173
INFO:teigen.tgmain:time before volume generate: 0:00:00.023554
INFO:teigen.tgmain:time before volume save: 0:00:00.023554
INFO:teigen.tgmain:time after volume save: 0:00:00.071247
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:45:31.184839
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
41 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:30.365122
INFO:teigen.tgmain:time before volume generate: 0:00:00.025881
INFO:teigen.tgmain:time before volume save: 0:00:00.025881
INFO:teigen.tgmain:time after volume save: 0:00:00.073581
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:46:03.313474
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
42 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:00:33.032397
INFO:teigen.tgmain:time before volume generate: 0:00:00.023618
INFO:teigen.tgmain:time before volume save: 0:00:00.023618
INFO:teigen.tgmain:time after volume save: 0:00:00.087021
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:46:38.169125
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
43 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:32.121075
INFO:teigen.tgmain:time before volume generate: 0:00:00.023251
INFO:teigen.tgmain:time before volume save: 0:00:00.023251
INFO:teigen.tgmain:time after volume save: 0:00:00.084853
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:47:11.944640
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
44 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:32.925176
INFO:teigen.tgmain:time before volume generate: 0:00:00.024449
INFO:teigen.tgmain:time before volume save: 0:00:00.024449
INFO:teigen.tgmain:time after volume save: 0:00:00.086900
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:47:46.610613
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
45 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:39.094641
INFO:teigen.tgmain:time before volume generate: 0:00:00.024420
INFO:teigen.tgmain:time before volume save: 0:00:00.024420
INFO:teigen.tgmain:time after volume save: 0:00:00.109475
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:48:27.466644
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
46 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:38.701412
INFO:teigen.tgmain:time before volume generate: 0:00:00.039268
INFO:teigen.tgmain:time before volume save: 0:00:00.039268
INFO:teigen.tgmain:time after volume save: 0:00:00.147274
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:49:08.014634
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
47 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:43.465926
INFO:teigen.tgmain:time before volume generate: 0:00:00.023954
INFO:teigen.tgmain:time before volume save: 0:00:00.023954
INFO:teigen.tgmain:time after volume save: 0:00:00.135093
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:49:53.423560
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
48 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:42.268664
INFO:teigen.tgmain:time before volume generate: 0:00:00.024142
INFO:teigen.tgmain:time before volume save: 0:00:00.024142
INFO:teigen.tgmain:time after volume save: 0:00:00.135562
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:50:37.546368
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
49 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:42.438178
INFO:teigen.tgmain:time before volume generate: 0:00:00.030155
INFO:teigen.tgmain:time before volume save: 0:00:00.030155
INFO:teigen.tgmain:time after volume save: 0:00:00.142430
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:51:21.804377
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
50 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
INFO:teigen.tgmain:time: 0:00:51.181911
INFO:teigen.tgmain:time before volume generate: 0:00:00.027473
INFO:teigen.tgmain:time before volume save: 0:00:00.027473
INFO:teigen.tgmain:time after volume save: 0:00:00.163341
progess: 0.933333333333
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:52:14.819166
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
51 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:52.769917
INFO:teigen.tgmain:time before volume generate: 0:00:00.024181
INFO:teigen.tgmain:time before volume save: 0:00:00.024181
INFO:teigen.tgmain:time after volume save: 0:00:00.163762
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:53:09.425039
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
52 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:01.736926
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.037351
INFO:teigen.tgmain:time before volume save: 0:00:00.037351
INFO:teigen.tgmain:time after volume save: 0:00:00.230495
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:54:13.063976
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
53 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:00:59.074277
generate vtk finished
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023315
INFO:teigen.tgmain:time before volume save: 0:00:00.023315
INFO:teigen.tgmain:time after volume save: 0:00:00.192602
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:55:13.934918
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
54 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:56.525257
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023431
INFO:teigen.tgmain:time before volume save: 0:00:00.023431
INFO:teigen.tgmain:time after volume save: 0:00:00.191853
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:56:12.307167
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
55 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:09.543810
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023774
INFO:teigen.tgmain:time before volume save: 0:00:00.023774
INFO:teigen.tgmain:time after volume save: 0:00:00.229441
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:57:23.715368
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
56 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:09.258272
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023396
INFO:teigen.tgmain:time before volume save: 0:00:00.023396
INFO:teigen.tgmain:time after volume save: 0:00:00.226239
INFO:teigen.tgmain:step1_init_datetime2017-10-12 13:58:34.886208
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
57 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:58.150246
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023494
INFO:teigen.tgmain:time before volume save: 0:00:00.023494
INFO:teigen.tgmain:time after volume save: 0:00:00.272172
INFO:teigen.tgmain:step1_init_datetime2017-10-12 14:00:34.926998
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
58 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:44.176027
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023806
INFO:teigen.tgmain:time before volume save: 0:00:00.023806
INFO:teigen.tgmain:time after volume save: 0:00:00.270611
INFO:teigen.tgmain:step1_init_datetime2017-10-12 14:02:20.992308
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
59 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:43.214248
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024345
INFO:teigen.tgmain:time before volume save: 0:00:00.024345
INFO:teigen.tgmain:time after volume save: 0:00:00.274261
INFO:teigen.tgmain:step1_init_datetime2017-10-12 14:04:06.088407
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
60 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:09.962248
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023530
INFO:teigen.tgmain:time before volume save: 0:00:00.023530
INFO:teigen.tgmain:time after volume save: 0:00:00.315057
INFO:teigen.tgmain:step1_init_datetime2017-10-12 14:06:18.101760
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
61 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:10.167476
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023823
INFO:teigen.tgmain:time before volume save: 0:00:00.023823
INFO:teigen.tgmain:time after volume save: 0:00:00.307480
INFO:teigen.tgmain:step1_init_datetime2017-10-12 14:08:30.217597
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
62 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:36.650821
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023511
INFO:teigen.tgmain:time before volume save: 0:00:00.023511
INFO:teigen.tgmain:time after volume save: 0:00:00.408655
INFO:teigen.tgmain:step1_init_datetime2017-10-12 14:11:08.992430
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
63 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:23.429611
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024593
INFO:teigen.tgmain:time before volume save: 0:00:00.024593
INFO:teigen.tgmain:time after volume save: 0:00:00.363272
INFO:teigen.tgmain:step1_init_datetime2017-10-12 14:13:34.449431
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
64 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:21.683714
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024186
INFO:teigen.tgmain:time before volume save: 0:00:00.024186
INFO:teigen.tgmain:time after volume save: 0:00:00.357134
INFO:teigen.tgmain:step1_init_datetime2017-10-12 14:15:58.173456
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
65 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:48.437490
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023650
INFO:teigen.tgmain:time before volume save: 0:00:00.023650
INFO:teigen.tgmain:time after volume save: 0:00:00.406884
INFO:teigen.tgmain:step1_init_datetime2017-10-12 14:18:48.669713
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
66 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:50.759665
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023788
INFO:teigen.tgmain:time before volume save: 0:00:00.023788
INFO:teigen.tgmain:time after volume save: 0:00:00.402047
INFO:teigen.tgmain:step1_init_datetime2017-10-12 14:21:41.506816
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
67 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:45.111422
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.033140
INFO:teigen.tgmain:time before volume save: 0:00:00.033140
INFO:teigen.tgmain:time after volume save: 0:00:00.500760
INFO:teigen.tgmain:step1_init_datetime2017-10-12 14:25:29.086359
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
68 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:21.765205
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.029116
INFO:teigen.tgmain:time before volume save: 0:00:00.029116
INFO:teigen.tgmain:time after volume save: 0:00:00.543840
INFO:teigen.tgmain:step1_init_datetime2017-10-12 14:28:53.286259
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
69 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:21.311828
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.026009
INFO:teigen.tgmain:time before volume save: 0:00:00.026009
INFO:teigen.tgmain:time after volume save: 0:00:00.490258
INFO:teigen.tgmain:step1_init_datetime2017-10-12 14:32:16.914191
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
70 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:27.746716
INFO:teigen.tgmain:time before volume generate: 0:00:00.024180
INFO:teigen.tgmain:time before volume save: 0:00:00.024180
INFO:teigen.tgmain:time after volume save: 0:00:00.049296
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 14:32:46.282665
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
71 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:25.801664
INFO:teigen.tgmain:time before volume generate: 0:00:00.023397
INFO:teigen.tgmain:time before volume save: 0:00:00.023397
INFO:teigen.tgmain:time after volume save: 0:00:00.046619
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 14:33:13.779352
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
72 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.869244
INFO:teigen.tgmain:time before volume generate: 0:00:00.023439
INFO:teigen.tgmain:time before volume save: 0:00:00.023439
INFO:teigen.tgmain:time after volume save: 0:00:00.055491
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 14:33:42.334008
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
73 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.286932
INFO:teigen.tgmain:time before volume generate: 0:00:00.025050
INFO:teigen.tgmain:time before volume save: 0:00:00.025050
INFO:teigen.tgmain:time after volume save: 0:00:00.056112
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 14:34:10.297279
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
74 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.211869
INFO:teigen.tgmain:time before volume generate: 0:00:00.023653
INFO:teigen.tgmain:time before volume save: 0:00:00.023653
INFO:teigen.tgmain:time after volume save: 0:00:00.054112
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 14:34:38.127765
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
75 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:30.498126
INFO:teigen.tgmain:time before volume generate: 0:00:00.041823
INFO:teigen.tgmain:time before volume save: 0:00:00.041823
INFO:teigen.tgmain:time after volume save: 0:00:00.107692
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 14:35:10.388699
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
76 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:30.187001
INFO:teigen.tgmain:time before volume generate: 0:00:00.024185
INFO:teigen.tgmain:time before volume save: 0:00:00.024185
INFO:teigen.tgmain:time after volume save: 0:00:00.070831
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 14:35:42.293897
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
77 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:34.558248
INFO:teigen.tgmain:time before volume generate: 0:00:00.045513
INFO:teigen.tgmain:time before volume save: 0:00:00.045513
INFO:teigen.tgmain:time after volume save: 0:00:00.143129
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 14:36:19.091254
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
78 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:32.923589
INFO:teigen.tgmain:time before volume generate: 0:00:00.026230
INFO:teigen.tgmain:time before volume save: 0:00:00.026230
INFO:teigen.tgmain:time after volume save: 0:00:00.092190
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 14:36:53.853592
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
79 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:34.796556
INFO:teigen.tgmain:time before volume generate: 0:00:00.024567
INFO:teigen.tgmain:time before volume save: 0:00:00.024567
INFO:teigen.tgmain:time after volume save: 0:00:00.089982
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 14:37:30.453968
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
80 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:41.014446
INFO:teigen.tgmain:time before volume generate: 0:00:00.024547
INFO:teigen.tgmain:time before volume save: 0:00:00.024547
INFO:teigen.tgmain:time after volume save: 0:00:00.111236
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 14:38:13.182810
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
81 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:39.323472
INFO:teigen.tgmain:time before volume generate: 0:00:00.023388
INFO:teigen.tgmain:time before volume save: 0:00:00.023388
INFO:teigen.tgmain:time after volume save: 0:00:00.107781
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 14:38:54.203747
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
82 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:43.877230
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.045008
INFO:teigen.tgmain:time before volume save: 0:00:00.045008
INFO:teigen.tgmain:time after volume save: 0:00:00.176818
INFO:teigen.tgmain:step1_init_datetime2017-10-12 14:39:39.923337
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
83 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:46.268575
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.029257
INFO:teigen.tgmain:time before volume save: 0:00:00.029257
INFO:teigen.tgmain:time after volume save: 0:00:00.176836
INFO:teigen.tgmain:step1_init_datetime2017-10-12 14:40:28.328213
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
84 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:02.980511
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.026728
INFO:teigen.tgmain:time before volume save: 0:00:00.026728
INFO:teigen.tgmain:time after volume save: 0:00:00.201745
INFO:teigen.tgmain:step1_init_datetime2017-10-12 14:41:33.874301
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
85 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:05.895613
INFO:teigen.tgmain:time before volume generate: 0:00:00.024019
INFO:teigen.tgmain:time before volume save: 0:00:00.024019
INFO:teigen.tgmain:time after volume save: 0:00:00.160510
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 14:42:42.118969
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
86 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:51.479048
INFO:teigen.tgmain:time before volume generate: 0:00:00.025881
INFO:teigen.tgmain:time before volume save: 0:00:00.025881
step1 finished
INFO:teigen.tgmain:time after volume save: 0:00:00.174071
INFO:teigen.tgmain:step1_init_datetime2017-10-12 14:43:35.496636
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
87 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
INFO:teigen.tgmain:time: 0:01:05.943895
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023870
INFO:teigen.tgmain:time before volume save: 0:00:00.023870
INFO:teigen.tgmain:time after volume save: 0:00:00.195276
INFO:teigen.tgmain:step1_init_datetime2017-10-12 14:44:43.397780
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
88 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:00:57.504769
generate vtk finished
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023370
INFO:teigen.tgmain:time before volume save: 0:00:00.023370
INFO:teigen.tgmain:time after volume save: 0:00:00.194008
INFO:teigen.tgmain:step1_init_datetime2017-10-12 14:45:42.711001
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
89 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:57.689053
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023550
INFO:teigen.tgmain:time before volume save: 0:00:00.023550
INFO:teigen.tgmain:time after volume save: 0:00:00.194570
INFO:teigen.tgmain:step1_init_datetime2017-10-12 14:46:42.234183
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
90 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
INFO:teigen.tgmain:time: 0:01:11.287369
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.027037
INFO:teigen.tgmain:time before volume save: 0:00:00.027037
INFO:teigen.tgmain:time after volume save: 0:00:00.237265
INFO:teigen.tgmain:step1_init_datetime2017-10-12 14:47:55.500647
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
91 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:10.746713
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024052
INFO:teigen.tgmain:time before volume save: 0:00:00.024052
INFO:teigen.tgmain:time after volume save: 0:00:00.226170
INFO:teigen.tgmain:step1_init_datetime2017-10-12 14:49:08.116278
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
92 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:55.215459
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023630
INFO:teigen.tgmain:time before volume save: 0:00:00.023630
INFO:teigen.tgmain:time after volume save: 0:00:00.275865
INFO:teigen.tgmain:step1_init_datetime2017-10-12 14:51:05.357163
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
93 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:48.662318
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023463
INFO:teigen.tgmain:time before volume save: 0:00:00.023463
INFO:teigen.tgmain:time after volume save: 0:00:00.363728
INFO:teigen.tgmain:step1_init_datetime2017-10-12 14:52:56.636416
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
94 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:01:45.843354
generate vtk finished
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023375
INFO:teigen.tgmain:time before volume save: 0:00:00.023375
INFO:teigen.tgmain:time after volume save: 0:00:00.266746
INFO:teigen.tgmain:step1_init_datetime2017-10-12 14:54:44.396943
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
95 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:08.773315
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.043564
INFO:teigen.tgmain:time before volume save: 0:00:00.043564
INFO:teigen.tgmain:time after volume save: 0:00:00.358359
INFO:teigen.tgmain:step1_init_datetime2017-10-12 14:56:55.411634
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
96 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:11.628423
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023923
INFO:teigen.tgmain:time before volume save: 0:00:00.023923
INFO:teigen.tgmain:time after volume save: 0:00:00.308402
INFO:teigen.tgmain:step1_init_datetime2017-10-12 14:59:09.103503
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
97 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:43.154239
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023849
INFO:teigen.tgmain:time before volume save: 0:00:00.023849
INFO:teigen.tgmain:time after volume save: 0:00:00.364096
INFO:teigen.tgmain:step1_init_datetime2017-10-12 15:01:54.287787
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
98 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:25.421651
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023765
INFO:teigen.tgmain:time before volume save: 0:00:00.023765
INFO:teigen.tgmain:time after volume save: 0:00:00.358260
INFO:teigen.tgmain:step1_init_datetime2017-10-12 15:04:21.725973
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
99 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:27.141473
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023087
INFO:teigen.tgmain:time before volume save: 0:00:00.023087
INFO:teigen.tgmain:time after volume save: 0:00:00.513916
INFO:teigen.tgmain:step1_init_datetime2017-10-12 15:06:51.278609
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
100 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:22.008218
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023604
INFO:teigen.tgmain:time before volume save: 0:00:00.023604
INFO:teigen.tgmain:time after volume save: 0:00:00.406167
INFO:teigen.tgmain:step1_init_datetime2017-10-12 15:10:15.376588
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
101 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:47.970655
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023307
INFO:teigen.tgmain:time before volume save: 0:00:00.023307
INFO:teigen.tgmain:time after volume save: 0:00:00.429154
INFO:teigen.tgmain:step1_init_datetime2017-10-12 15:13:05.508664
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
102 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:33.935324
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023314
INFO:teigen.tgmain:time before volume save: 0:00:00.023314
INFO:teigen.tgmain:time after volume save: 0:00:00.475783
INFO:teigen.tgmain:step1_init_datetime2017-10-12 15:16:41.603266
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
103 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:03:19.735857
generate vtk finished
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.032260
INFO:teigen.tgmain:time before volume save: 0:00:00.032260
INFO:teigen.tgmain:time after volume save: 0:00:00.481716
INFO:teigen.tgmain:step1_init_datetime2017-10-12 15:20:03.660162
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
104 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:14.827613
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023665
INFO:teigen.tgmain:time before volume save: 0:00:00.023665
INFO:teigen.tgmain:time after volume save: 0:00:00.463335
INFO:teigen.tgmain:step1_init_datetime2017-10-12 15:23:20.676190
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
105 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.465085
INFO:teigen.tgmain:time before volume generate: 0:00:00.023665
INFO:teigen.tgmain:time before volume save: 0:00:00.023665
INFO:teigen.tgmain:time after volume save: 0:00:00.049391
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 15:23:48.790028
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
106 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.107394
INFO:teigen.tgmain:time before volume generate: 0:00:00.023673
INFO:teigen.tgmain:time before volume save: 0:00:00.023673
INFO:teigen.tgmain:time after volume save: 0:00:00.046950
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 15:24:16.564127
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
107 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
INFO:teigen.tgmain:time: 0:00:26.538871
INFO:teigen.tgmain:time before volume generate: 0:00:00.023352
INFO:teigen.tgmain:time before volume save: 0:00:00.023352
INFO:teigen.tgmain:time after volume save: 0:00:00.055311
progess: 0.933333333333
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 15:24:44.914044
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
108 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.549145
INFO:teigen.tgmain:time before volume generate: 0:00:00.038946
INFO:teigen.tgmain:time before volume save: 0:00:00.038946
INFO:teigen.tgmain:time after volume save: 0:00:00.082097
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 15:25:13.205494
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
109 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:29.304388
INFO:teigen.tgmain:time before volume generate: 0:00:00.023664
INFO:teigen.tgmain:time before volume save: 0:00:00.023664
INFO:teigen.tgmain:time after volume save: 0:00:00.053969
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 15:25:44.223166
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
110 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:33.784008
INFO:teigen.tgmain:time before volume generate: 0:00:00.025804
INFO:teigen.tgmain:time before volume save: 0:00:00.025804
INFO:teigen.tgmain:time after volume save: 0:00:00.083548
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 15:26:19.709477
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
111 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:31.559131
INFO:teigen.tgmain:time before volume generate: 0:00:00.036797
INFO:teigen.tgmain:time before volume save: 0:00:00.036797
INFO:teigen.tgmain:time after volume save: 0:00:00.086053
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 15:26:53.062388
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
112 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:43.343247
INFO:teigen.tgmain:time before volume generate: 0:00:00.035102
INFO:teigen.tgmain:time before volume save: 0:00:00.035102
INFO:teigen.tgmain:time after volume save: 0:00:00.130406
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 15:27:39.203962
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
113 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:41.625324
INFO:teigen.tgmain:time before volume generate: 0:00:00.024947
INFO:teigen.tgmain:time before volume save: 0:00:00.024947
INFO:teigen.tgmain:time after volume save: 0:00:00.093479
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 15:28:22.741416
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
114 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
INFO:teigen.tgmain:time: 0:00:35.473411
INFO:teigen.tgmain:time before volume generate: 0:00:00.024120
INFO:teigen.tgmain:time before volume save: 0:00:00.024120
INFO:teigen.tgmain:time after volume save: 0:00:00.085680
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 15:28:59.937172
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
115 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:39.139017
INFO:teigen.tgmain:time before volume generate: 0:00:00.023495
INFO:teigen.tgmain:time before volume save: 0:00:00.023495
INFO:teigen.tgmain:time after volume save: 0:00:00.107482
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 15:29:40.860922
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
116 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:41.333731
INFO:teigen.tgmain:time before volume generate: 0:00:00.024370
INFO:teigen.tgmain:time before volume save: 0:00:00.024370
INFO:teigen.tgmain:time after volume save: 0:00:00.107915
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 15:30:23.971365
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
117 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:45.814886
INFO:teigen.tgmain:time before volume generate: 0:00:00.024342
INFO:teigen.tgmain:time before volume save: 0:00:00.024342
INFO:teigen.tgmain:time after volume save: 0:00:00.137337
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 15:31:11.641911
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
118 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:41.654276
INFO:teigen.tgmain:time before volume generate: 0:00:00.023516
INFO:teigen.tgmain:time before volume save: 0:00:00.023516
INFO:teigen.tgmain:time after volume save: 0:00:00.131847
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 15:31:55.045476
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
119 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:42.218277
INFO:teigen.tgmain:time before volume generate: 0:00:00.023537
INFO:teigen.tgmain:time before volume save: 0:00:00.023537
INFO:teigen.tgmain:time after volume save: 0:00:00.131659
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 15:32:39.053659
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
120 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:51.144208
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.026187
INFO:teigen.tgmain:time before volume save: 0:00:00.026187
INFO:teigen.tgmain:time after volume save: 0:00:00.179157
INFO:teigen.tgmain:step1_init_datetime2017-10-12 15:33:32.233653
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
121 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:53.106397
INFO:teigen.tgmain:time before volume generate: 0:00:00.024464
INFO:teigen.tgmain:time before volume save: 0:00:00.024464
INFO:teigen.tgmain:time after volume save: 0:00:00.159610
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 15:34:27.139371
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
122 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:02.534484
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023632
INFO:teigen.tgmain:time before volume save: 0:00:00.023632
INFO:teigen.tgmain:time after volume save: 0:00:00.196592
INFO:teigen.tgmain:step1_init_datetime2017-10-12 15:35:31.532490
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
123 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:01.506110
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023374
INFO:teigen.tgmain:time before volume save: 0:00:00.023374
INFO:teigen.tgmain:time after volume save: 0:00:00.193800
INFO:teigen.tgmain:step1_init_datetime2017-10-12 15:36:34.881347
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
124 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:01.078839
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.025974
INFO:teigen.tgmain:time before volume save: 0:00:00.025974
INFO:teigen.tgmain:time after volume save: 0:00:00.196188
INFO:teigen.tgmain:step1_init_datetime2017-10-12 15:37:37.818216
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
125 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:09.764508
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.040203
INFO:teigen.tgmain:time before volume save: 0:00:00.040203
INFO:teigen.tgmain:time after volume save: 0:00:00.270137
INFO:teigen.tgmain:step1_init_datetime2017-10-12 15:38:49.531417
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
126 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:13.120290
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023485
INFO:teigen.tgmain:time before volume save: 0:00:00.023485
INFO:teigen.tgmain:time after volume save: 0:00:00.225332
INFO:teigen.tgmain:step1_init_datetime2017-10-12 15:40:04.608548
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
127 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:02.975993
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.050197
INFO:teigen.tgmain:time before volume save: 0:00:00.050197
INFO:teigen.tgmain:time after volume save: 0:00:00.435617
INFO:teigen.tgmain:step1_init_datetime2017-10-12 15:42:10.376934
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
128 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:53.530325
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.028594
INFO:teigen.tgmain:time before volume save: 0:00:00.028594
INFO:teigen.tgmain:time after volume save: 0:00:00.323688
INFO:teigen.tgmain:step1_init_datetime2017-10-12 15:44:06.051119
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
129 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:52.397306
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.025212
INFO:teigen.tgmain:time before volume save: 0:00:00.025212
INFO:teigen.tgmain:time after volume save: 0:00:00.292774
INFO:teigen.tgmain:step1_init_datetime2017-10-12 15:46:00.477711
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
130 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:07.175914
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024655
INFO:teigen.tgmain:time before volume save: 0:00:00.024655
INFO:teigen.tgmain:time after volume save: 0:00:00.324842
INFO:teigen.tgmain:step1_init_datetime2017-10-12 15:48:09.871468
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
131 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:26.049914
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.036564
INFO:teigen.tgmain:time before volume save: 0:00:00.036564
INFO:teigen.tgmain:time after volume save: 0:00:00.466548
INFO:teigen.tgmain:step1_init_datetime2017-10-12 15:50:38.652520
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
132 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:51.636755
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.038102
INFO:teigen.tgmain:time before volume save: 0:00:00.038102
INFO:teigen.tgmain:time after volume save: 0:00:00.411248
INFO:teigen.tgmain:step1_init_datetime2017-10-12 15:53:32.490263
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
133 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:30.406308
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.032499
INFO:teigen.tgmain:time before volume save: 0:00:00.032499
INFO:teigen.tgmain:time after volume save: 0:00:00.397238
INFO:teigen.tgmain:step1_init_datetime2017-10-12 15:56:05.172562
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
134 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:33.345327
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023668
INFO:teigen.tgmain:time before volume save: 0:00:00.023668
INFO:teigen.tgmain:time after volume save: 0:00:00.380113
INFO:teigen.tgmain:step1_init_datetime2017-10-12 15:58:40.682927
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
135 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:58.611486
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.037271
INFO:teigen.tgmain:time before volume save: 0:00:00.037271
INFO:teigen.tgmain:time after volume save: 0:00:00.466788
INFO:teigen.tgmain:step1_init_datetime2017-10-12 16:01:41.652711
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
136 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:57.726656
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.029482
INFO:teigen.tgmain:time before volume save: 0:00:00.029482
INFO:teigen.tgmain:time after volume save: 0:00:00.498107
INFO:teigen.tgmain:step1_init_datetime2017-10-12 16:04:41.870347
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
137 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:51.971836
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.042604
INFO:teigen.tgmain:time before volume save: 0:00:00.042604
INFO:teigen.tgmain:time after volume save: 0:00:00.618196
INFO:teigen.tgmain:step1_init_datetime2017-10-12 16:08:36.400304
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
138 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:22.668342
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.026180
INFO:teigen.tgmain:time before volume save: 0:00:00.026180
INFO:teigen.tgmain:time after volume save: 0:00:00.551057
INFO:teigen.tgmain:step1_init_datetime2017-10-12 16:12:01.993506
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
139 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:24.710477
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.039892
INFO:teigen.tgmain:time before volume save: 0:00:00.039892
INFO:teigen.tgmain:time after volume save: 0:00:00.528107
INFO:teigen.tgmain:step1_init_datetime2017-10-12 16:15:29.240873
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
140 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:28.349410
INFO:teigen.tgmain:time before volume generate: 0:00:00.025436
INFO:teigen.tgmain:time before volume save: 0:00:00.025436
INFO:teigen.tgmain:time after volume save: 0:00:00.050633
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 16:15:59.526483
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
141 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:29.847142
INFO:teigen.tgmain:time before volume generate: 0:00:00.024211
INFO:teigen.tgmain:time before volume save: 0:00:00.024211
INFO:teigen.tgmain:time after volume save: 0:00:00.047801
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 16:16:31.183093
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
142 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:29.453951
INFO:teigen.tgmain:time before volume generate: 0:00:00.024847
INFO:teigen.tgmain:time before volume save: 0:00:00.024847
INFO:teigen.tgmain:time after volume save: 0:00:00.057532
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 16:17:02.484349
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
143 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:32.011336
INFO:teigen.tgmain:time before volume generate: 0:00:00.033007
INFO:teigen.tgmain:time before volume save: 0:00:00.033007
INFO:teigen.tgmain:time after volume save: 0:00:00.064106
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 16:17:36.406973
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
144 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:29.743241
INFO:teigen.tgmain:time before volume generate: 0:00:00.031388
INFO:teigen.tgmain:time before volume save: 0:00:00.031388
INFO:teigen.tgmain:time after volume save: 0:00:00.076319
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 16:18:08.270518
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
145 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:32.889690
INFO:teigen.tgmain:time before volume generate: 0:00:00.024775
INFO:teigen.tgmain:time before volume save: 0:00:00.024775
INFO:teigen.tgmain:time after volume save: 0:00:00.073960
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 16:18:43.006068
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
146 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
INFO:teigen.tgmain:time: 0:00:34.496495
INFO:teigen.tgmain:time before volume generate: 0:00:00.024990
INFO:teigen.tgmain:time before volume save: 0:00:00.024990
INFO:teigen.tgmain:time after volume save: 0:00:00.075175
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 16:19:19.453475
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
147 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:39.160315
INFO:teigen.tgmain:time before volume generate: 0:00:00.047643
step1 finished
INFO:teigen.tgmain:time before volume save: 0:00:00.047643
INFO:teigen.tgmain:time after volume save: 0:00:00.159417
INFO:teigen.tgmain:step1_init_datetime2017-10-12 16:20:01.556905
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
148 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:38.527720
INFO:teigen.tgmain:time before volume generate: 0:00:00.024396
INFO:teigen.tgmain:time before volume save: 0:00:00.024396
INFO:teigen.tgmain:time after volume save: 0:00:00.087362
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 16:20:41.909668
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
149 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:37.455625
INFO:teigen.tgmain:time before volume generate: 0:00:00.024964
INFO:teigen.tgmain:time before volume save: 0:00:00.024964
INFO:teigen.tgmain:time after volume save: 0:00:00.091215
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 16:21:21.328047
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
150 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:42.877367
INFO:teigen.tgmain:time before volume generate: 0:00:00.028130
INFO:teigen.tgmain:time before volume save: 0:00:00.028130
INFO:teigen.tgmain:time after volume save: 0:00:00.117833
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 16:22:06.464641
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
151 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:46.319444
INFO:teigen.tgmain:time before volume generate: 0:00:00.032439
INFO:teigen.tgmain:time before volume save: 0:00:00.032439
INFO:teigen.tgmain:time after volume save: 0:00:00.126194
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 16:22:54.606111
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
152 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:50.084914
INFO:teigen.tgmain:time before volume generate: 0:00:00.023390
INFO:teigen.tgmain:time before volume save: 0:00:00.023390
INFO:teigen.tgmain:time after volume save: 0:00:00.137248
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 16:23:46.531062
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
153 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:45.796143
INFO:teigen.tgmain:time before volume generate: 0:00:00.026761
INFO:teigen.tgmain:time before volume save: 0:00:00.026761
INFO:teigen.tgmain:time after volume save: 0:00:00.162641
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 16:24:34.253479
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
154 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:49.614606
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.042762
INFO:teigen.tgmain:time before volume save: 0:00:00.042762
INFO:teigen.tgmain:time after volume save: 0:00:00.173191
INFO:teigen.tgmain:step1_init_datetime2017-10-12 16:25:26.330130
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
155 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:03.140690
INFO:teigen.tgmain:time before volume generate: 0:00:00.031647
step1 finished
INFO:teigen.tgmain:time before volume save: 0:00:00.031647
INFO:teigen.tgmain:time after volume save: 0:00:00.173093
INFO:teigen.tgmain:step1_init_datetime2017-10-12 16:26:31.597816
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
156 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:04.686267
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.035135
INFO:teigen.tgmain:time before volume save: 0:00:00.035135
INFO:teigen.tgmain:time after volume save: 0:00:00.223930
INFO:teigen.tgmain:step1_init_datetime2017-10-12 16:27:38.566687
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
157 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
INFO:teigen.tgmain:time: 0:01:13.294296
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023777
INFO:teigen.tgmain:time before volume save: 0:00:00.023777
INFO:teigen.tgmain:time after volume save: 0:00:00.206609
INFO:teigen.tgmain:step1_init_datetime2017-10-12 16:28:54.027642
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
158 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:03.023457
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.025761
INFO:teigen.tgmain:time before volume save: 0:00:00.025761
INFO:teigen.tgmain:time after volume save: 0:00:00.214983
INFO:teigen.tgmain:step1_init_datetime2017-10-12 16:29:59.228502
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
159 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:01:02.471882
generate vtk finished
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.032059
INFO:teigen.tgmain:time before volume save: 0:00:00.032059
INFO:teigen.tgmain:time after volume save: 0:00:00.227986
INFO:teigen.tgmain:step1_init_datetime2017-10-12 16:31:03.716419
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
160 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:16.741919
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024584
INFO:teigen.tgmain:time before volume save: 0:00:00.024584
INFO:teigen.tgmain:time after volume save: 0:00:00.236439
INFO:teigen.tgmain:step1_init_datetime2017-10-12 16:32:22.550891
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
161 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:14.764902
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024258
INFO:teigen.tgmain:time before volume save: 0:00:00.024258
INFO:teigen.tgmain:time after volume save: 0:00:00.227373
INFO:teigen.tgmain:step1_init_datetime2017-10-12 16:33:39.235037
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
162 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:12.179917
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.026623
INFO:teigen.tgmain:time before volume save: 0:00:00.026623
INFO:teigen.tgmain:time after volume save: 0:00:00.289702
INFO:teigen.tgmain:step1_init_datetime2017-10-12 16:35:53.568769
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
163 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:52.592708
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.043960
INFO:teigen.tgmain:time before volume save: 0:00:00.043960
INFO:teigen.tgmain:time after volume save: 0:00:00.376431
INFO:teigen.tgmain:step1_init_datetime2017-10-12 16:37:48.831756
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
164 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:51.724856
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.027775
INFO:teigen.tgmain:time before volume save: 0:00:00.027775
INFO:teigen.tgmain:time after volume save: 0:00:00.288822
INFO:teigen.tgmain:step1_init_datetime2017-10-12 16:39:42.676730
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
165 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:12.854359
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024377
INFO:teigen.tgmain:time before volume save: 0:00:00.024377
INFO:teigen.tgmain:time after volume save: 0:00:00.325754
INFO:teigen.tgmain:step1_init_datetime2017-10-12 16:41:57.690800
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
166 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:33.442015
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.044718
INFO:teigen.tgmain:time before volume save: 0:00:00.044718
INFO:teigen.tgmain:time after volume save: 0:00:00.421190
INFO:teigen.tgmain:step1_init_datetime2017-10-12 16:44:33.847535
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
167 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:02.040244
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.028935
INFO:teigen.tgmain:time before volume save: 0:00:00.028935
INFO:teigen.tgmain:time after volume save: 0:00:00.396358
INFO:teigen.tgmain:step1_init_datetime2017-10-12 16:47:38.301790
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
168 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:25.352842
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.042937
INFO:teigen.tgmain:time before volume save: 0:00:00.042937
INFO:teigen.tgmain:time after volume save: 0:00:00.414628
INFO:teigen.tgmain:step1_init_datetime2017-10-12 16:50:05.833140
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
169 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:27.571459
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.032197
INFO:teigen.tgmain:time before volume save: 0:00:00.032197
INFO:teigen.tgmain:time after volume save: 0:00:00.381450
INFO:teigen.tgmain:step1_init_datetime2017-10-12 16:52:35.666290
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
170 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:55.984081
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.048857
INFO:teigen.tgmain:time before volume save: 0:00:00.048857
INFO:teigen.tgmain:time after volume save: 0:00:00.567992
INFO:teigen.tgmain:step1_init_datetime2017-10-12 16:55:34.501633
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
171 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:00.720926
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023425
INFO:teigen.tgmain:time before volume save: 0:00:00.023425
INFO:teigen.tgmain:time after volume save: 0:00:00.413811
INFO:teigen.tgmain:step1_init_datetime2017-10-12 16:58:37.563522
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
172 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:04:01.993708
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.027241
INFO:teigen.tgmain:time before volume save: 0:00:00.027241
INFO:teigen.tgmain:time after volume save: 0:00:00.479363
INFO:teigen.tgmain:step1_init_datetime2017-10-12 17:02:41.859820
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
173 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:34.797560
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024090
INFO:teigen.tgmain:time before volume save: 0:00:00.024090
INFO:teigen.tgmain:time after volume save: 0:00:00.474004
INFO:teigen.tgmain:step1_init_datetime2017-10-12 17:06:19.039308
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
174 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:20.771331
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023795
INFO:teigen.tgmain:time before volume save: 0:00:00.023795
INFO:teigen.tgmain:time after volume save: 0:00:00.463100
INFO:teigen.tgmain:step1_init_datetime2017-10-12 17:09:42.091110
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
175 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:29.537702
INFO:teigen.tgmain:time before volume generate: 0:00:00.023917
INFO:teigen.tgmain:time before volume save: 0:00:00.023917
INFO:teigen.tgmain:time after volume save: 0:00:00.048085
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 17:10:13.428060
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
176 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
INFO:teigen.tgmain:time: 0:00:25.212537
INFO:teigen.tgmain:time before volume generate: 0:00:00.028460
INFO:teigen.tgmain:time before volume save: 0:00:00.028460
INFO:teigen.tgmain:time after volume save: 0:00:00.054975
progess: 0.933333333333
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 17:10:40.407842
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
177 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:25.859533
INFO:teigen.tgmain:time before volume generate: 0:00:00.031506
INFO:teigen.tgmain:time before volume save: 0:00:00.031506
INFO:teigen.tgmain:time after volume save: 0:00:00.070482
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 17:11:07.993706
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
178 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
INFO:teigen.tgmain:time: 0:00:26.752088
INFO:teigen.tgmain:time before volume generate: 0:00:00.044137
INFO:teigen.tgmain:time before volume save: 0:00:00.044137
INFO:teigen.tgmain:time after volume save: 0:00:00.091737
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 17:11:36.643892
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
179 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.991801
INFO:teigen.tgmain:time before volume generate: 0:00:00.024089
INFO:teigen.tgmain:time before volume save: 0:00:00.024089
INFO:teigen.tgmain:time after volume save: 0:00:00.054497
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 17:12:05.388705
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
180 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:32.469301
INFO:teigen.tgmain:time before volume generate: 0:00:00.023728
INFO:teigen.tgmain:time before volume save: 0:00:00.023728
INFO:teigen.tgmain:time after volume save: 0:00:00.070595
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 17:12:39.584270
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
181 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:30.764813
INFO:teigen.tgmain:time before volume generate: 0:00:00.024553
INFO:teigen.tgmain:time before volume save: 0:00:00.024553
INFO:teigen.tgmain:time after volume save: 0:00:00.072238
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 17:13:12.139946
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
182 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:33.434562
INFO:teigen.tgmain:time before volume generate: 0:00:00.024326
INFO:teigen.tgmain:time before volume save: 0:00:00.024326
INFO:teigen.tgmain:time after volume save: 0:00:00.088860
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 17:13:47.400946
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
183 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:32.387035
INFO:teigen.tgmain:time before volume generate: 0:00:00.025254
INFO:teigen.tgmain:time before volume save: 0:00:00.025254
INFO:teigen.tgmain:time after volume save: 0:00:00.087592
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 17:14:21.583181
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
184 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:32.796083
INFO:teigen.tgmain:time before volume generate: 0:00:00.024067
INFO:teigen.tgmain:time before volume save: 0:00:00.024067
INFO:teigen.tgmain:time after volume save: 0:00:00.086817
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 17:14:56.209728
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
185 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:38.719447
INFO:teigen.tgmain:time before volume generate: 0:00:00.024023
INFO:teigen.tgmain:time before volume save: 0:00:00.024023
INFO:teigen.tgmain:time after volume save: 0:00:00.129308
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 17:15:36.762749
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
186 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:39.370171
INFO:teigen.tgmain:time before volume generate: 0:00:00.025474
INFO:teigen.tgmain:time before volume save: 0:00:00.025474
INFO:teigen.tgmain:time after volume save: 0:00:00.112076
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 17:16:17.907197
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
187 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
INFO:teigen.tgmain:time: 0:00:44.630726
INFO:teigen.tgmain:time before volume generate: 0:00:00.027484
INFO:teigen.tgmain:time before volume save: 0:00:00.027484
INFO:teigen.tgmain:time after volume save: 0:00:00.149728
progess: 0.933333333333
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 17:17:04.546209
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
188 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:47.306693
INFO:teigen.tgmain:time before volume generate: 0:00:00.023781
INFO:teigen.tgmain:time before volume save: 0:00:00.023781
INFO:teigen.tgmain:time after volume save: 0:00:00.134751
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 17:17:53.646103
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
189 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:44.454835
INFO:teigen.tgmain:time before volume generate: 0:00:00.023644
INFO:teigen.tgmain:time before volume save: 0:00:00.023644
INFO:teigen.tgmain:time after volume save: 0:00:00.131446
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 17:18:39.913130
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
190 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:51.551196
INFO:teigen.tgmain:time before volume generate: 0:00:00.023403
INFO:teigen.tgmain:time before volume save: 0:00:00.023403
INFO:teigen.tgmain:time after volume save: 0:00:00.159211
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 17:19:33.263042
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
191 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:58.653009
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.028190
INFO:teigen.tgmain:time before volume save: 0:00:00.028190
INFO:teigen.tgmain:time after volume save: 0:00:00.171587
INFO:teigen.tgmain:step1_init_datetime2017-10-12 17:20:33.855669
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
192 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:06.562803
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024175
INFO:teigen.tgmain:time before volume save: 0:00:00.024175
INFO:teigen.tgmain:time after volume save: 0:00:00.198526
INFO:teigen.tgmain:step1_init_datetime2017-10-12 17:21:42.323223
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
193 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:58.935549
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024967
INFO:teigen.tgmain:time before volume save: 0:00:00.024967
INFO:teigen.tgmain:time after volume save: 0:00:00.203054
INFO:teigen.tgmain:step1_init_datetime2017-10-12 17:22:43.186878
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
194 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:00.645903
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.039610
INFO:teigen.tgmain:time before volume save: 0:00:00.039610
INFO:teigen.tgmain:time after volume save: 0:00:00.268775
INFO:teigen.tgmain:step1_init_datetime2017-10-12 17:23:46.282648
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
195 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:11.446852
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.029595
INFO:teigen.tgmain:time before volume save: 0:00:00.029595
INFO:teigen.tgmain:time after volume save: 0:00:00.240160
INFO:teigen.tgmain:step1_init_datetime2017-10-12 17:24:59.670694
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
196 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:11.933117
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.033841
INFO:teigen.tgmain:time before volume save: 0:00:00.033841
INFO:teigen.tgmain:time after volume save: 0:00:00.255632
INFO:teigen.tgmain:step1_init_datetime2017-10-12 17:26:13.675987
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
197 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:57.061590
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.033714
INFO:teigen.tgmain:time before volume save: 0:00:00.033714
INFO:teigen.tgmain:time after volume save: 0:00:00.307340
INFO:teigen.tgmain:step1_init_datetime2017-10-12 17:28:12.914011
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
198 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:49.544000
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.028744
INFO:teigen.tgmain:time before volume save: 0:00:00.028744
INFO:teigen.tgmain:time after volume save: 0:00:00.283971
INFO:teigen.tgmain:step1_init_datetime2017-10-12 17:30:04.573132
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
199 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:47.547270
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.031640
INFO:teigen.tgmain:time before volume save: 0:00:00.031640
INFO:teigen.tgmain:time after volume save: 0:00:00.287523
INFO:teigen.tgmain:step1_init_datetime2017-10-12 17:31:54.232876
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
200 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:09.336668
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.034698
INFO:teigen.tgmain:time before volume save: 0:00:00.034698
INFO:teigen.tgmain:time after volume save: 0:00:00.341564
INFO:teigen.tgmain:step1_init_datetime2017-10-12 17:34:05.807276
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
201 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:04.490908
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023671
INFO:teigen.tgmain:time before volume save: 0:00:00.023671
INFO:teigen.tgmain:time after volume save: 0:00:00.312428
INFO:teigen.tgmain:step1_init_datetime2017-10-12 17:36:12.619146
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
202 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:02:42.374300
generate vtk finished
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024068
INFO:teigen.tgmain:time before volume save: 0:00:00.024068
INFO:teigen.tgmain:time after volume save: 0:00:00.382825
INFO:teigen.tgmain:step1_init_datetime2017-10-12 17:38:57.202821
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
203 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:29.630551
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.036231
INFO:teigen.tgmain:time before volume save: 0:00:00.036231
INFO:teigen.tgmain:time after volume save: 0:00:00.382709
INFO:teigen.tgmain:step1_init_datetime2017-10-12 17:41:29.067501
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
204 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:29.843220
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.025959
INFO:teigen.tgmain:time before volume save: 0:00:00.025959
INFO:teigen.tgmain:time after volume save: 0:00:00.364025
INFO:teigen.tgmain:step1_init_datetime2017-10-12 17:44:01.113513
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
205 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
INFO:teigen.tgmain:time: 0:02:52.551155
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024401
INFO:teigen.tgmain:time before volume save: 0:00:00.024401
INFO:teigen.tgmain:time after volume save: 0:00:00.428382
INFO:teigen.tgmain:step1_init_datetime2017-10-12 17:46:55.933063
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
206 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:53.984917
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.026468
INFO:teigen.tgmain:time before volume save: 0:00:00.026468
INFO:teigen.tgmain:time after volume save: 0:00:00.423675
INFO:teigen.tgmain:step1_init_datetime2017-10-12 17:49:52.160039
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
207 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:44.173148
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023873
INFO:teigen.tgmain:time before volume save: 0:00:00.023873
INFO:teigen.tgmain:time after volume save: 0:00:00.475192
INFO:teigen.tgmain:step1_init_datetime2017-10-12 17:53:38.686868
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
208 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:20.111080
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024277
INFO:teigen.tgmain:time before volume save: 0:00:00.024277
INFO:teigen.tgmain:time after volume save: 0:00:00.471839
INFO:teigen.tgmain:step1_init_datetime2017-10-12 17:57:01.595225
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
209 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:16.484833
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.027052
INFO:teigen.tgmain:time before volume save: 0:00:00.027052
INFO:teigen.tgmain:time after volume save: 0:00:00.486063
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:00:20.465913
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
210 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.592726
INFO:teigen.tgmain:time before volume generate: 0:00:00.036492
INFO:teigen.tgmain:time before volume save: 0:00:00.036492
INFO:teigen.tgmain:time after volume save: 0:00:00.070653
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:00:48.966641
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
211 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:27.945082
INFO:teigen.tgmain:time before volume generate: 0:00:00.032488
INFO:teigen.tgmain:time before volume save: 0:00:00.032488
INFO:teigen.tgmain:time after volume save: 0:00:00.063362
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:01:19.020165
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
212 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:30.620781
INFO:teigen.tgmain:time before volume generate: 0:00:00.039512
INFO:teigen.tgmain:time before volume save: 0:00:00.039512
INFO:teigen.tgmain:time after volume save: 0:00:00.081697
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:01:51.677408
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
213 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:27.378210
INFO:teigen.tgmain:time before volume generate: 0:00:00.031537
INFO:teigen.tgmain:time before volume save: 0:00:00.031537
INFO:teigen.tgmain:time after volume save: 0:00:00.068370
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:02:20.874194
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
214 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.106226
INFO:teigen.tgmain:time before volume generate: 0:00:00.028633
INFO:teigen.tgmain:time before volume save: 0:00:00.028633
INFO:teigen.tgmain:time after volume save: 0:00:00.059688
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:02:48.727747
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
215 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:30.448095
INFO:teigen.tgmain:time before volume generate: 0:00:00.023542
INFO:teigen.tgmain:time before volume save: 0:00:00.023542
INFO:teigen.tgmain:time after volume save: 0:00:00.069976
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:03:20.955184
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
216 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:30.008532
INFO:teigen.tgmain:time before volume generate: 0:00:00.024001
INFO:teigen.tgmain:time before volume save: 0:00:00.024001
INFO:teigen.tgmain:time after volume save: 0:00:00.071202
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:03:52.779723
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
217 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:32.882171
INFO:teigen.tgmain:time before volume generate: 0:00:00.025179
INFO:teigen.tgmain:time before volume save: 0:00:00.025179
INFO:teigen.tgmain:time after volume save: 0:00:00.095362
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:04:27.446343
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
218 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:32.026470
INFO:teigen.tgmain:time before volume generate: 0:00:00.024115
INFO:teigen.tgmain:time before volume save: 0:00:00.024115
INFO:teigen.tgmain:time after volume save: 0:00:00.086799
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:05:01.235642
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
219 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:32.424061
INFO:teigen.tgmain:time before volume generate: 0:00:00.024996
INFO:teigen.tgmain:time before volume save: 0:00:00.024996
INFO:teigen.tgmain:time after volume save: 0:00:00.088300
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:05:35.450756
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
220 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:38.343819
INFO:teigen.tgmain:time before volume generate: 0:00:00.026670
INFO:teigen.tgmain:time before volume save: 0:00:00.026670
INFO:teigen.tgmain:time after volume save: 0:00:00.112450
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:06:15.770103
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
221 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:38.152110
INFO:teigen.tgmain:time before volume generate: 0:00:00.027526
INFO:teigen.tgmain:time before volume save: 0:00:00.027526
INFO:teigen.tgmain:time after volume save: 0:00:00.118507
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:06:55.725498
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
222 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:44.713132
INFO:teigen.tgmain:time before volume generate: 0:00:00.023641
INFO:teigen.tgmain:time before volume save: 0:00:00.023641
INFO:teigen.tgmain:time after volume save: 0:00:00.140277
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:07:42.291595
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
223 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:42.103342
INFO:teigen.tgmain:time before volume generate: 0:00:00.024168
INFO:teigen.tgmain:time before volume save: 0:00:00.024168
INFO:teigen.tgmain:time after volume save: 0:00:00.138457
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:08:26.205967
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
224 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:41.722613
INFO:teigen.tgmain:time before volume generate: 0:00:00.028831
INFO:teigen.tgmain:time before volume save: 0:00:00.028831
INFO:teigen.tgmain:time after volume save: 0:00:00.139939
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:09:09.756774
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
225 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:50.597207
INFO:teigen.tgmain:time before volume generate: 0:00:00.024316
INFO:teigen.tgmain:time before volume save: 0:00:00.024316
INFO:teigen.tgmain:time after volume save: 0:00:00.166199
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:10:02.230940
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
226 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:50.726432
INFO:teigen.tgmain:time before volume generate: 0:00:00.024980
step1 finished
INFO:teigen.tgmain:time before volume save: 0:00:00.024980
INFO:teigen.tgmain:time after volume save: 0:00:00.166972
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:10:54.827456
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
227 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:00.644921
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024386
INFO:teigen.tgmain:time before volume save: 0:00:00.024386
INFO:teigen.tgmain:time after volume save: 0:00:00.198066
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:11:57.435315
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
228 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:57.379521
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024278
INFO:teigen.tgmain:time before volume save: 0:00:00.024278
INFO:teigen.tgmain:time after volume save: 0:00:00.201598
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:12:56.718303
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
229 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:56.939214
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.027647
INFO:teigen.tgmain:time before volume save: 0:00:00.027647
INFO:teigen.tgmain:time after volume save: 0:00:00.203920
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:13:55.596330
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
230 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:09.887280
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024017
INFO:teigen.tgmain:time before volume save: 0:00:00.024017
INFO:teigen.tgmain:time after volume save: 0:00:00.233464
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:15:07.422439
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
231 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:09.117210
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.025885
INFO:teigen.tgmain:time before volume save: 0:00:00.025885
INFO:teigen.tgmain:time after volume save: 0:00:00.229530
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:16:18.484037
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
232 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:54.077626
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023740
INFO:teigen.tgmain:time before volume save: 0:00:00.023740
INFO:teigen.tgmain:time after volume save: 0:00:00.273630
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:18:14.549484
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
233 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:44.685143
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024717
INFO:teigen.tgmain:time before volume save: 0:00:00.024717
INFO:teigen.tgmain:time after volume save: 0:00:00.286987
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:20:01.294158
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
234 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
INFO:teigen.tgmain:time: 0:01:43.660805
progess: 0.933333333333
generate vtk finished
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023956
INFO:teigen.tgmain:time before volume save: 0:00:00.023956
INFO:teigen.tgmain:time after volume save: 0:00:00.268277
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:21:47.015969
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
235 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:04.947254
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024108
INFO:teigen.tgmain:time before volume save: 0:00:00.024108
INFO:teigen.tgmain:time after volume save: 0:00:00.320743
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:23:54.131372
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
236 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:05.057576
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024466
INFO:teigen.tgmain:time before volume save: 0:00:00.024466
INFO:teigen.tgmain:time after volume save: 0:00:00.326978
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:26:01.294937
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
237 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:38.340421
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023986
INFO:teigen.tgmain:time before volume save: 0:00:00.023986
INFO:teigen.tgmain:time after volume save: 0:00:00.372654
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:28:41.747802
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
238 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:23.149271
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023559
INFO:teigen.tgmain:time before volume save: 0:00:00.023559
INFO:teigen.tgmain:time after volume save: 0:00:00.368643
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:31:06.988747
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
239 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:22.275188
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024734
INFO:teigen.tgmain:time before volume save: 0:00:00.024734
INFO:teigen.tgmain:time after volume save: 0:00:00.416826
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:33:31.481866
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
240 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:48.090545
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024260
INFO:teigen.tgmain:time before volume save: 0:00:00.024260
INFO:teigen.tgmain:time after volume save: 0:00:00.411410
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:36:21.711394
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
241 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:48.651475
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.025428
INFO:teigen.tgmain:time before volume save: 0:00:00.025428
INFO:teigen.tgmain:time after volume save: 0:00:00.411861
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:39:12.550615
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
242 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:35.288008
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023994
INFO:teigen.tgmain:time before volume save: 0:00:00.023994
INFO:teigen.tgmain:time after volume save: 0:00:00.471563
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:42:50.057248
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
243 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:11.545564
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023792
INFO:teigen.tgmain:time before volume save: 0:00:00.023792
INFO:teigen.tgmain:time after volume save: 0:00:00.474030
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:46:03.821354
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
244 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:31.055214
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.029795
INFO:teigen.tgmain:time before volume save: 0:00:00.029795
INFO:teigen.tgmain:time after volume save: 0:00:00.477722
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:49:37.330569
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
245 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:01.951744
INFO:teigen.tgmain:time before volume generate: 0:00:00.021048
INFO:teigen.tgmain:time before volume save: 0:00:00.021048
INFO:teigen.tgmain:time after volume save: 0:00:00.039773
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:49:41.047377
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
246 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:02.389720
INFO:teigen.tgmain:time before volume generate: 0:00:00.023578
INFO:teigen.tgmain:time before volume save: 0:00:00.023578
INFO:teigen.tgmain:time after volume save: 0:00:00.042974
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:49:45.413575
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
247 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:02.826783
INFO:teigen.tgmain:time before volume generate: 0:00:00.031935
INFO:teigen.tgmain:time before volume save: 0:00:00.031935
INFO:teigen.tgmain:time after volume save: 0:00:00.065231
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:49:50.578753
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
248 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:03.076992
INFO:teigen.tgmain:time before volume generate: 0:00:00.029809
INFO:teigen.tgmain:time before volume save: 0:00:00.029809
INFO:teigen.tgmain:time after volume save: 0:00:00.058254
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:49:55.855047
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
249 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
INFO:teigen.tgmain:time: 0:00:02.423362
INFO:teigen.tgmain:time before volume generate: 0:00:00.020399
INFO:teigen.tgmain:time before volume save: 0:00:00.020399
INFO:teigen.tgmain:time after volume save: 0:00:00.042409
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:50:00.108601
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
250 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:04.543202
INFO:teigen.tgmain:time before volume generate: 0:00:00.029570
INFO:teigen.tgmain:time before volume save: 0:00:00.029570
INFO:teigen.tgmain:time after volume save: 0:00:00.072386
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:50:06.439943
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
251 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:04.541803
INFO:teigen.tgmain:time before volume generate: 0:00:00.019190
INFO:teigen.tgmain:time before volume save: 0:00:00.019190
INFO:teigen.tgmain:time after volume save: 0:00:00.074688
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:50:12.896966
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
252 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
INFO:teigen.tgmain:time: 0:00:05.640493
INFO:teigen.tgmain:time before volume generate: 0:00:00.019650
INFO:teigen.tgmain:time before volume save: 0:00:00.019650
INFO:teigen.tgmain:time after volume save: 0:00:00.063147
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:50:20.256148
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
253 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:05.293015
INFO:teigen.tgmain:time before volume generate: 0:00:00.019831
INFO:teigen.tgmain:time before volume save: 0:00:00.019831
INFO:teigen.tgmain:time after volume save: 0:00:00.061872
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:50:27.281479
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
254 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
INFO:teigen.tgmain:time: 0:00:05.444421
INFO:teigen.tgmain:time before volume generate: 0:00:00.023350
INFO:teigen.tgmain:time before volume save: 0:00:00.023350
INFO:teigen.tgmain:time after volume save: 0:00:00.070795
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:50:34.498018
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
255 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:08.406313
INFO:teigen.tgmain:time before volume generate: 0:00:00.020532
INFO:teigen.tgmain:time before volume save: 0:00:00.020532
INFO:teigen.tgmain:time after volume save: 0:00:00.086331
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:50:44.668903
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
256 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
INFO:teigen.tgmain:time: 0:00:08.398071
INFO:teigen.tgmain:time before volume generate: 0:00:00.019451
INFO:teigen.tgmain:time before volume save: 0:00:00.019451
INFO:teigen.tgmain:time after volume save: 0:00:00.077698
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:50:54.798227
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
257 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:11.321878
INFO:teigen.tgmain:time before volume generate: 0:00:00.020240
INFO:teigen.tgmain:time before volume save: 0:00:00.020240
INFO:teigen.tgmain:time after volume save: 0:00:00.097382
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:51:08.003212
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
258 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:10.266684
INFO:teigen.tgmain:time before volume generate: 0:00:00.019848
INFO:teigen.tgmain:time before volume save: 0:00:00.019848
INFO:teigen.tgmain:time after volume save: 0:00:00.100291
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:51:20.029526
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
259 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:11.679030
INFO:teigen.tgmain:time before volume generate: 0:00:00.024853
INFO:teigen.tgmain:time before volume save: 0:00:00.024853
INFO:teigen.tgmain:time after volume save: 0:00:00.120547
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:51:34.102940
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
260 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
INFO:teigen.tgmain:time: 0:00:14.715008
INFO:teigen.tgmain:time before volume generate: 0:00:00.019563
INFO:teigen.tgmain:time before volume save: 0:00:00.019563
INFO:teigen.tgmain:time after volume save: 0:00:00.113386
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:51:50.636837
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
261 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:14.716240
INFO:teigen.tgmain:time before volume generate: 0:00:00.020562
INFO:teigen.tgmain:time before volume save: 0:00:00.020562
INFO:teigen.tgmain:time after volume save: 0:00:00.115074
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:52:07.157342
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
262 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:19.732370
INFO:teigen.tgmain:time before volume generate: 0:00:00.019843
INFO:teigen.tgmain:time before volume save: 0:00:00.019843
INFO:teigen.tgmain:time after volume save: 0:00:00.153904
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:52:28.707061
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
263 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:17.763577
INFO:teigen.tgmain:time before volume generate: 0:00:00.020239
INFO:teigen.tgmain:time before volume save: 0:00:00.020239
INFO:teigen.tgmain:time after volume save: 0:00:00.141325
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:52:48.349522
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
264 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:17.554448
INFO:teigen.tgmain:time before volume generate: 0:00:00.020225
INFO:teigen.tgmain:time before volume save: 0:00:00.020225
INFO:teigen.tgmain:time after volume save: 0:00:00.139010
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:53:07.703056
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
265 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:23.729538
INFO:teigen.tgmain:time before volume generate: 0:00:00.019787
INFO:teigen.tgmain:time before volume save: 0:00:00.019787
INFO:teigen.tgmain:time after volume save: 0:00:00.158008
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:53:33.278937
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
266 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
INFO:teigen.tgmain:time: 0:00:23.700571
INFO:teigen.tgmain:time before volume generate: 0:00:00.020321
INFO:teigen.tgmain:time before volume save: 0:00:00.020321
INFO:teigen.tgmain:time after volume save: 0:00:00.165326
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:53:58.813829
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
267 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:45.214858
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.020400
INFO:teigen.tgmain:time before volume save: 0:00:00.020400
INFO:teigen.tgmain:time after volume save: 0:00:00.192309
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:54:45.946616
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
268 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:40.675804
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.019690
INFO:teigen.tgmain:time before volume save: 0:00:00.019690
INFO:teigen.tgmain:time after volume save: 0:00:00.187595
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:55:28.479635
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
269 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
INFO:teigen.tgmain:time: 0:00:39.898148
generate vtk finished
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023835
INFO:teigen.tgmain:time before volume save: 0:00:00.023835
INFO:teigen.tgmain:time after volume save: 0:00:00.193975
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:56:10.336458
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
270 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:50.013066
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.020183
INFO:teigen.tgmain:time before volume save: 0:00:00.020183
INFO:teigen.tgmain:time after volume save: 0:00:00.217762
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:57:02.293025
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
271 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:50.646321
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.019724
INFO:teigen.tgmain:time before volume save: 0:00:00.019724
INFO:teigen.tgmain:time after volume save: 0:00:00.216787
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:57:54.842870
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
272 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:01:06.893258
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.027705
INFO:teigen.tgmain:time before volume save: 0:00:00.027705
INFO:teigen.tgmain:time after volume save: 0:00:00.281720
INFO:teigen.tgmain:step1_init_datetime2017-10-12 18:59:03.757772
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
273 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:59.202968
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.029975
INFO:teigen.tgmain:time before volume save: 0:00:00.029975
INFO:teigen.tgmain:time after volume save: 0:00:00.258910
INFO:teigen.tgmain:step1_init_datetime2017-10-12 19:00:04.912452
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
274 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:58.858974
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.019933
INFO:teigen.tgmain:time before volume save: 0:00:00.019933
INFO:teigen.tgmain:time after volume save: 0:00:00.246510
INFO:teigen.tgmain:step1_init_datetime2017-10-12 19:01:05.700895
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
275 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:01:11.354892
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.020451
INFO:teigen.tgmain:time before volume save: 0:00:00.020451
INFO:teigen.tgmain:time after volume save: 0:00:00.289228
INFO:teigen.tgmain:step1_init_datetime2017-10-12 19:02:19.084938
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
276 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:01:11.417237
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.019958
INFO:teigen.tgmain:time before volume save: 0:00:00.019958
INFO:teigen.tgmain:time after volume save: 0:00:00.278393
INFO:teigen.tgmain:step1_init_datetime2017-10-12 19:03:32.504508
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
277 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:01:35.672503
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.019868
INFO:teigen.tgmain:time before volume save: 0:00:00.019868
INFO:teigen.tgmain:time after volume save: 0:00:00.333772
INFO:teigen.tgmain:step1_init_datetime2017-10-12 19:05:10.617194
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
278 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:01:22.815869
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.019665
INFO:teigen.tgmain:time before volume save: 0:00:00.019665
INFO:teigen.tgmain:time after volume save: 0:00:00.322236
INFO:teigen.tgmain:step1_init_datetime2017-10-12 19:06:35.475279
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
279 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:01:21.560914
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.019973
INFO:teigen.tgmain:time before volume save: 0:00:00.019973
INFO:teigen.tgmain:time after volume save: 0:00:00.326833
INFO:teigen.tgmain:step1_init_datetime2017-10-12 19:07:59.140088
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
280 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:25.195127
INFO:teigen.tgmain:time before volume generate: 0:00:00.023054
INFO:teigen.tgmain:time before volume save: 0:00:00.023054
INFO:teigen.tgmain:time after volume save: 0:00:00.047297
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 19:08:26.034060
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
281 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:25.091731
INFO:teigen.tgmain:time before volume generate: 0:00:00.023370
INFO:teigen.tgmain:time before volume save: 0:00:00.023370
INFO:teigen.tgmain:time after volume save: 0:00:00.047928
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 19:08:52.821118
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
282 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.080647
INFO:teigen.tgmain:time before volume generate: 0:00:00.024078
INFO:teigen.tgmain:time before volume save: 0:00:00.024078
INFO:teigen.tgmain:time after volume save: 0:00:00.055932
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 19:09:20.627572
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
283 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:25.954004
INFO:teigen.tgmain:time before volume generate: 0:00:00.029997
INFO:teigen.tgmain:time before volume save: 0:00:00.029997
INFO:teigen.tgmain:time after volume save: 0:00:00.065070
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 19:09:48.421614
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
284 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.301580
INFO:teigen.tgmain:time before volume generate: 0:00:00.024478
INFO:teigen.tgmain:time before volume save: 0:00:00.024478
INFO:teigen.tgmain:time after volume save: 0:00:00.056269
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 19:10:16.506450
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
285 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:29.942431
INFO:teigen.tgmain:time before volume generate: 0:00:00.023871
INFO:teigen.tgmain:time before volume save: 0:00:00.023871
INFO:teigen.tgmain:time after volume save: 0:00:00.069833
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 19:10:48.177259
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
286 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:29.885055
INFO:teigen.tgmain:time before volume generate: 0:00:00.024190
INFO:teigen.tgmain:time before volume save: 0:00:00.024190
INFO:teigen.tgmain:time after volume save: 0:00:00.070834
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 19:11:19.792179
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
287 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:32.441930
INFO:teigen.tgmain:time before volume generate: 0:00:00.026126
INFO:teigen.tgmain:time before volume save: 0:00:00.026126
INFO:teigen.tgmain:time after volume save: 0:00:00.091937
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 19:11:54.038486
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
288 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
INFO:teigen.tgmain:time: 0:00:32.040792
INFO:teigen.tgmain:time before volume generate: 0:00:00.023680
INFO:teigen.tgmain:time before volume save: 0:00:00.023680
INFO:teigen.tgmain:time after volume save: 0:00:00.086394
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 19:12:27.821060
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
289 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:31.790507
INFO:teigen.tgmain:time before volume generate: 0:00:00.024084
INFO:teigen.tgmain:time before volume save: 0:00:00.024084
INFO:teigen.tgmain:time after volume save: 0:00:00.091593
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 19:13:01.402742
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
290 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:37.991645
INFO:teigen.tgmain:time before volume generate: 0:00:00.023793
INFO:teigen.tgmain:time before volume save: 0:00:00.023793
INFO:teigen.tgmain:time after volume save: 0:00:00.108961
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 19:13:41.193888
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
291 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:37.950196
INFO:teigen.tgmain:time before volume generate: 0:00:00.025172
INFO:teigen.tgmain:time before volume save: 0:00:00.025172
INFO:teigen.tgmain:time after volume save: 0:00:00.111047
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 19:14:20.957112
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
292 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:43.322428
INFO:teigen.tgmain:time before volume generate: 0:00:00.026442
INFO:teigen.tgmain:time before volume save: 0:00:00.026442
INFO:teigen.tgmain:time after volume save: 0:00:00.139711
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 19:15:06.148170
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
293 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:42.136974
INFO:teigen.tgmain:time before volume generate: 0:00:00.024620
INFO:teigen.tgmain:time before volume save: 0:00:00.024620
INFO:teigen.tgmain:time after volume save: 0:00:00.135418
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 19:15:50.083082
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
294 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:41.871108
INFO:teigen.tgmain:time before volume generate: 0:00:00.025728
INFO:teigen.tgmain:time before volume save: 0:00:00.025728
INFO:teigen.tgmain:time after volume save: 0:00:00.135966
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 19:16:33.778515
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
295 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:50.458674
INFO:teigen.tgmain:time before volume generate: 0:00:00.023955
INFO:teigen.tgmain:time before volume save: 0:00:00.023955
INFO:teigen.tgmain:time after volume save: 0:00:00.160855
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 19:17:26.077814
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
296 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
INFO:teigen.tgmain:time: 0:00:50.178698
INFO:teigen.tgmain:time before volume generate: 0:00:00.024024
INFO:teigen.tgmain:time before volume save: 0:00:00.024024
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
step1 finished
INFO:teigen.tgmain:time after volume save: 0:00:00.173678
INFO:teigen.tgmain:step1_init_datetime2017-10-12 19:18:18.157606
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
297 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:00.307005
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024014
INFO:teigen.tgmain:time before volume save: 0:00:00.024014
INFO:teigen.tgmain:time after volume save: 0:00:00.200845
INFO:teigen.tgmain:step1_init_datetime2017-10-12 19:19:20.369208
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
298 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:56.485998
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.031613
INFO:teigen.tgmain:time before volume save: 0:00:00.031613
INFO:teigen.tgmain:time after volume save: 0:00:00.219474
INFO:teigen.tgmain:step1_init_datetime2017-10-12 19:20:18.796407
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
299 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:56.954555
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023508
INFO:teigen.tgmain:time before volume save: 0:00:00.023508
INFO:teigen.tgmain:time after volume save: 0:00:00.197525
INFO:teigen.tgmain:step1_init_datetime2017-10-12 19:21:17.665875
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
300 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:09.710249
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023399
INFO:teigen.tgmain:time before volume save: 0:00:00.023399
INFO:teigen.tgmain:time after volume save: 0:00:00.228944
INFO:teigen.tgmain:step1_init_datetime2017-10-12 19:22:29.291390
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
301 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:08.792190
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023694
INFO:teigen.tgmain:time before volume save: 0:00:00.023694
INFO:teigen.tgmain:time after volume save: 0:00:00.226467
INFO:teigen.tgmain:step1_init_datetime2017-10-12 19:23:40.014591
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
302 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:53.013207
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023496
INFO:teigen.tgmain:time before volume save: 0:00:00.023496
INFO:teigen.tgmain:time after volume save: 0:00:00.273781
INFO:teigen.tgmain:step1_init_datetime2017-10-12 19:25:35.039763
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
303 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
INFO:teigen.tgmain:time: 0:01:44.445433
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023537
INFO:teigen.tgmain:time before volume save: 0:00:00.023537
INFO:teigen.tgmain:time after volume save: 0:00:00.272854
INFO:teigen.tgmain:step1_init_datetime2017-10-12 19:27:21.511091
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
304 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:43.630399
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024209
INFO:teigen.tgmain:time before volume save: 0:00:00.024209
INFO:teigen.tgmain:time after volume save: 0:00:00.269065
INFO:teigen.tgmain:step1_init_datetime2017-10-12 19:29:07.119442
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
305 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:02:05.149400
generate vtk finished
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.036745
INFO:teigen.tgmain:time before volume save: 0:00:00.036745
INFO:teigen.tgmain:time after volume save: 0:00:00.337983
INFO:teigen.tgmain:step1_init_datetime2017-10-12 19:31:14.427164
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
306 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
INFO:teigen.tgmain:time: 0:02:04.198898
progess: 0.933333333333
generate vtk finished
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023843
INFO:teigen.tgmain:time before volume save: 0:00:00.023843
INFO:teigen.tgmain:time after volume save: 0:00:00.312116
INFO:teigen.tgmain:step1_init_datetime2017-10-12 19:33:20.734495
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
307 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:37.118268
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024120
INFO:teigen.tgmain:time before volume save: 0:00:00.024120
INFO:teigen.tgmain:time after volume save: 0:00:00.393684
INFO:teigen.tgmain:step1_init_datetime2017-10-12 19:36:00.017923
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
308 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:22.637552
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023951
INFO:teigen.tgmain:time before volume save: 0:00:00.023951
INFO:teigen.tgmain:time after volume save: 0:00:00.371710
INFO:teigen.tgmain:step1_init_datetime2017-10-12 19:38:24.754372
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
309 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:21.619990
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024226
INFO:teigen.tgmain:time before volume save: 0:00:00.024226
INFO:teigen.tgmain:time after volume save: 0:00:00.355093
INFO:teigen.tgmain:step1_init_datetime2017-10-12 19:40:48.472053
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
310 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:46.602910
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023996
INFO:teigen.tgmain:time before volume save: 0:00:00.023996
INFO:teigen.tgmain:time after volume save: 0:00:00.404977
INFO:teigen.tgmain:step1_init_datetime2017-10-12 19:43:37.252207
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
311 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:47.548431
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023462
INFO:teigen.tgmain:time before volume save: 0:00:00.023462
INFO:teigen.tgmain:time after volume save: 0:00:00.407753
INFO:teigen.tgmain:step1_init_datetime2017-10-12 19:46:26.965080
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
312 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:28:32.431763
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.028407
INFO:teigen.tgmain:time before volume save: 0:00:00.028407
INFO:teigen.tgmain:time after volume save: 0:00:00.491567
INFO:teigen.tgmain:step1_init_datetime2017-10-12 20:15:01.782503
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
313 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:11.868072
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024039
INFO:teigen.tgmain:time before volume save: 0:00:00.024039
INFO:teigen.tgmain:time after volume save: 0:00:00.473794
INFO:teigen.tgmain:step1_init_datetime2017-10-12 20:18:15.856563
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
314 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:21.115283
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.025605
INFO:teigen.tgmain:time before volume save: 0:00:00.025605
INFO:teigen.tgmain:time after volume save: 0:00:00.464879
INFO:teigen.tgmain:step1_init_datetime2017-10-12 20:21:39.254366
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
315 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:28.214427
INFO:teigen.tgmain:time before volume generate: 0:00:00.023408
INFO:teigen.tgmain:time before volume save: 0:00:00.023408
INFO:teigen.tgmain:time after volume save: 0:00:00.048211
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 20:22:09.137999
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
316 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:25.374291
INFO:teigen.tgmain:time before volume generate: 0:00:00.037484
INFO:teigen.tgmain:time before volume save: 0:00:00.037484
INFO:teigen.tgmain:time after volume save: 0:00:00.069419
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 20:22:36.314491
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
317 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.378421
INFO:teigen.tgmain:time before volume generate: 0:00:00.023236
INFO:teigen.tgmain:time before volume save: 0:00:00.023236
INFO:teigen.tgmain:time after volume save: 0:00:00.055059
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 20:23:04.453910
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
318 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:25.937523
INFO:teigen.tgmain:time before volume generate: 0:00:00.024006
INFO:teigen.tgmain:time before volume save: 0:00:00.024006
INFO:teigen.tgmain:time after volume save: 0:00:00.054256
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 20:23:32.088960
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
319 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:25.943961
INFO:teigen.tgmain:time before volume generate: 0:00:00.032234
INFO:teigen.tgmain:time before volume save: 0:00:00.032234
INFO:teigen.tgmain:time after volume save: 0:00:00.075095
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 20:23:59.780995
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
320 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:30.223962
INFO:teigen.tgmain:time before volume generate: 0:00:00.023713
INFO:teigen.tgmain:time before volume save: 0:00:00.023713
INFO:teigen.tgmain:time after volume save: 0:00:00.080088
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 20:24:31.734030
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
321 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:30.254304
INFO:teigen.tgmain:time before volume generate: 0:00:00.028469
INFO:teigen.tgmain:time before volume save: 0:00:00.028469
INFO:teigen.tgmain:time after volume save: 0:00:00.075672
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 20:25:03.765493
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
322 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:32.922398
INFO:teigen.tgmain:time before volume generate: 0:00:00.024192
INFO:teigen.tgmain:time before volume save: 0:00:00.024192
INFO:teigen.tgmain:time after volume save: 0:00:00.090357
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 20:25:38.456121
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
323 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:31.910235
INFO:teigen.tgmain:time before volume generate: 0:00:00.023975
INFO:teigen.tgmain:time before volume save: 0:00:00.023975
INFO:teigen.tgmain:time after volume save: 0:00:00.087486
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 20:26:12.123136
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
324 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:31.938856
INFO:teigen.tgmain:time before volume generate: 0:00:00.024869
INFO:teigen.tgmain:time before volume save: 0:00:00.024869
INFO:teigen.tgmain:time after volume save: 0:00:00.102231
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 20:26:45.914347
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
325 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:00:38.589230
INFO:teigen.tgmain:time before volume generate: 0:00:00.029049
INFO:teigen.tgmain:time before volume save: 0:00:00.029049
INFO:teigen.tgmain:time after volume save: 0:00:00.121464
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 20:27:26.450545
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
326 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:38.009253
INFO:teigen.tgmain:time before volume generate: 0:00:00.024189
INFO:teigen.tgmain:time before volume save: 0:00:00.024189
INFO:teigen.tgmain:time after volume save: 0:00:00.109615
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 20:28:06.309749
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
327 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:43.399685
INFO:teigen.tgmain:time before volume generate: 0:00:00.024220
INFO:teigen.tgmain:time before volume save: 0:00:00.024220
INFO:teigen.tgmain:time after volume save: 0:00:00.140114
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 20:28:51.518468
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
328 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:42.611184
INFO:teigen.tgmain:time before volume generate: 0:00:00.024590
INFO:teigen.tgmain:time before volume save: 0:00:00.024590
INFO:teigen.tgmain:time after volume save: 0:00:00.140225
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 20:29:36.176384
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
329 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:42.844546
INFO:teigen.tgmain:time before volume generate: 0:00:00.026292
INFO:teigen.tgmain:time before volume save: 0:00:00.026292
INFO:teigen.tgmain:time after volume save: 0:00:00.138651
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 20:30:20.826973
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
330 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:51.239004
INFO:teigen.tgmain:time before volume generate: 0:00:00.027362
step1 finished
INFO:teigen.tgmain:time before volume save: 0:00:00.027362
INFO:teigen.tgmain:time after volume save: 0:00:00.169966
INFO:teigen.tgmain:step1_init_datetime2017-10-12 20:31:14.052960
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
331 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:57.745170
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.030077
INFO:teigen.tgmain:time before volume save: 0:00:00.030077
INFO:teigen.tgmain:time after volume save: 0:00:00.176086
INFO:teigen.tgmain:step1_init_datetime2017-10-12 20:32:13.923752
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
332 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:03.450196
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024583
INFO:teigen.tgmain:time before volume save: 0:00:00.024583
INFO:teigen.tgmain:time after volume save: 0:00:00.203202
INFO:teigen.tgmain:step1_init_datetime2017-10-12 20:33:19.491820
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
333 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:57.637111
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024538
INFO:teigen.tgmain:time before volume save: 0:00:00.024538
INFO:teigen.tgmain:time after volume save: 0:00:00.197614
INFO:teigen.tgmain:step1_init_datetime2017-10-12 20:34:19.095399
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
334 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:57.175138
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024480
INFO:teigen.tgmain:time before volume save: 0:00:00.024480
INFO:teigen.tgmain:time after volume save: 0:00:00.195464
INFO:teigen.tgmain:step1_init_datetime2017-10-12 20:35:18.157161
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
335 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:11.099937
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.030268
INFO:teigen.tgmain:time before volume save: 0:00:00.030268
INFO:teigen.tgmain:time after volume save: 0:00:00.283073
INFO:teigen.tgmain:step1_init_datetime2017-10-12 20:36:31.726542
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
336 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:13.882494
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024878
INFO:teigen.tgmain:time before volume save: 0:00:00.024878
INFO:teigen.tgmain:time after volume save: 0:00:00.231066
INFO:teigen.tgmain:step1_init_datetime2017-10-12 20:37:47.637011
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
337 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:56.649254
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.043116
INFO:teigen.tgmain:time before volume save: 0:00:00.043116
INFO:teigen.tgmain:time after volume save: 0:00:00.299164
INFO:teigen.tgmain:step1_init_datetime2017-10-12 20:39:46.613181
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
338 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:49.859088
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.025225
INFO:teigen.tgmain:time before volume save: 0:00:00.025225
INFO:teigen.tgmain:time after volume save: 0:00:00.288686
INFO:teigen.tgmain:step1_init_datetime2017-10-12 20:41:38.595028
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
339 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:57.156324
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.033231
INFO:teigen.tgmain:time before volume save: 0:00:00.033231
INFO:teigen.tgmain:time after volume save: 0:00:00.325030
INFO:teigen.tgmain:step1_init_datetime2017-10-12 20:43:38.219855
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
340 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:21.889992
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.029665
INFO:teigen.tgmain:time before volume save: 0:00:00.029665
INFO:teigen.tgmain:time after volume save: 0:00:00.352024
INFO:teigen.tgmain:step1_init_datetime2017-10-12 20:46:02.541631
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
341 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:21.902306
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.031755
INFO:teigen.tgmain:time before volume save: 0:00:00.031755
INFO:teigen.tgmain:time after volume save: 0:00:00.412659
INFO:teigen.tgmain:step1_init_datetime2017-10-12 20:48:27.335660
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
342 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:09.044848
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.026306
INFO:teigen.tgmain:time before volume save: 0:00:00.026306
INFO:teigen.tgmain:time after volume save: 0:00:00.385271
INFO:teigen.tgmain:step1_init_datetime2017-10-12 20:51:38.632585
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
343 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:49.224202
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.044385
INFO:teigen.tgmain:time before volume save: 0:00:00.044385
INFO:teigen.tgmain:time after volume save: 0:00:00.543678
INFO:teigen.tgmain:step1_init_datetime2017-10-12 20:54:30.462305
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
344 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:26.505130
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024464
INFO:teigen.tgmain:time before volume save: 0:00:00.024464
INFO:teigen.tgmain:time after volume save: 0:00:00.377756
INFO:teigen.tgmain:step1_init_datetime2017-10-12 20:56:59.101802
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
345 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:09.969873
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.042055
INFO:teigen.tgmain:time before volume save: 0:00:00.042055
INFO:teigen.tgmain:time after volume save: 0:00:00.512586
INFO:teigen.tgmain:step1_init_datetime2017-10-12 21:00:11.614143
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
346 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:54.512889
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024426
INFO:teigen.tgmain:time before volume save: 0:00:00.024426
INFO:teigen.tgmain:time after volume save: 0:00:00.433869
INFO:teigen.tgmain:step1_init_datetime2017-10-12 21:03:08.441938
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
347 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:52.859727
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.037461
INFO:teigen.tgmain:time before volume save: 0:00:00.037461
INFO:teigen.tgmain:time after volume save: 0:00:00.684809
INFO:teigen.tgmain:step1_init_datetime2017-10-12 21:07:04.194809
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
348 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:42.632536
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.032084
INFO:teigen.tgmain:time before volume save: 0:00:00.032084
INFO:teigen.tgmain:time after volume save: 0:00:00.482381
INFO:teigen.tgmain:step1_init_datetime2017-10-12 21:10:49.194448
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
349 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:22.886222
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.030144
INFO:teigen.tgmain:time before volume save: 0:00:00.030144
INFO:teigen.tgmain:time after volume save: 0:00:00.485463
INFO:teigen.tgmain:step1_init_datetime2017-10-12 21:14:14.362006
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
350 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:25.948664
INFO:teigen.tgmain:time before volume generate: 0:00:00.049861
INFO:teigen.tgmain:time before volume save: 0:00:00.049861
INFO:teigen.tgmain:time after volume save: 0:00:00.080422
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 21:14:42.117904
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
351 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.258524
INFO:teigen.tgmain:time before volume generate: 0:00:00.023918
INFO:teigen.tgmain:time before volume save: 0:00:00.023918
INFO:teigen.tgmain:time after volume save: 0:00:00.047297
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 21:15:10.088930
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
352 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:27.173417
INFO:teigen.tgmain:time before volume generate: 0:00:00.025818
INFO:teigen.tgmain:time before volume save: 0:00:00.025818
INFO:teigen.tgmain:time after volume save: 0:00:00.063363
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 21:15:39.037394
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
353 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.565711
INFO:teigen.tgmain:time before volume generate: 0:00:00.024474
INFO:teigen.tgmain:time before volume save: 0:00:00.024474
INFO:teigen.tgmain:time after volume save: 0:00:00.055168
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 21:16:07.314207
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
354 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.267731
INFO:teigen.tgmain:time before volume generate: 0:00:00.048147
INFO:teigen.tgmain:time before volume save: 0:00:00.048147
INFO:teigen.tgmain:time after volume save: 0:00:00.099155
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 21:16:35.422566
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
355 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:31.559806
INFO:teigen.tgmain:time before volume generate: 0:00:00.028185
INFO:teigen.tgmain:time before volume save: 0:00:00.028185
INFO:teigen.tgmain:time after volume save: 0:00:00.081310
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 21:17:09.379281
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
356 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:35.140022
INFO:teigen.tgmain:time before volume generate: 0:00:00.028513
INFO:teigen.tgmain:time before volume save: 0:00:00.028513
INFO:teigen.tgmain:time after volume save: 0:00:00.077627
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 21:17:46.360027
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
357 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:33.533961
INFO:teigen.tgmain:time before volume generate: 0:00:00.023583
INFO:teigen.tgmain:time before volume save: 0:00:00.023583
INFO:teigen.tgmain:time after volume save: 0:00:00.087283
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 21:18:21.847593
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
358 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:32.977450
INFO:teigen.tgmain:time before volume generate: 0:00:00.033037
INFO:teigen.tgmain:time before volume save: 0:00:00.033037
INFO:teigen.tgmain:time after volume save: 0:00:00.106267
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 21:18:56.637092
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
359 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:32.252914
INFO:teigen.tgmain:time before volume generate: 0:00:00.023375
INFO:teigen.tgmain:time before volume save: 0:00:00.023375
INFO:teigen.tgmain:time after volume save: 0:00:00.091788
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 21:19:30.687399
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
360 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:38.450220
INFO:teigen.tgmain:time before volume generate: 0:00:00.023687
INFO:teigen.tgmain:time before volume save: 0:00:00.023687
INFO:teigen.tgmain:time after volume save: 0:00:00.108346
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 21:20:10.917344
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
361 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:38.824657
INFO:teigen.tgmain:time before volume generate: 0:00:00.023320
INFO:teigen.tgmain:time before volume save: 0:00:00.023320
INFO:teigen.tgmain:time after volume save: 0:00:00.106402
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 21:20:51.571223
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
362 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:46.151599
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.033039
INFO:teigen.tgmain:time before volume save: 0:00:00.033039
INFO:teigen.tgmain:time after volume save: 0:00:00.157354
INFO:teigen.tgmain:step1_init_datetime2017-10-12 21:21:39.785492
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
363 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:43.042224
INFO:teigen.tgmain:time before volume generate: 0:00:00.025299
INFO:teigen.tgmain:time before volume save: 0:00:00.025299
INFO:teigen.tgmain:time after volume save: 0:00:00.136646
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 21:22:24.645958
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
364 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:42.925319
INFO:teigen.tgmain:time before volume generate: 0:00:00.025432
INFO:teigen.tgmain:time before volume save: 0:00:00.025432
INFO:teigen.tgmain:time after volume save: 0:00:00.135542
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 21:23:09.470753
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
365 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:52.119284
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024104
INFO:teigen.tgmain:time before volume save: 0:00:00.024104
INFO:teigen.tgmain:time after volume save: 0:00:00.207192
INFO:teigen.tgmain:step1_init_datetime2017-10-12 21:24:03.645153
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
366 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:55.989701
INFO:teigen.tgmain:time before volume generate: 0:00:00.024423
INFO:teigen.tgmain:time before volume save: 0:00:00.024423
INFO:teigen.tgmain:time after volume save: 0:00:00.165943
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 21:25:01.661268
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
367 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:06.178382
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.030044
INFO:teigen.tgmain:time before volume save: 0:00:00.030044
INFO:teigen.tgmain:time after volume save: 0:00:00.225372
INFO:teigen.tgmain:step1_init_datetime2017-10-12 21:26:09.914929
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
368 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:59.583143
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024196
INFO:teigen.tgmain:time before volume save: 0:00:00.024196
INFO:teigen.tgmain:time after volume save: 0:00:00.196169
INFO:teigen.tgmain:step1_init_datetime2017-10-12 21:27:11.410001
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
369 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:58.630032
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023808
INFO:teigen.tgmain:time before volume save: 0:00:00.023808
INFO:teigen.tgmain:time after volume save: 0:00:00.192645
INFO:teigen.tgmain:step1_init_datetime2017-10-12 21:28:11.962108
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
370 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:10.562490
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024692
INFO:teigen.tgmain:time before volume save: 0:00:00.024692
INFO:teigen.tgmain:time after volume save: 0:00:00.230474
INFO:teigen.tgmain:step1_init_datetime2017-10-12 21:29:24.486742
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
371 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:10.520172
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024176
INFO:teigen.tgmain:time before volume save: 0:00:00.024176
INFO:teigen.tgmain:time after volume save: 0:00:00.229152
INFO:teigen.tgmain:step1_init_datetime2017-10-12 21:30:37.019174
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
372 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:54.893897
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.033252
INFO:teigen.tgmain:time before volume save: 0:00:00.033252
INFO:teigen.tgmain:time after volume save: 0:00:00.377391
INFO:teigen.tgmain:step1_init_datetime2017-10-12 21:32:34.036386
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
373 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:45.826543
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023748
INFO:teigen.tgmain:time before volume save: 0:00:00.023748
INFO:teigen.tgmain:time after volume save: 0:00:00.272122
INFO:teigen.tgmain:step1_init_datetime2017-10-12 21:34:21.883647
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
374 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:45.422978
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.032108
INFO:teigen.tgmain:time before volume save: 0:00:00.032108
INFO:teigen.tgmain:time after volume save: 0:00:00.278284
INFO:teigen.tgmain:step1_init_datetime2017-10-12 21:36:09.390652
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
375 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:06.658348
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.035224
INFO:teigen.tgmain:time before volume save: 0:00:00.035224
INFO:teigen.tgmain:time after volume save: 0:00:00.343058
INFO:teigen.tgmain:step1_init_datetime2017-10-12 21:38:18.264682
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
376 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:02:06.106185
generate vtk finished
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023856
INFO:teigen.tgmain:time before volume save: 0:00:00.023856
INFO:teigen.tgmain:time after volume save: 0:00:00.309715
INFO:teigen.tgmain:step1_init_datetime2017-10-12 21:40:26.461590
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
377 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:39.600763
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.025693
INFO:teigen.tgmain:time before volume save: 0:00:00.025693
INFO:teigen.tgmain:time after volume save: 0:00:00.381205
INFO:teigen.tgmain:step1_init_datetime2017-10-12 21:43:08.222197
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
378 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:24.052997
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024195
INFO:teigen.tgmain:time before volume save: 0:00:00.024195
INFO:teigen.tgmain:time after volume save: 0:00:00.365073
INFO:teigen.tgmain:step1_init_datetime2017-10-12 21:45:34.387003
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
379 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:23.506507
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024244
INFO:teigen.tgmain:time before volume save: 0:00:00.024244
INFO:teigen.tgmain:time after volume save: 0:00:00.377645
INFO:teigen.tgmain:step1_init_datetime2017-10-12 21:48:00.008110
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
380 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:51.682749
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024390
INFO:teigen.tgmain:time before volume save: 0:00:00.024390
INFO:teigen.tgmain:time after volume save: 0:00:00.414957
INFO:teigen.tgmain:step1_init_datetime2017-10-12 21:50:54.022424
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
381 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:50.280238
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.030477
INFO:teigen.tgmain:time before volume save: 0:00:00.030477
INFO:teigen.tgmain:time after volume save: 0:00:00.418465
INFO:teigen.tgmain:step1_init_datetime2017-10-12 21:53:46.485684
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
382 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:03:37.487471
generate vtk finished
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024287
INFO:teigen.tgmain:time before volume save: 0:00:00.024287
INFO:teigen.tgmain:time after volume save: 0:00:00.475956
INFO:teigen.tgmain:step1_init_datetime2017-10-12 21:57:26.230245
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
383 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:12.737913
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024569
INFO:teigen.tgmain:time before volume save: 0:00:00.024569
INFO:teigen.tgmain:time after volume save: 0:00:00.475390
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:00:41.314598
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
384 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
INFO:teigen.tgmain:time: 0:03:12.105612
progess: 0.933333333333
generate vtk finished
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024002
INFO:teigen.tgmain:time before volume save: 0:00:00.024002
INFO:teigen.tgmain:time after volume save: 0:00:00.462760
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:03:55.732427
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
385 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.416942
INFO:teigen.tgmain:time before volume generate: 0:00:00.031835
INFO:teigen.tgmain:time before volume save: 0:00:00.031835
INFO:teigen.tgmain:time after volume save: 0:00:00.062329
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:04:23.942087
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
386 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.210435
INFO:teigen.tgmain:time before volume generate: 0:00:00.024835
INFO:teigen.tgmain:time before volume save: 0:00:00.024835
INFO:teigen.tgmain:time after volume save: 0:00:00.049163
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:04:51.964904
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
387 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.796338
INFO:teigen.tgmain:time before volume generate: 0:00:00.024095
INFO:teigen.tgmain:time before volume save: 0:00:00.024095
INFO:teigen.tgmain:time after volume save: 0:00:00.056068
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:05:20.536772
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
388 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.284689
INFO:teigen.tgmain:time before volume generate: 0:00:00.036324
INFO:teigen.tgmain:time before volume save: 0:00:00.036324
INFO:teigen.tgmain:time after volume save: 0:00:00.077726
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:05:48.605260
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
389 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.431897
INFO:teigen.tgmain:time before volume generate: 0:00:00.036891
INFO:teigen.tgmain:time before volume save: 0:00:00.036891
INFO:teigen.tgmain:time after volume save: 0:00:00.078298
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:06:16.830482
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
390 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:30.921872
INFO:teigen.tgmain:time before volume generate: 0:00:00.024136
INFO:teigen.tgmain:time before volume save: 0:00:00.024136
INFO:teigen.tgmain:time after volume save: 0:00:00.071087
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:06:49.554809
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
391 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:30.699545
INFO:teigen.tgmain:time before volume generate: 0:00:00.023907
INFO:teigen.tgmain:time before volume save: 0:00:00.023907
INFO:teigen.tgmain:time after volume save: 0:00:00.081240
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:07:22.100635
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
392 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:32.920190
INFO:teigen.tgmain:time before volume generate: 0:00:00.024547
INFO:teigen.tgmain:time before volume save: 0:00:00.024547
INFO:teigen.tgmain:time after volume save: 0:00:00.088300
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:07:56.782056
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
393 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:32.422301
INFO:teigen.tgmain:time before volume generate: 0:00:00.025572
INFO:teigen.tgmain:time before volume save: 0:00:00.025572
INFO:teigen.tgmain:time after volume save: 0:00:00.090399
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:08:30.976823
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
394 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:32.718630
INFO:teigen.tgmain:time before volume generate: 0:00:00.023963
INFO:teigen.tgmain:time before volume save: 0:00:00.023963
INFO:teigen.tgmain:time after volume save: 0:00:00.096721
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:09:05.569693
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
395 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:38.951852
INFO:teigen.tgmain:time before volume generate: 0:00:00.035150
INFO:teigen.tgmain:time before volume save: 0:00:00.035150
INFO:teigen.tgmain:time after volume save: 0:00:00.135517
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:09:46.401182
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
396 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:39.052709
INFO:teigen.tgmain:time before volume generate: 0:00:00.023991
INFO:teigen.tgmain:time before volume save: 0:00:00.023991
INFO:teigen.tgmain:time after volume save: 0:00:00.109258
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:10:27.258637
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
397 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:00:44.343601
INFO:teigen.tgmain:time before volume generate: 0:00:00.024556
INFO:teigen.tgmain:time before volume save: 0:00:00.024556
INFO:teigen.tgmain:time after volume save: 0:00:00.136527
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:11:13.460400
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
398 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:42.347961
INFO:teigen.tgmain:time before volume generate: 0:00:00.024243
INFO:teigen.tgmain:time before volume save: 0:00:00.024243
INFO:teigen.tgmain:time after volume save: 0:00:00.133702
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:11:57.676006
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
399 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:43.183382
INFO:teigen.tgmain:time before volume generate: 0:00:00.024821
INFO:teigen.tgmain:time before volume save: 0:00:00.024821
INFO:teigen.tgmain:time after volume save: 0:00:00.134439
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:12:42.703042
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
400 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:51.284529
INFO:teigen.tgmain:time before volume generate: 0:00:00.024787
INFO:teigen.tgmain:time before volume save: 0:00:00.024787
INFO:teigen.tgmain:time after volume save: 0:00:00.164018
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:13:35.908490
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
401 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:51.397517
INFO:teigen.tgmain:time before volume generate: 0:00:00.024134
INFO:teigen.tgmain:time before volume save: 0:00:00.024134
step1 finished
INFO:teigen.tgmain:time after volume save: 0:00:00.173238
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:14:29.270047
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
402 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:01.873170
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.035402
INFO:teigen.tgmain:time before volume save: 0:00:00.035402
INFO:teigen.tgmain:time after volume save: 0:00:00.230492
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:15:33.210918
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
403 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:57.621292
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024522
INFO:teigen.tgmain:time before volume save: 0:00:00.024522
INFO:teigen.tgmain:time after volume save: 0:00:00.196980
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:16:32.736264
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
404 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:57.516784
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.036056
INFO:teigen.tgmain:time before volume save: 0:00:00.036056
INFO:teigen.tgmain:time after volume save: 0:00:00.212248
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:17:32.193649
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
405 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:08.862074
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023428
INFO:teigen.tgmain:time before volume save: 0:00:00.023428
INFO:teigen.tgmain:time after volume save: 0:00:00.225701
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:18:43.006496
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
406 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:09.666587
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024391
INFO:teigen.tgmain:time before volume save: 0:00:00.024391
INFO:teigen.tgmain:time after volume save: 0:00:00.271725
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:19:54.647644
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
407 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
INFO:teigen.tgmain:time: 0:01:52.441995
progess: 0.933333333333
generate vtk finished
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024223
INFO:teigen.tgmain:time before volume save: 0:00:00.024223
INFO:teigen.tgmain:time after volume save: 0:00:00.281599
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:21:49.049163
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
408 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:50.647549
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.039139
INFO:teigen.tgmain:time before volume save: 0:00:00.039139
INFO:teigen.tgmain:time after volume save: 0:00:00.424528
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:23:42.157122
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
409 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:09.863290
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.027045
INFO:teigen.tgmain:time before volume save: 0:00:00.027045
INFO:teigen.tgmain:time after volume save: 0:00:00.318304
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:25:54.336454
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
410 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:15.669714
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023994
INFO:teigen.tgmain:time before volume save: 0:00:00.023994
INFO:teigen.tgmain:time after volume save: 0:00:00.323301
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:28:12.055066
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
411 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:05.109115
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023870
INFO:teigen.tgmain:time before volume save: 0:00:00.023870
INFO:teigen.tgmain:time after volume save: 0:00:00.315764
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:30:19.249205
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
412 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:43.928782
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.032904
INFO:teigen.tgmain:time before volume save: 0:00:00.032904
INFO:teigen.tgmain:time after volume save: 0:00:00.388517
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:33:05.406748
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
413 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:22.344399
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023262
INFO:teigen.tgmain:time before volume save: 0:00:00.023262
INFO:teigen.tgmain:time after volume save: 0:00:00.360039
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:35:29.879369
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
414 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:20.936921
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023334
INFO:teigen.tgmain:time before volume save: 0:00:00.023334
INFO:teigen.tgmain:time after volume save: 0:00:00.356794
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:37:53.020034
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
415 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:46.424806
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023416
INFO:teigen.tgmain:time before volume save: 0:00:00.023416
INFO:teigen.tgmain:time after volume save: 0:00:00.401243
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:40:41.690040
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
416 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:02:47.750424
generate vtk finished
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024787
INFO:teigen.tgmain:time before volume save: 0:00:00.024787
INFO:teigen.tgmain:time after volume save: 0:00:00.404196
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:43:31.578082
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
417 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:33.196566
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.025794
INFO:teigen.tgmain:time before volume save: 0:00:00.025794
INFO:teigen.tgmain:time after volume save: 0:00:00.470327
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:47:07.127394
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
418 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:15.223831
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.042046
INFO:teigen.tgmain:time before volume save: 0:00:00.042046
INFO:teigen.tgmain:time after volume save: 0:00:00.505159
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:50:24.924557
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
419 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:17.934368
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.037581
INFO:teigen.tgmain:time before volume save: 0:00:00.037581
INFO:teigen.tgmain:time after volume save: 0:00:00.542578
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:53:45.482428
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
420 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.000081
INFO:teigen.tgmain:time before volume generate: 0:00:00.023832
INFO:teigen.tgmain:time before volume save: 0:00:00.023832
INFO:teigen.tgmain:time after volume save: 0:00:00.048939
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:54:13.188287
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
421 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:25.912937
INFO:teigen.tgmain:time before volume generate: 0:00:00.024158
INFO:teigen.tgmain:time before volume save: 0:00:00.024158
INFO:teigen.tgmain:time after volume save: 0:00:00.047605
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:54:40.849818
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
422 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:27.191834
INFO:teigen.tgmain:time before volume generate: 0:00:00.034649
INFO:teigen.tgmain:time before volume save: 0:00:00.034649
INFO:teigen.tgmain:time after volume save: 0:00:00.077207
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:55:09.885588
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
423 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.444228
INFO:teigen.tgmain:time before volume generate: 0:00:00.028832
INFO:teigen.tgmain:time before volume save: 0:00:00.028832
INFO:teigen.tgmain:time after volume save: 0:00:00.060888
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:55:38.100431
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
424 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.524884
INFO:teigen.tgmain:time before volume generate: 0:00:00.023431
INFO:teigen.tgmain:time before volume save: 0:00:00.023431
INFO:teigen.tgmain:time after volume save: 0:00:00.053583
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:56:06.345428
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
425 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:30.095341
INFO:teigen.tgmain:time before volume generate: 0:00:00.023787
INFO:teigen.tgmain:time before volume save: 0:00:00.023787
INFO:teigen.tgmain:time after volume save: 0:00:00.071158
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:56:38.173461
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
426 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:30.727647
INFO:teigen.tgmain:time before volume generate: 0:00:00.025365
INFO:teigen.tgmain:time before volume save: 0:00:00.025365
INFO:teigen.tgmain:time after volume save: 0:00:00.071882
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:57:10.641379
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
427 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:33.002698
INFO:teigen.tgmain:time before volume generate: 0:00:00.024188
INFO:teigen.tgmain:time before volume save: 0:00:00.024188
INFO:teigen.tgmain:time after volume save: 0:00:00.088134
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:57:45.436565
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
428 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:31.997004
INFO:teigen.tgmain:time before volume generate: 0:00:00.023347
INFO:teigen.tgmain:time before volume save: 0:00:00.023347
INFO:teigen.tgmain:time after volume save: 0:00:00.085929
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:58:19.168200
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
429 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:32.118819
INFO:teigen.tgmain:time before volume generate: 0:00:00.024084
INFO:teigen.tgmain:time before volume save: 0:00:00.024084
INFO:teigen.tgmain:time after volume save: 0:00:00.088062
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:58:53.047417
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
430 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
INFO:teigen.tgmain:time: 0:00:37.736170
INFO:teigen.tgmain:time before volume generate: 0:00:00.039942
INFO:teigen.tgmain:time before volume save: 0:00:00.039942
INFO:teigen.tgmain:time after volume save: 0:00:00.150749
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 22:59:32.718289
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
431 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:37.881371
INFO:teigen.tgmain:time before volume generate: 0:00:00.023187
INFO:teigen.tgmain:time before volume save: 0:00:00.023187
INFO:teigen.tgmain:time after volume save: 0:00:00.106444
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:00:12.438792
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
432 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:43.455587
INFO:teigen.tgmain:time before volume generate: 0:00:00.023882
INFO:teigen.tgmain:time before volume save: 0:00:00.023882
INFO:teigen.tgmain:time after volume save: 0:00:00.134848
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:00:57.709849
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
433 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:00:41.550031
generate vtk finished
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.050187
INFO:teigen.tgmain:time before volume save: 0:00:00.050187
INFO:teigen.tgmain:time after volume save: 0:00:00.169047
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:01:41.219398
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
434 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:41.598284
INFO:teigen.tgmain:time before volume generate: 0:00:00.024152
INFO:teigen.tgmain:time before volume save: 0:00:00.024152
INFO:teigen.tgmain:time after volume save: 0:00:00.131310
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:02:24.659152
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
435 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:50.978181
INFO:teigen.tgmain:time before volume generate: 0:00:00.023842
INFO:teigen.tgmain:time before volume save: 0:00:00.023842
INFO:teigen.tgmain:time after volume save: 0:00:00.160216
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:03:17.516721
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
436 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:52.684745
INFO:teigen.tgmain:time before volume generate: 0:00:00.026413
INFO:teigen.tgmain:time before volume save: 0:00:00.026413
step1 finished
INFO:teigen.tgmain:time after volume save: 0:00:00.166657
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:04:12.101422
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
437 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:00.434375
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023280
INFO:teigen.tgmain:time before volume save: 0:00:00.023280
INFO:teigen.tgmain:time after volume save: 0:00:00.195130
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:05:14.406899
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
438 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:56.626166
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023565
INFO:teigen.tgmain:time before volume save: 0:00:00.023565
INFO:teigen.tgmain:time after volume save: 0:00:00.193434
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:06:12.991263
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
439 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:57.188620
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.030341
INFO:teigen.tgmain:time before volume save: 0:00:00.030341
INFO:teigen.tgmain:time after volume save: 0:00:00.213333
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:07:12.111402
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
440 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:09.100778
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023763
INFO:teigen.tgmain:time before volume save: 0:00:00.023763
INFO:teigen.tgmain:time after volume save: 0:00:00.229286
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:08:23.124983
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
441 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:10.059051
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023541
INFO:teigen.tgmain:time before volume save: 0:00:00.023541
INFO:teigen.tgmain:time after volume save: 0:00:00.230030
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:09:35.115455
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
442 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:53.097290
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023393
INFO:teigen.tgmain:time before volume save: 0:00:00.023393
INFO:teigen.tgmain:time after volume save: 0:00:00.282559
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:11:30.190475
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
443 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:44.920803
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023248
INFO:teigen.tgmain:time before volume save: 0:00:00.023248
INFO:teigen.tgmain:time after volume save: 0:00:00.272394
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:13:17.182921
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
444 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:44.607464
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024163
INFO:teigen.tgmain:time before volume save: 0:00:00.024163
INFO:teigen.tgmain:time after volume save: 0:00:00.264836
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:15:03.813129
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
445 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:04.270962
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.027376
INFO:teigen.tgmain:time before volume save: 0:00:00.027376
INFO:teigen.tgmain:time after volume save: 0:00:00.349798
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:17:10.376522
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
446 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:05.394770
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023904
INFO:teigen.tgmain:time before volume save: 0:00:00.023904
INFO:teigen.tgmain:time after volume save: 0:00:00.308029
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:19:17.822462
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
447 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:37.678081
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024281
INFO:teigen.tgmain:time before volume save: 0:00:00.024281
INFO:teigen.tgmain:time after volume save: 0:00:00.363230
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:21:57.693841
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
448 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:23.339287
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023585
INFO:teigen.tgmain:time before volume save: 0:00:00.023585
INFO:teigen.tgmain:time after volume save: 0:00:00.362978
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:24:23.116019
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
449 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:22.011565
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024582
INFO:teigen.tgmain:time before volume save: 0:00:00.024582
INFO:teigen.tgmain:time after volume save: 0:00:00.378453
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:26:47.348966
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
450 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:47.954394
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.028017
INFO:teigen.tgmain:time before volume save: 0:00:00.028017
INFO:teigen.tgmain:time after volume save: 0:00:00.412403
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:29:37.480569
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
451 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:48.115742
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023518
INFO:teigen.tgmain:time before volume save: 0:00:00.023518
INFO:teigen.tgmain:time after volume save: 0:00:00.402323
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:32:27.804805
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
452 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:35.428943
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023393
INFO:teigen.tgmain:time before volume save: 0:00:00.023393
INFO:teigen.tgmain:time after volume save: 0:00:00.493836
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:36:05.482079
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
453 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:03:11.025572
generate vtk finished
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.035717
INFO:teigen.tgmain:time before volume save: 0:00:00.035717
INFO:teigen.tgmain:time after volume save: 0:00:00.495928
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:39:18.822635
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
454 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:08.545301
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024238
INFO:teigen.tgmain:time before volume save: 0:00:00.024238
INFO:teigen.tgmain:time after volume save: 0:00:00.454787
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:42:29.582302
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
455 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:25.680680
INFO:teigen.tgmain:time before volume generate: 0:00:00.023498
INFO:teigen.tgmain:time before volume save: 0:00:00.023498
INFO:teigen.tgmain:time after volume save: 0:00:00.048345
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:42:56.979285
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
456 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:25.405264
INFO:teigen.tgmain:time before volume generate: 0:00:00.030935
INFO:teigen.tgmain:time before volume save: 0:00:00.030935
INFO:teigen.tgmain:time after volume save: 0:00:00.059990
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:43:24.176130
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
457 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.028833
INFO:teigen.tgmain:time before volume generate: 0:00:00.023703
INFO:teigen.tgmain:time before volume save: 0:00:00.023703
INFO:teigen.tgmain:time after volume save: 0:00:00.055620
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:43:51.994473
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
458 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.602903
INFO:teigen.tgmain:time before volume generate: 0:00:00.039647
INFO:teigen.tgmain:time before volume save: 0:00:00.039647
INFO:teigen.tgmain:time after volume save: 0:00:00.083305
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:44:20.422501
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
459 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:25.832100
INFO:teigen.tgmain:time before volume generate: 0:00:00.023134
INFO:teigen.tgmain:time before volume save: 0:00:00.023134
INFO:teigen.tgmain:time after volume save: 0:00:00.053205
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:44:48.017068
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
460 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:30.426572
INFO:teigen.tgmain:time before volume generate: 0:00:00.023359
INFO:teigen.tgmain:time before volume save: 0:00:00.023359
INFO:teigen.tgmain:time after volume save: 0:00:00.069462
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:45:20.168997
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
461 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:30.004046
INFO:teigen.tgmain:time before volume generate: 0:00:00.023214
INFO:teigen.tgmain:time before volume save: 0:00:00.023214
INFO:teigen.tgmain:time after volume save: 0:00:00.069177
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:45:52.057342
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
462 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:32.681202
INFO:teigen.tgmain:time before volume generate: 0:00:00.023193
INFO:teigen.tgmain:time before volume save: 0:00:00.023193
INFO:teigen.tgmain:time after volume save: 0:00:00.086251
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:46:26.517823
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
463 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:32.140165
INFO:teigen.tgmain:time before volume generate: 0:00:00.023300
INFO:teigen.tgmain:time before volume save: 0:00:00.023300
INFO:teigen.tgmain:time after volume save: 0:00:00.084929
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:47:00.404623
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
464 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:31.961369
INFO:teigen.tgmain:time before volume generate: 0:00:00.023335
INFO:teigen.tgmain:time before volume save: 0:00:00.023335
INFO:teigen.tgmain:time after volume save: 0:00:00.085033
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:47:34.109107
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
465 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:37.965681
INFO:teigen.tgmain:time before volume generate: 0:00:00.023562
INFO:teigen.tgmain:time before volume save: 0:00:00.023562
INFO:teigen.tgmain:time after volume save: 0:00:00.106656
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:48:13.868880
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
466 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:38.466246
INFO:teigen.tgmain:time before volume generate: 0:00:00.023735
INFO:teigen.tgmain:time before volume save: 0:00:00.023735
INFO:teigen.tgmain:time after volume save: 0:00:00.109882
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:48:54.093677
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
467 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:43.818633
INFO:teigen.tgmain:time before volume generate: 0:00:00.023263
INFO:teigen.tgmain:time before volume save: 0:00:00.023263
INFO:teigen.tgmain:time after volume save: 0:00:00.132957
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:49:39.722416
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
468 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:00:41.700572
INFO:teigen.tgmain:time before volume generate: 0:00:00.034341
INFO:teigen.tgmain:time before volume save: 0:00:00.034341
INFO:teigen.tgmain:time after volume save: 0:00:00.158647
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:50:23.274112
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
469 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:41.787810
INFO:teigen.tgmain:time before volume generate: 0:00:00.022960
INFO:teigen.tgmain:time before volume save: 0:00:00.022960
INFO:teigen.tgmain:time after volume save: 0:00:00.138031
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:51:06.865953
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
470 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:50.074611
INFO:teigen.tgmain:time before volume generate: 0:00:00.023131
INFO:teigen.tgmain:time before volume save: 0:00:00.023131
INFO:teigen.tgmain:time after volume save: 0:00:00.158198
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:51:58.782927
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
471 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:51.114868
INFO:teigen.tgmain:time before volume generate: 0:00:00.023099
INFO:teigen.tgmain:time before volume save: 0:00:00.023099
INFO:teigen.tgmain:time after volume save: 0:00:00.157542
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:52:51.754070
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
472 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:00.372512
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023735
INFO:teigen.tgmain:time before volume save: 0:00:00.023735
INFO:teigen.tgmain:time after volume save: 0:00:00.194888
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:53:54.003325
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
473 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:57.403448
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023373
INFO:teigen.tgmain:time before volume save: 0:00:00.023373
INFO:teigen.tgmain:time after volume save: 0:00:00.193284
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:54:53.287017
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
474 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:00:56.513379
generate vtk finished
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023708
INFO:teigen.tgmain:time before volume save: 0:00:00.023708
INFO:teigen.tgmain:time after volume save: 0:00:00.190015
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:55:51.694447
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
475 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:09.544191
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023157
INFO:teigen.tgmain:time before volume save: 0:00:00.023157
INFO:teigen.tgmain:time after volume save: 0:00:00.232402
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:57:03.233528
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
476 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:09.066372
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023608
INFO:teigen.tgmain:time before volume save: 0:00:00.023608
INFO:teigen.tgmain:time after volume save: 0:00:00.228207
INFO:teigen.tgmain:step1_init_datetime2017-10-12 23:58:14.223235
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
477 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:53.264623
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.044048
INFO:teigen.tgmain:time before volume save: 0:00:00.044048
INFO:teigen.tgmain:time after volume save: 0:00:00.321940
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:00:09.855192
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
478 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:44.310097
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023098
INFO:teigen.tgmain:time before volume save: 0:00:00.023098
INFO:teigen.tgmain:time after volume save: 0:00:00.270704
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:01:56.171201
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
479 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:44.367346
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023662
INFO:teigen.tgmain:time before volume save: 0:00:00.023662
INFO:teigen.tgmain:time after volume save: 0:00:00.265938
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:03:42.564269
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
480 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
INFO:teigen.tgmain:time: 0:02:04.624723
progess: 0.933333333333
generate vtk finished
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024037
INFO:teigen.tgmain:time before volume save: 0:00:00.024037
INFO:teigen.tgmain:time after volume save: 0:00:00.310062
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:05:49.227754
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
481 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:04.348478
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023274
INFO:teigen.tgmain:time before volume save: 0:00:00.023274
INFO:teigen.tgmain:time after volume save: 0:00:00.306247
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:07:55.604267
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
482 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:37.185471
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023633
INFO:teigen.tgmain:time before volume save: 0:00:00.023633
INFO:teigen.tgmain:time after volume save: 0:00:00.360330
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:10:34.917954
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
483 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:22.806565
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023518
INFO:teigen.tgmain:time before volume save: 0:00:00.023518
INFO:teigen.tgmain:time after volume save: 0:00:00.358095
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:12:59.835993
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
484 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:21.632049
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.030537
INFO:teigen.tgmain:time before volume save: 0:00:00.030537
INFO:teigen.tgmain:time after volume save: 0:00:00.369941
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:15:23.649942
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
485 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:48.163422
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.038999
INFO:teigen.tgmain:time before volume save: 0:00:00.038999
INFO:teigen.tgmain:time after volume save: 0:00:00.441280
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:18:14.080103
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
486 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:48.410192
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024342
INFO:teigen.tgmain:time before volume save: 0:00:00.024342
INFO:teigen.tgmain:time after volume save: 0:00:00.444549
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:21:04.849025
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
487 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:34.303471
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023404
INFO:teigen.tgmain:time before volume save: 0:00:00.023404
INFO:teigen.tgmain:time after volume save: 0:00:00.491099
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:24:41.438677
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
488 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:12.090279
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.034950
INFO:teigen.tgmain:time before volume save: 0:00:00.034950
INFO:teigen.tgmain:time after volume save: 0:00:00.492829
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:27:55.783240
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
489 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:09.886525
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.046026
INFO:teigen.tgmain:time before volume save: 0:00:00.046026
INFO:teigen.tgmain:time after volume save: 0:00:00.514329
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:31:08.181795
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
490 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
INFO:teigen.tgmain:time: 0:00:01.922399
INFO:teigen.tgmain:time before volume generate: 0:00:00.023723
INFO:teigen.tgmain:time before volume save: 0:00:00.023723
INFO:teigen.tgmain:time after volume save: 0:00:00.043985
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:31:11.848106
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
491 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
INFO:teigen.tgmain:time: 0:00:01.931907
INFO:teigen.tgmain:time before volume generate: 0:00:00.038332
INFO:teigen.tgmain:time before volume save: 0:00:00.038332
INFO:teigen.tgmain:time after volume save: 0:00:00.066475
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:31:15.573803
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
492 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:02.332558
INFO:teigen.tgmain:time before volume generate: 0:00:00.019293
INFO:teigen.tgmain:time before volume save: 0:00:00.019293
INFO:teigen.tgmain:time after volume save: 0:00:00.040993
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:31:19.702851
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
493 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:02.100318
INFO:teigen.tgmain:time before volume generate: 0:00:00.019199
INFO:teigen.tgmain:time before volume save: 0:00:00.019199
INFO:teigen.tgmain:time after volume save: 0:00:00.039969
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:31:23.570373
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
494 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:02.287649
INFO:teigen.tgmain:time before volume generate: 0:00:00.019777
INFO:teigen.tgmain:time before volume save: 0:00:00.019777
INFO:teigen.tgmain:time after volume save: 0:00:00.040834
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:31:27.612602
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
495 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:04.597568
INFO:teigen.tgmain:time before volume generate: 0:00:00.019222
INFO:teigen.tgmain:time before volume save: 0:00:00.019222
INFO:teigen.tgmain:time after volume save: 0:00:00.050650
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:31:33.926174
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
496 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
INFO:teigen.tgmain:time: 0:00:04.428358
INFO:teigen.tgmain:time before volume generate: 0:00:00.023381
INFO:teigen.tgmain:time before volume save: 0:00:00.023381
INFO:teigen.tgmain:time after volume save: 0:00:00.054909
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:31:40.061682
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
497 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:05.650561
INFO:teigen.tgmain:time before volume generate: 0:00:00.026838
INFO:teigen.tgmain:time before volume save: 0:00:00.026838
INFO:teigen.tgmain:time after volume save: 0:00:00.080217
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:31:47.549538
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
498 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
INFO:teigen.tgmain:time: 0:00:05.183365
INFO:teigen.tgmain:time before volume generate: 0:00:00.030240
INFO:teigen.tgmain:time before volume save: 0:00:00.030240
INFO:teigen.tgmain:time after volume save: 0:00:00.087546
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:31:54.599145
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
499 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:05.323041
INFO:teigen.tgmain:time before volume generate: 0:00:00.019509
INFO:teigen.tgmain:time before volume save: 0:00:00.019509
INFO:teigen.tgmain:time after volume save: 0:00:00.061146
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:32:01.661546
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
500 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:08.797927
INFO:teigen.tgmain:time before volume generate: 0:00:00.018981
INFO:teigen.tgmain:time before volume save: 0:00:00.018981
INFO:teigen.tgmain:time after volume save: 0:00:00.076743
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:32:12.202105
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
501 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:08.411678
INFO:teigen.tgmain:time before volume generate: 0:00:00.019403
INFO:teigen.tgmain:time before volume save: 0:00:00.019403
INFO:teigen.tgmain:time after volume save: 0:00:00.079459
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:32:22.386737
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
502 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:11.203395
INFO:teigen.tgmain:time before volume generate: 0:00:00.031886
INFO:teigen.tgmain:time before volume save: 0:00:00.031886
INFO:teigen.tgmain:time after volume save: 0:00:00.133476
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:32:35.422795
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
503 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:10.246806
INFO:teigen.tgmain:time before volume generate: 0:00:00.020497
INFO:teigen.tgmain:time before volume save: 0:00:00.020497
INFO:teigen.tgmain:time after volume save: 0:00:00.098564
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:32:47.575008
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
504 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:10.139880
INFO:teigen.tgmain:time before volume generate: 0:00:00.019222
INFO:teigen.tgmain:time before volume save: 0:00:00.019222
INFO:teigen.tgmain:time after volume save: 0:00:00.091492
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:32:59.486576
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
505 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:14.629480
INFO:teigen.tgmain:time before volume generate: 0:00:00.019852
INFO:teigen.tgmain:time before volume save: 0:00:00.019852
INFO:teigen.tgmain:time after volume save: 0:00:00.111839
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:33:15.914623
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
506 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:14.489032
INFO:teigen.tgmain:time before volume generate: 0:00:00.018988
INFO:teigen.tgmain:time before volume save: 0:00:00.018988
INFO:teigen.tgmain:time after volume save: 0:00:00.110225
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:33:32.211669
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
507 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:19.525172
INFO:teigen.tgmain:time before volume generate: 0:00:00.019234
INFO:teigen.tgmain:time before volume save: 0:00:00.019234
INFO:teigen.tgmain:time after volume save: 0:00:00.134834
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:33:53.589920
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
508 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:17.695858
INFO:teigen.tgmain:time before volume generate: 0:00:00.019250
INFO:teigen.tgmain:time before volume save: 0:00:00.019250
INFO:teigen.tgmain:time after volume save: 0:00:00.136710
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:34:13.102148
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
509 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:17.717161
INFO:teigen.tgmain:time before volume generate: 0:00:00.019275
INFO:teigen.tgmain:time before volume save: 0:00:00.019275
INFO:teigen.tgmain:time after volume save: 0:00:00.134068
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:34:32.641078
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
510 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:24.399212
INFO:teigen.tgmain:time before volume generate: 0:00:00.019162
INFO:teigen.tgmain:time before volume save: 0:00:00.019162
INFO:teigen.tgmain:time after volume save: 0:00:00.155861
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:34:59.052080
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
511 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:23.893881
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.021417
INFO:teigen.tgmain:time before volume save: 0:00:00.021417
INFO:teigen.tgmain:time after volume save: 0:00:00.193280
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:35:24.953812
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
512 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:45.171954
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.019111
INFO:teigen.tgmain:time before volume save: 0:00:00.019111
INFO:teigen.tgmain:time after volume save: 0:00:00.187576
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:36:12.038566
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
513 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:40.610022
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.019526
INFO:teigen.tgmain:time before volume save: 0:00:00.019526
INFO:teigen.tgmain:time after volume save: 0:00:00.186261
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:36:54.538395
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
514 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:39.880842
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.018901
INFO:teigen.tgmain:time before volume save: 0:00:00.018901
INFO:teigen.tgmain:time after volume save: 0:00:00.182516
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:37:36.318364
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
515 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:50.026416
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023293
INFO:teigen.tgmain:time before volume save: 0:00:00.023293
INFO:teigen.tgmain:time after volume save: 0:00:00.259704
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:38:28.350060
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
516 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:50.556979
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.019935
INFO:teigen.tgmain:time before volume save: 0:00:00.019935
INFO:teigen.tgmain:time after volume save: 0:00:00.213053
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:39:20.835030
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
517 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:01:07.221482
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.018988
INFO:teigen.tgmain:time before volume save: 0:00:00.018988
INFO:teigen.tgmain:time after volume save: 0:00:00.254856
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:40:30.115758
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
518 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:59.147131
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.019315
INFO:teigen.tgmain:time before volume save: 0:00:00.019315
INFO:teigen.tgmain:time after volume save: 0:00:00.247353
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:41:31.255087
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
519 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:58.493576
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.019449
INFO:teigen.tgmain:time before volume save: 0:00:00.019449
INFO:teigen.tgmain:time after volume save: 0:00:00.240758
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:42:31.724183
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
520 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
INFO:teigen.tgmain:time: 0:01:11.496330
generate vtk finished
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.019101
INFO:teigen.tgmain:time before volume save: 0:00:00.019101
INFO:teigen.tgmain:time after volume save: 0:00:00.282524
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:43:45.322316
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
521 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:01:11.529596
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.019280
INFO:teigen.tgmain:time before volume save: 0:00:00.019280
INFO:teigen.tgmain:time after volume save: 0:00:00.275748
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:44:58.881530
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
522 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:01:36.430718
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.019358
INFO:teigen.tgmain:time before volume save: 0:00:00.019358
INFO:teigen.tgmain:time after volume save: 0:00:00.319801
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:46:37.491919
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
523 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:01:23.600137
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.019626
INFO:teigen.tgmain:time before volume save: 0:00:00.019626
INFO:teigen.tgmain:time after volume save: 0:00:00.325668
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:48:03.176300
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
524 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:01:22.057216
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.019082
INFO:teigen.tgmain:time before volume save: 0:00:00.019082
INFO:teigen.tgmain:time after volume save: 0:00:00.316514
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:49:27.286740
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
525 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:25.377458
INFO:teigen.tgmain:time before volume generate: 0:00:00.023160
INFO:teigen.tgmain:time before volume save: 0:00:00.023160
INFO:teigen.tgmain:time after volume save: 0:00:00.047517
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:49:54.371226
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
526 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:25.840674
INFO:teigen.tgmain:time before volume generate: 0:00:00.039315
INFO:teigen.tgmain:time before volume save: 0:00:00.039315
INFO:teigen.tgmain:time after volume save: 0:00:00.074070
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:50:21.989488
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
527 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.203429
INFO:teigen.tgmain:time before volume generate: 0:00:00.029489
INFO:teigen.tgmain:time before volume save: 0:00:00.029489
INFO:teigen.tgmain:time after volume save: 0:00:00.086462
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:50:50.090791
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
528 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:25.899785
INFO:teigen.tgmain:time before volume generate: 0:00:00.023982
INFO:teigen.tgmain:time before volume save: 0:00:00.023982
INFO:teigen.tgmain:time after volume save: 0:00:00.054161
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:51:17.745310
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
529 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:25.896005
INFO:teigen.tgmain:time before volume generate: 0:00:00.023365
INFO:teigen.tgmain:time before volume save: 0:00:00.023365
INFO:teigen.tgmain:time after volume save: 0:00:00.053719
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:51:45.363607
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
530 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:30.873765
INFO:teigen.tgmain:time before volume generate: 0:00:00.023515
INFO:teigen.tgmain:time before volume save: 0:00:00.023515
INFO:teigen.tgmain:time after volume save: 0:00:00.069591
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:52:17.993978
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
531 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:30.399336
INFO:teigen.tgmain:time before volume generate: 0:00:00.023631
INFO:teigen.tgmain:time before volume save: 0:00:00.023631
INFO:teigen.tgmain:time after volume save: 0:00:00.069768
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:52:50.171189
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
532 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:32.395646
INFO:teigen.tgmain:time before volume generate: 0:00:00.023282
INFO:teigen.tgmain:time before volume save: 0:00:00.023282
INFO:teigen.tgmain:time after volume save: 0:00:00.087145
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:53:24.330598
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
533 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:31.610616
INFO:teigen.tgmain:time before volume generate: 0:00:00.023087
INFO:teigen.tgmain:time before volume save: 0:00:00.023087
INFO:teigen.tgmain:time after volume save: 0:00:00.084588
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:53:57.687474
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
534 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:31.914263
INFO:teigen.tgmain:time before volume generate: 0:00:00.023407
INFO:teigen.tgmain:time before volume save: 0:00:00.023407
INFO:teigen.tgmain:time after volume save: 0:00:00.085156
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:54:31.419020
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
535 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:00:38.695913
INFO:teigen.tgmain:time before volume generate: 0:00:00.023624
INFO:teigen.tgmain:time before volume save: 0:00:00.023624
INFO:teigen.tgmain:time after volume save: 0:00:00.106721
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:55:11.935113
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
536 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:37.875564
INFO:teigen.tgmain:time before volume generate: 0:00:00.023930
INFO:teigen.tgmain:time before volume save: 0:00:00.023930
INFO:teigen.tgmain:time after volume save: 0:00:00.107441
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:55:51.641097
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
537 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:43.445467
INFO:teigen.tgmain:time before volume generate: 0:00:00.024458
INFO:teigen.tgmain:time before volume save: 0:00:00.024458
INFO:teigen.tgmain:time after volume save: 0:00:00.135319
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:56:36.918309
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
538 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:41.816440
INFO:teigen.tgmain:time before volume generate: 0:00:00.023738
INFO:teigen.tgmain:time before volume save: 0:00:00.023738
INFO:teigen.tgmain:time after volume save: 0:00:00.134018
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:57:20.571571
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
539 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:41.678692
INFO:teigen.tgmain:time before volume generate: 0:00:00.023479
INFO:teigen.tgmain:time before volume save: 0:00:00.023479
INFO:teigen.tgmain:time after volume save: 0:00:00.133407
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:58:04.068673
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
540 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
INFO:teigen.tgmain:time: 0:00:50.755805
INFO:teigen.tgmain:time before volume generate: 0:00:00.023662
INFO:teigen.tgmain:time before volume save: 0:00:00.023662
INFO:teigen.tgmain:time after volume save: 0:00:00.165361
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:58:56.680089
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
541 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:50.125331
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.034751
INFO:teigen.tgmain:time before volume save: 0:00:00.034751
INFO:teigen.tgmain:time after volume save: 0:00:00.185405
INFO:teigen.tgmain:step1_init_datetime2017-10-13 00:59:48.905551
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
542 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:01.024775
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.036499
INFO:teigen.tgmain:time before volume save: 0:00:00.036499
INFO:teigen.tgmain:time after volume save: 0:00:00.227823
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:00:51.885509
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
543 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:56.493294
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.039961
INFO:teigen.tgmain:time before volume save: 0:00:00.039961
INFO:teigen.tgmain:time after volume save: 0:00:00.236493
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:01:50.402966
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
544 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:57.128423
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023275
INFO:teigen.tgmain:time before volume save: 0:00:00.023275
INFO:teigen.tgmain:time after volume save: 0:00:00.191970
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:02:49.490224
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
545 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:01:09.373364
generate vtk finished
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023781
INFO:teigen.tgmain:time before volume save: 0:00:00.023781
INFO:teigen.tgmain:time after volume save: 0:00:00.314343
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:04:00.973809
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
546 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:09.344967
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.025261
INFO:teigen.tgmain:time before volume save: 0:00:00.025261
INFO:teigen.tgmain:time after volume save: 0:00:00.228919
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:05:12.291053
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
547 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:53.309749
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023969
INFO:teigen.tgmain:time before volume save: 0:00:00.023969
INFO:teigen.tgmain:time after volume save: 0:00:00.277766
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:07:07.652168
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
548 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
INFO:teigen.tgmain:time: 0:01:44.682063
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024818
INFO:teigen.tgmain:time before volume save: 0:00:00.024818
INFO:teigen.tgmain:time after volume save: 0:00:00.271099
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:08:54.348059
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
549 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:43.978294
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.026639
INFO:teigen.tgmain:time before volume save: 0:00:00.026639
INFO:teigen.tgmain:time after volume save: 0:00:00.270301
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:10:40.334848
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
550 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:04.963843
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024843
INFO:teigen.tgmain:time before volume save: 0:00:00.024843
INFO:teigen.tgmain:time after volume save: 0:00:00.325148
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:12:47.507046
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
551 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:04.347788
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024777
INFO:teigen.tgmain:time before volume save: 0:00:00.024777
INFO:teigen.tgmain:time after volume save: 0:00:00.307398
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:14:53.886948
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
552 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:36.583354
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023615
INFO:teigen.tgmain:time before volume save: 0:00:00.023615
INFO:teigen.tgmain:time after volume save: 0:00:00.360542
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:17:32.648317
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
553 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:22.616842
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023771
INFO:teigen.tgmain:time before volume save: 0:00:00.023771
INFO:teigen.tgmain:time after volume save: 0:00:00.360978
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:19:57.446804
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
554 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:21.994709
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023289
INFO:teigen.tgmain:time before volume save: 0:00:00.023289
INFO:teigen.tgmain:time after volume save: 0:00:00.353927
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:22:21.559146
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
555 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:47.552280
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023335
INFO:teigen.tgmain:time before volume save: 0:00:00.023335
INFO:teigen.tgmain:time after volume save: 0:00:00.406887
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:25:11.306642
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
556 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:02:48.287458
generate vtk finished
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.041639
INFO:teigen.tgmain:time before volume save: 0:00:00.041639
INFO:teigen.tgmain:time after volume save: 0:00:00.450772
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:28:01.832224
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
557 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:35.283429
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023742
INFO:teigen.tgmain:time before volume save: 0:00:00.023742
INFO:teigen.tgmain:time after volume save: 0:00:00.486898
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:31:39.471152
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
558 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:11.023685
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024083
INFO:teigen.tgmain:time before volume save: 0:00:00.024083
INFO:teigen.tgmain:time after volume save: 0:00:00.473658
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:34:52.774061
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
559 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:03:09.295121
generate vtk finished
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024335
INFO:teigen.tgmain:time before volume save: 0:00:00.024335
INFO:teigen.tgmain:time after volume save: 0:00:00.457441
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:38:04.379776
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
560 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:00:25.252229
INFO:teigen.tgmain:time before volume generate: 0:00:00.030858
INFO:teigen.tgmain:time before volume save: 0:00:00.030858
INFO:teigen.tgmain:time after volume save: 0:00:00.061712
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:38:31.387117
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
561 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:25.672730
INFO:teigen.tgmain:time before volume generate: 0:00:00.035784
INFO:teigen.tgmain:time before volume save: 0:00:00.035784
INFO:teigen.tgmain:time after volume save: 0:00:00.067350
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:38:58.868581
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
562 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.098461
INFO:teigen.tgmain:time before volume generate: 0:00:00.023779
INFO:teigen.tgmain:time before volume save: 0:00:00.023779
INFO:teigen.tgmain:time after volume save: 0:00:00.055791
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:39:26.713541
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
563 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:25.746318
INFO:teigen.tgmain:time before volume generate: 0:00:00.023708
INFO:teigen.tgmain:time before volume save: 0:00:00.023708
INFO:teigen.tgmain:time after volume save: 0:00:00.056629
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:39:54.188133
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
564 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:25.772622
INFO:teigen.tgmain:time before volume generate: 0:00:00.023456
INFO:teigen.tgmain:time before volume save: 0:00:00.023456
INFO:teigen.tgmain:time after volume save: 0:00:00.053754
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:40:21.735731
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
565 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:30.883912
INFO:teigen.tgmain:time before volume generate: 0:00:00.047175
INFO:teigen.tgmain:time before volume save: 0:00:00.047175
INFO:teigen.tgmain:time after volume save: 0:00:00.119461
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:40:54.532334
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
566 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:29.904121
INFO:teigen.tgmain:time before volume generate: 0:00:00.023323
INFO:teigen.tgmain:time before volume save: 0:00:00.023323
INFO:teigen.tgmain:time after volume save: 0:00:00.069505
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:41:26.181150
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
567 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:32.650677
INFO:teigen.tgmain:time before volume generate: 0:00:00.023389
INFO:teigen.tgmain:time before volume save: 0:00:00.023389
INFO:teigen.tgmain:time after volume save: 0:00:00.086591
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:42:00.695075
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
568 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:32.166070
INFO:teigen.tgmain:time before volume generate: 0:00:00.023155
INFO:teigen.tgmain:time before volume save: 0:00:00.023155
INFO:teigen.tgmain:time after volume save: 0:00:00.085018
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:42:34.656335
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
569 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:32.321785
INFO:teigen.tgmain:time before volume generate: 0:00:00.023970
INFO:teigen.tgmain:time before volume save: 0:00:00.023970
INFO:teigen.tgmain:time after volume save: 0:00:00.085650
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:43:08.790595
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
570 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:37.787453
INFO:teigen.tgmain:time before volume generate: 0:00:00.023546
INFO:teigen.tgmain:time before volume save: 0:00:00.023546
INFO:teigen.tgmain:time after volume save: 0:00:00.106791
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:43:48.409062
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
571 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:00:37.884422
INFO:teigen.tgmain:time before volume generate: 0:00:00.042688
INFO:teigen.tgmain:time before volume save: 0:00:00.042688
generate vtk finished
step1 finished
INFO:teigen.tgmain:time after volume save: 0:00:00.150881
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:44:28.178361
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
572 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:43.571722
INFO:teigen.tgmain:time before volume generate: 0:00:00.023326
INFO:teigen.tgmain:time before volume save: 0:00:00.023326
INFO:teigen.tgmain:time after volume save: 0:00:00.133348
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:45:13.628942
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
573 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:42.304936
INFO:teigen.tgmain:time before volume generate: 0:00:00.023163
INFO:teigen.tgmain:time before volume save: 0:00:00.023163
INFO:teigen.tgmain:time after volume save: 0:00:00.132087
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:45:57.777833
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
574 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:41.416875
INFO:teigen.tgmain:time before volume generate: 0:00:00.023096
INFO:teigen.tgmain:time before volume save: 0:00:00.023096
INFO:teigen.tgmain:time after volume save: 0:00:00.130899
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:46:41.047245
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
575 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:00:50.752590
INFO:teigen.tgmain:time before volume generate: 0:00:00.023630
INFO:teigen.tgmain:time before volume save: 0:00:00.023630
INFO:teigen.tgmain:time after volume save: 0:00:00.159549
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:47:33.721407
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
576 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:50.220889
INFO:teigen.tgmain:time before volume generate: 0:00:00.024115
INFO:teigen.tgmain:time before volume save: 0:00:00.024115
INFO:teigen.tgmain:time after volume save: 0:00:00.162291
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:48:25.811253
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
577 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:00.905830
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.034508
INFO:teigen.tgmain:time before volume save: 0:00:00.034508
INFO:teigen.tgmain:time after volume save: 0:00:00.220850
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:49:28.766347
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
578 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:56.473369
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023320
INFO:teigen.tgmain:time before volume save: 0:00:00.023320
INFO:teigen.tgmain:time after volume save: 0:00:00.201276
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:50:27.147195
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
579 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:57.481176
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023582
INFO:teigen.tgmain:time before volume save: 0:00:00.023582
INFO:teigen.tgmain:time after volume save: 0:00:00.190149
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:51:26.540846
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
580 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:09.309864
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024556
INFO:teigen.tgmain:time before volume save: 0:00:00.024556
INFO:teigen.tgmain:time after volume save: 0:00:00.226769
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:52:37.815655
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
581 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:01:09.190745
generate vtk finished
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.043491
INFO:teigen.tgmain:time before volume save: 0:00:00.043491
INFO:teigen.tgmain:time after volume save: 0:00:00.279051
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:53:49.043222
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
582 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:01:52.624105
generate vtk finished
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024490
INFO:teigen.tgmain:time before volume save: 0:00:00.024490
INFO:teigen.tgmain:time after volume save: 0:00:00.274085
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:55:43.694733
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
583 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:44.938682
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023751
INFO:teigen.tgmain:time before volume save: 0:00:00.023751
INFO:teigen.tgmain:time after volume save: 0:00:00.268830
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:57:30.662828
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
584 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:43.468259
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023917
INFO:teigen.tgmain:time before volume save: 0:00:00.023917
INFO:teigen.tgmain:time after volume save: 0:00:00.291915
INFO:teigen.tgmain:step1_init_datetime2017-10-13 01:59:16.282334
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
585 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:04.850276
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023213
INFO:teigen.tgmain:time before volume save: 0:00:00.023213
INFO:teigen.tgmain:time after volume save: 0:00:00.312804
INFO:teigen.tgmain:step1_init_datetime2017-10-13 02:01:23.188052
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
586 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:04.887423
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023449
INFO:teigen.tgmain:time before volume save: 0:00:00.023449
INFO:teigen.tgmain:time after volume save: 0:00:00.310064
INFO:teigen.tgmain:step1_init_datetime2017-10-13 02:03:30.205636
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
587 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:36.983009
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023298
INFO:teigen.tgmain:time before volume save: 0:00:00.023298
INFO:teigen.tgmain:time after volume save: 0:00:00.365552
INFO:teigen.tgmain:step1_init_datetime2017-10-13 02:06:09.399959
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
588 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:22.954139
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023301
INFO:teigen.tgmain:time before volume save: 0:00:00.023301
INFO:teigen.tgmain:time after volume save: 0:00:00.360344
INFO:teigen.tgmain:step1_init_datetime2017-10-13 02:08:34.457755
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
589 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:21.377238
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023230
INFO:teigen.tgmain:time before volume save: 0:00:00.023230
INFO:teigen.tgmain:time after volume save: 0:00:00.353762
INFO:teigen.tgmain:step1_init_datetime2017-10-13 02:10:57.944429
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
590 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:48.430979
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023201
INFO:teigen.tgmain:time before volume save: 0:00:00.023201
INFO:teigen.tgmain:time after volume save: 0:00:00.400271
INFO:teigen.tgmain:step1_init_datetime2017-10-13 02:13:48.561898
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
591 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:48.197178
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023632
INFO:teigen.tgmain:time before volume save: 0:00:00.023632
INFO:teigen.tgmain:time after volume save: 0:00:00.403332
INFO:teigen.tgmain:step1_init_datetime2017-10-13 02:16:39.014171
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
592 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:34.622052
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.040413
INFO:teigen.tgmain:time before volume save: 0:00:00.040413
INFO:teigen.tgmain:time after volume save: 0:00:00.514983
INFO:teigen.tgmain:step1_init_datetime2017-10-13 02:20:16.037974
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
593 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:11.629159
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024087
INFO:teigen.tgmain:time before volume save: 0:00:00.024087
INFO:teigen.tgmain:time after volume save: 0:00:00.473023
INFO:teigen.tgmain:step1_init_datetime2017-10-13 02:23:29.947883
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
594 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:09.087183
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024622
INFO:teigen.tgmain:time before volume save: 0:00:00.024622
INFO:teigen.tgmain:time after volume save: 0:00:00.475046
INFO:teigen.tgmain:step1_init_datetime2017-10-13 02:26:41.334854
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
595 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
INFO:teigen.tgmain:time: 0:00:25.855581
INFO:teigen.tgmain:time before volume generate: 0:00:00.040951
INFO:teigen.tgmain:time before volume save: 0:00:00.040951
INFO:teigen.tgmain:time after volume save: 0:00:00.078361
progess: 0.933333333333
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 02:27:09.001077
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
596 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:25.043250
INFO:teigen.tgmain:time before volume generate: 0:00:00.023135
INFO:teigen.tgmain:time before volume save: 0:00:00.023135
INFO:teigen.tgmain:time after volume save: 0:00:00.046606
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 02:27:35.848675
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
597 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.381326
INFO:teigen.tgmain:time before volume generate: 0:00:00.023197
INFO:teigen.tgmain:time before volume save: 0:00:00.023197
INFO:teigen.tgmain:time after volume save: 0:00:00.055023
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 02:28:03.990606
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
598 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:25.884173
INFO:teigen.tgmain:time before volume generate: 0:00:00.023601
INFO:teigen.tgmain:time before volume save: 0:00:00.023601
INFO:teigen.tgmain:time after volume save: 0:00:00.054056
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 02:28:31.599352
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
599 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:25.784011
INFO:teigen.tgmain:time before volume generate: 0:00:00.023538
INFO:teigen.tgmain:time before volume save: 0:00:00.023538
INFO:teigen.tgmain:time after volume save: 0:00:00.053885
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 02:28:59.109010
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
600 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:29.916114
INFO:teigen.tgmain:time before volume generate: 0:00:00.051573
INFO:teigen.tgmain:time before volume save: 0:00:00.051573
INFO:teigen.tgmain:time after volume save: 0:00:00.125068
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 02:29:30.925774
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
601 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:29.887786
INFO:teigen.tgmain:time before volume generate: 0:00:00.023227
INFO:teigen.tgmain:time before volume save: 0:00:00.023227
INFO:teigen.tgmain:time after volume save: 0:00:00.069504
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 02:30:02.565452
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
602 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:32.536657
INFO:teigen.tgmain:time before volume generate: 0:00:00.024243
INFO:teigen.tgmain:time before volume save: 0:00:00.024243
INFO:teigen.tgmain:time after volume save: 0:00:00.088088
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 02:30:36.908209
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
603 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:32.235021
INFO:teigen.tgmain:time before volume generate: 0:00:00.024540
INFO:teigen.tgmain:time before volume save: 0:00:00.024540
INFO:teigen.tgmain:time after volume save: 0:00:00.086492
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 02:31:10.945123
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
604 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:32.268524
INFO:teigen.tgmain:time before volume generate: 0:00:00.023359
INFO:teigen.tgmain:time before volume save: 0:00:00.023359
INFO:teigen.tgmain:time after volume save: 0:00:00.084892
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 02:31:45.002581
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
605 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:38.275858
INFO:teigen.tgmain:time before volume generate: 0:00:00.030856
INFO:teigen.tgmain:time before volume save: 0:00:00.030856
INFO:teigen.tgmain:time after volume save: 0:00:00.122719
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 02:32:25.203805
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
606 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
INFO:teigen.tgmain:time: 0:00:38.104142
INFO:teigen.tgmain:time before volume generate: 0:00:00.023613
INFO:teigen.tgmain:time before volume save: 0:00:00.023613
INFO:teigen.tgmain:time after volume save: 0:00:00.115029
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 02:33:05.213806
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
607 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:43.352607
INFO:teigen.tgmain:time before volume generate: 0:00:00.023264
INFO:teigen.tgmain:time before volume save: 0:00:00.023264
INFO:teigen.tgmain:time after volume save: 0:00:00.133534
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 02:33:50.543888
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
608 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:41.562166
INFO:teigen.tgmain:time before volume generate: 0:00:00.023523
INFO:teigen.tgmain:time before volume save: 0:00:00.023523
INFO:teigen.tgmain:time after volume save: 0:00:00.133876
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 02:34:33.977607
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
609 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:41.764105
INFO:teigen.tgmain:time before volume generate: 0:00:00.023237
INFO:teigen.tgmain:time before volume save: 0:00:00.023237
INFO:teigen.tgmain:time after volume save: 0:00:00.130932
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 02:35:17.576910
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
610 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:50.086890
INFO:teigen.tgmain:time before volume generate: 0:00:00.023763
INFO:teigen.tgmain:time before volume save: 0:00:00.023763
INFO:teigen.tgmain:time after volume save: 0:00:00.160002
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 02:36:09.541482
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
611 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:50.872638
INFO:teigen.tgmain:time before volume generate: 0:00:00.023395
INFO:teigen.tgmain:time before volume save: 0:00:00.023395
INFO:teigen.tgmain:time after volume save: 0:00:00.157919
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 02:37:02.337240
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
612 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:01:00.290478
generate vtk finished
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024181
INFO:teigen.tgmain:time before volume save: 0:00:00.024181
INFO:teigen.tgmain:time after volume save: 0:00:00.194637
INFO:teigen.tgmain:step1_init_datetime2017-10-13 02:38:04.652263
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
613 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:56.732588
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024062
INFO:teigen.tgmain:time before volume save: 0:00:00.024062
INFO:teigen.tgmain:time after volume save: 0:00:00.195603
INFO:teigen.tgmain:step1_init_datetime2017-10-13 02:39:03.301549
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
614 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:56.384473
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024726
INFO:teigen.tgmain:time before volume save: 0:00:00.024726
INFO:teigen.tgmain:time after volume save: 0:00:00.191680
INFO:teigen.tgmain:step1_init_datetime2017-10-13 02:40:01.590843
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
615 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:09.063109
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023574
INFO:teigen.tgmain:time before volume save: 0:00:00.023574
INFO:teigen.tgmain:time after volume save: 0:00:00.224472
INFO:teigen.tgmain:step1_init_datetime2017-10-13 02:41:12.615520
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
616 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:09.690293
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023016
INFO:teigen.tgmain:time before volume save: 0:00:00.023016
INFO:teigen.tgmain:time after volume save: 0:00:00.228755
INFO:teigen.tgmain:step1_init_datetime2017-10-13 02:42:24.257832
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
617 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:52.777224
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023710
INFO:teigen.tgmain:time before volume save: 0:00:00.023710
INFO:teigen.tgmain:time after volume save: 0:00:00.271396
INFO:teigen.tgmain:step1_init_datetime2017-10-13 02:44:19.052944
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
618 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:44.343109
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023464
INFO:teigen.tgmain:time before volume save: 0:00:00.023464
INFO:teigen.tgmain:time after volume save: 0:00:00.268052
INFO:teigen.tgmain:step1_init_datetime2017-10-13 02:46:05.421982
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
619 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:44.056772
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024277
INFO:teigen.tgmain:time before volume save: 0:00:00.024277
INFO:teigen.tgmain:time after volume save: 0:00:00.277070
INFO:teigen.tgmain:step1_init_datetime2017-10-13 02:47:51.547121
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
620 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:05.002587
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023224
INFO:teigen.tgmain:time before volume save: 0:00:00.023224
INFO:teigen.tgmain:time after volume save: 0:00:00.306059
INFO:teigen.tgmain:step1_init_datetime2017-10-13 02:49:58.625069
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
621 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:04.680165
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.025908
INFO:teigen.tgmain:time before volume save: 0:00:00.025908
INFO:teigen.tgmain:time after volume save: 0:00:00.358069
INFO:teigen.tgmain:step1_init_datetime2017-10-13 02:52:05.645142
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
622 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:36.778601
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023066
INFO:teigen.tgmain:time before volume save: 0:00:00.023066
INFO:teigen.tgmain:time after volume save: 0:00:00.360447
INFO:teigen.tgmain:step1_init_datetime2017-10-13 02:54:44.727415
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
623 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:23.782474
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023997
INFO:teigen.tgmain:time before volume save: 0:00:00.023997
INFO:teigen.tgmain:time after volume save: 0:00:00.360136
INFO:teigen.tgmain:step1_init_datetime2017-10-13 02:57:10.643053
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
624 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:20.938978
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023269
INFO:teigen.tgmain:time before volume save: 0:00:00.023269
INFO:teigen.tgmain:time after volume save: 0:00:00.352415
INFO:teigen.tgmain:step1_init_datetime2017-10-13 02:59:33.744495
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
625 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:48.294948
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023522
INFO:teigen.tgmain:time before volume save: 0:00:00.023522
INFO:teigen.tgmain:time after volume save: 0:00:00.405703
INFO:teigen.tgmain:step1_init_datetime2017-10-13 03:02:24.256521
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
626 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:47.355430
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023764
INFO:teigen.tgmain:time before volume save: 0:00:00.023764
INFO:teigen.tgmain:time after volume save: 0:00:00.402144
INFO:teigen.tgmain:step1_init_datetime2017-10-13 03:05:13.801105
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
627 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:03:34.102759
generate vtk finished
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023731
INFO:teigen.tgmain:time before volume save: 0:00:00.023731
INFO:teigen.tgmain:time after volume save: 0:00:00.476236
INFO:teigen.tgmain:step1_init_datetime2017-10-13 03:08:50.166384
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
628 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:11.095302
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023315
INFO:teigen.tgmain:time before volume save: 0:00:00.023315
INFO:teigen.tgmain:time after volume save: 0:00:00.566838
INFO:teigen.tgmain:step1_init_datetime2017-10-13 03:12:03.896710
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
629 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:09.229782
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023147
INFO:teigen.tgmain:time before volume save: 0:00:00.023147
INFO:teigen.tgmain:time after volume save: 0:00:00.461738
INFO:teigen.tgmain:step1_init_datetime2017-10-13 03:15:15.419143
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
630 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:25.328363
INFO:teigen.tgmain:time before volume generate: 0:00:00.023238
INFO:teigen.tgmain:time before volume save: 0:00:00.023238
INFO:teigen.tgmain:time after volume save: 0:00:00.047736
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 03:15:42.521364
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
631 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
INFO:teigen.tgmain:time: 0:00:25.139705
INFO:teigen.tgmain:time before volume generate: 0:00:00.041974
INFO:teigen.tgmain:time before volume save: 0:00:00.041974
INFO:teigen.tgmain:time after volume save: 0:00:00.077634
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 03:16:09.545965
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
632 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:25.890079
INFO:teigen.tgmain:time before volume generate: 0:00:00.023020
INFO:teigen.tgmain:time before volume save: 0:00:00.023020
INFO:teigen.tgmain:time after volume save: 0:00:00.054749
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 03:16:37.199696
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
633 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:27.329254
INFO:teigen.tgmain:time before volume generate: 0:00:00.023308
INFO:teigen.tgmain:time before volume save: 0:00:00.023308
INFO:teigen.tgmain:time after volume save: 0:00:00.053697
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 03:17:06.307543
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
634 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:25.640011
INFO:teigen.tgmain:time before volume generate: 0:00:00.023433
INFO:teigen.tgmain:time before volume save: 0:00:00.023433
INFO:teigen.tgmain:time after volume save: 0:00:00.053634
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 03:17:33.669936
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
635 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
INFO:teigen.tgmain:time: 0:00:29.984651
INFO:teigen.tgmain:time before volume generate: 0:00:00.023388
INFO:teigen.tgmain:time before volume save: 0:00:00.023388
INFO:teigen.tgmain:time after volume save: 0:00:00.075402
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 03:18:05.424192
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
636 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:30.005014
INFO:teigen.tgmain:time before volume generate: 0:00:00.039470
INFO:teigen.tgmain:time before volume save: 0:00:00.039470
INFO:teigen.tgmain:time after volume save: 0:00:00.103171
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 03:18:37.338230
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
637 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:32.970578
INFO:teigen.tgmain:time before volume generate: 0:00:00.023713
INFO:teigen.tgmain:time before volume save: 0:00:00.023713
INFO:teigen.tgmain:time after volume save: 0:00:00.090865
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 03:19:12.171835
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
638 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:31.924383
INFO:teigen.tgmain:time before volume generate: 0:00:00.023603
INFO:teigen.tgmain:time before volume save: 0:00:00.023603
INFO:teigen.tgmain:time after volume save: 0:00:00.085672
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 03:19:45.926642
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
639 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:32.090355
INFO:teigen.tgmain:time before volume generate: 0:00:00.023298
INFO:teigen.tgmain:time before volume save: 0:00:00.023298
INFO:teigen.tgmain:time after volume save: 0:00:00.085097
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 03:20:19.821220
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
640 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:38.127778
INFO:teigen.tgmain:time before volume generate: 0:00:00.023187
INFO:teigen.tgmain:time before volume save: 0:00:00.023187
INFO:teigen.tgmain:time after volume save: 0:00:00.106447
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 03:20:59.845445
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
641 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
INFO:teigen.tgmain:time: 0:00:37.654299
INFO:teigen.tgmain:time before volume generate: 0:00:00.023353
INFO:teigen.tgmain:time before volume save: 0:00:00.023353
INFO:teigen.tgmain:time after volume save: 0:00:00.106889
progess: 0.933333333333
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 03:21:39.316831
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
642 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:44.290267
INFO:teigen.tgmain:time before volume generate: 0:00:00.023287
INFO:teigen.tgmain:time before volume save: 0:00:00.023287
INFO:teigen.tgmain:time after volume save: 0:00:00.134360
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 03:22:25.503750
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
643 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:42.001888
INFO:teigen.tgmain:time before volume generate: 0:00:00.023444
INFO:teigen.tgmain:time before volume save: 0:00:00.023444
INFO:teigen.tgmain:time after volume save: 0:00:00.132143
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 03:23:09.388972
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
644 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:41.665108
INFO:teigen.tgmain:time before volume generate: 0:00:00.023422
INFO:teigen.tgmain:time before volume save: 0:00:00.023422
INFO:teigen.tgmain:time after volume save: 0:00:00.130803
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 03:23:52.891985
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
645 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:50.213619
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.048137
INFO:teigen.tgmain:time before volume save: 0:00:00.048137
INFO:teigen.tgmain:time after volume save: 0:00:00.270633
INFO:teigen.tgmain:step1_init_datetime2017-10-13 03:24:45.566547
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
646 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:50.511233
INFO:teigen.tgmain:time before volume generate: 0:00:00.023732
INFO:teigen.tgmain:time before volume save: 0:00:00.023732
INFO:teigen.tgmain:time after volume save: 0:00:00.158527
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 03:25:37.954438
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
647 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:00.188922
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023155
INFO:teigen.tgmain:time before volume save: 0:00:00.023155
INFO:teigen.tgmain:time after volume save: 0:00:00.196220
INFO:teigen.tgmain:step1_init_datetime2017-10-13 03:26:40.089900
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
648 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:57.253922
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024002
INFO:teigen.tgmain:time before volume save: 0:00:00.024002
INFO:teigen.tgmain:time after volume save: 0:00:00.194863
INFO:teigen.tgmain:step1_init_datetime2017-10-13 03:27:39.271675
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
649 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:00:56.528088
generate vtk finished
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.036736
INFO:teigen.tgmain:time before volume save: 0:00:00.036736
INFO:teigen.tgmain:time after volume save: 0:00:00.223281
INFO:teigen.tgmain:step1_init_datetime2017-10-13 03:28:37.962509
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
650 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:09.108270
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.025745
INFO:teigen.tgmain:time before volume save: 0:00:00.025745
INFO:teigen.tgmain:time after volume save: 0:00:00.228904
INFO:teigen.tgmain:step1_init_datetime2017-10-13 03:29:49.066940
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
651 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:09.465638
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023351
INFO:teigen.tgmain:time before volume save: 0:00:00.023351
INFO:teigen.tgmain:time after volume save: 0:00:00.223881
INFO:teigen.tgmain:step1_init_datetime2017-10-13 03:31:00.497983
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
652 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:53.615074
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023833
INFO:teigen.tgmain:time before volume save: 0:00:00.023833
INFO:teigen.tgmain:time after volume save: 0:00:00.282561
INFO:teigen.tgmain:step1_init_datetime2017-10-13 03:32:56.121220
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
653 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:01:44.273687
generate vtk finished
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024010
INFO:teigen.tgmain:time before volume save: 0:00:00.024010
INFO:teigen.tgmain:time after volume save: 0:00:00.269838
INFO:teigen.tgmain:step1_init_datetime2017-10-13 03:34:42.429072
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
654 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:44.013091
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023780
INFO:teigen.tgmain:time before volume save: 0:00:00.023780
INFO:teigen.tgmain:time after volume save: 0:00:00.266274
INFO:teigen.tgmain:step1_init_datetime2017-10-13 03:36:28.443755
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
655 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:05.151291
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.026278
INFO:teigen.tgmain:time before volume save: 0:00:00.026278
INFO:teigen.tgmain:time after volume save: 0:00:00.313212
INFO:teigen.tgmain:step1_init_datetime2017-10-13 03:38:35.772151
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
656 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:04.055907
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.028921
INFO:teigen.tgmain:time before volume save: 0:00:00.028921
INFO:teigen.tgmain:time after volume save: 0:00:00.316016
INFO:teigen.tgmain:step1_init_datetime2017-10-13 03:40:42.154543
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
657 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:37.785138
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023611
INFO:teigen.tgmain:time before volume save: 0:00:00.023611
INFO:teigen.tgmain:time after volume save: 0:00:00.365277
INFO:teigen.tgmain:step1_init_datetime2017-10-13 03:43:22.114841
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
658 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:22.547631
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023666
INFO:teigen.tgmain:time before volume save: 0:00:00.023666
INFO:teigen.tgmain:time after volume save: 0:00:00.359295
INFO:teigen.tgmain:step1_init_datetime2017-10-13 03:45:46.878195
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
659 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:21.426726
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.031068
INFO:teigen.tgmain:time before volume save: 0:00:00.031068
INFO:teigen.tgmain:time after volume save: 0:00:00.367984
INFO:teigen.tgmain:step1_init_datetime2017-10-13 03:48:10.476817
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
660 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:47.657678
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023401
INFO:teigen.tgmain:time before volume save: 0:00:00.023401
INFO:teigen.tgmain:time after volume save: 0:00:00.406764
INFO:teigen.tgmain:step1_init_datetime2017-10-13 03:51:00.356929
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
661 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:48.487246
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024893
INFO:teigen.tgmain:time before volume save: 0:00:00.024893
INFO:teigen.tgmain:time after volume save: 0:00:00.408230
INFO:teigen.tgmain:step1_init_datetime2017-10-13 03:53:51.141909
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
662 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:34.390831
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023012
INFO:teigen.tgmain:time before volume save: 0:00:00.023012
INFO:teigen.tgmain:time after volume save: 0:00:00.465893
INFO:teigen.tgmain:step1_init_datetime2017-10-13 03:57:27.817047
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
663 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:03:11.636849
generate vtk finished
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.035277
INFO:teigen.tgmain:time before volume save: 0:00:00.035277
INFO:teigen.tgmain:time after volume save: 0:00:00.496938
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:00:41.773960
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
664 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:10.132333
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023253
INFO:teigen.tgmain:time before volume save: 0:00:00.023253
INFO:teigen.tgmain:time after volume save: 0:00:00.459773
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:03:54.160547
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
665 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:25.314576
INFO:teigen.tgmain:time before volume generate: 0:00:00.024722
INFO:teigen.tgmain:time before volume save: 0:00:00.024722
INFO:teigen.tgmain:time after volume save: 0:00:00.049770
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:04:21.293302
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
666 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:25.755525
INFO:teigen.tgmain:time before volume generate: 0:00:00.027567
INFO:teigen.tgmain:time before volume save: 0:00:00.027567
INFO:teigen.tgmain:time after volume save: 0:00:00.052335
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:04:48.896075
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
667 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.202475
INFO:teigen.tgmain:time before volume generate: 0:00:00.023409
INFO:teigen.tgmain:time before volume save: 0:00:00.023409
INFO:teigen.tgmain:time after volume save: 0:00:00.055610
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:05:16.862245
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
668 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:25.972425
INFO:teigen.tgmain:time before volume generate: 0:00:00.023560
INFO:teigen.tgmain:time before volume save: 0:00:00.023560
INFO:teigen.tgmain:time after volume save: 0:00:00.053610
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:05:44.600133
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
669 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:25.762066
INFO:teigen.tgmain:time before volume generate: 0:00:00.023685
INFO:teigen.tgmain:time before volume save: 0:00:00.023685
INFO:teigen.tgmain:time after volume save: 0:00:00.054037
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:06:12.113149
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
670 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:00:30.258140
INFO:teigen.tgmain:time before volume generate: 0:00:00.024038
INFO:teigen.tgmain:time before volume save: 0:00:00.024038
INFO:teigen.tgmain:time after volume save: 0:00:00.070875
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:06:44.177350
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
671 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:30.437836
INFO:teigen.tgmain:time before volume generate: 0:00:00.042042
INFO:teigen.tgmain:time before volume save: 0:00:00.042042
INFO:teigen.tgmain:time after volume save: 0:00:00.106371
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:07:16.501188
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
672 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:32.977767
INFO:teigen.tgmain:time before volume generate: 0:00:00.023569
INFO:teigen.tgmain:time before volume save: 0:00:00.023569
INFO:teigen.tgmain:time after volume save: 0:00:00.086782
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:07:51.350848
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
673 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:00:31.670664
INFO:teigen.tgmain:time before volume generate: 0:00:00.024429
INFO:teigen.tgmain:time before volume save: 0:00:00.024429
INFO:teigen.tgmain:time after volume save: 0:00:00.087908
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:08:24.891499
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
674 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:32.415440
INFO:teigen.tgmain:time before volume generate: 0:00:00.024010
INFO:teigen.tgmain:time before volume save: 0:00:00.024010
INFO:teigen.tgmain:time after volume save: 0:00:00.087993
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:08:59.133909
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
675 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:37.876660
INFO:teigen.tgmain:time before volume generate: 0:00:00.036752
INFO:teigen.tgmain:time before volume save: 0:00:00.036752
INFO:teigen.tgmain:time after volume save: 0:00:00.139470
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:09:38.991802
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
676 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:38.234821
INFO:teigen.tgmain:time before volume generate: 0:00:00.023315
INFO:teigen.tgmain:time before volume save: 0:00:00.023315
INFO:teigen.tgmain:time after volume save: 0:00:00.106472
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:10:19.038544
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
677 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:44.018609
INFO:teigen.tgmain:time before volume generate: 0:00:00.023438
INFO:teigen.tgmain:time before volume save: 0:00:00.023438
INFO:teigen.tgmain:time after volume save: 0:00:00.133685
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:11:04.944297
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
678 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
INFO:teigen.tgmain:time: 0:00:41.519202
INFO:teigen.tgmain:time before volume generate: 0:00:00.032492
INFO:teigen.tgmain:time before volume save: 0:00:00.032492
INFO:teigen.tgmain:time after volume save: 0:00:00.152819
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:11:48.484844
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
679 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:42.620586
INFO:teigen.tgmain:time before volume generate: 0:00:00.023431
INFO:teigen.tgmain:time before volume save: 0:00:00.023431
INFO:teigen.tgmain:time after volume save: 0:00:00.130455
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:12:33.003813
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
680 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:51.235300
INFO:teigen.tgmain:time before volume generate: 0:00:00.023748
INFO:teigen.tgmain:time before volume save: 0:00:00.023748
INFO:teigen.tgmain:time after volume save: 0:00:00.168247
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:13:26.184454
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
681 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:50.107298
INFO:teigen.tgmain:time before volume generate: 0:00:00.023856
INFO:teigen.tgmain:time before volume save: 0:00:00.023856
INFO:teigen.tgmain:time after volume save: 0:00:00.164103
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:14:18.210742
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
682 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:00.700921
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.039180
INFO:teigen.tgmain:time before volume save: 0:00:00.039180
INFO:teigen.tgmain:time after volume save: 0:00:00.236070
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:15:20.943677
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
683 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:00:56.693203
generate vtk finished
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.025817
INFO:teigen.tgmain:time before volume save: 0:00:00.025817
INFO:teigen.tgmain:time after volume save: 0:00:00.197552
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:16:19.617383
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
684 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:56.964766
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024007
INFO:teigen.tgmain:time before volume save: 0:00:00.024007
INFO:teigen.tgmain:time after volume save: 0:00:00.191074
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:17:18.573727
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
685 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:09.426176
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024457
INFO:teigen.tgmain:time before volume save: 0:00:00.024457
INFO:teigen.tgmain:time after volume save: 0:00:00.227317
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:18:30.044951
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
686 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:09.605836
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024102
INFO:teigen.tgmain:time before volume save: 0:00:00.024102
INFO:teigen.tgmain:time after volume save: 0:00:00.229942
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:19:41.684150
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
687 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:52.706575
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023215
INFO:teigen.tgmain:time before volume save: 0:00:00.023215
INFO:teigen.tgmain:time after volume save: 0:00:00.274418
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:21:36.456662
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
688 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:45.257386
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.033551
INFO:teigen.tgmain:time before volume save: 0:00:00.033551
INFO:teigen.tgmain:time after volume save: 0:00:00.293101
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:23:23.788638
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
689 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:43.553201
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024043
INFO:teigen.tgmain:time before volume save: 0:00:00.024043
INFO:teigen.tgmain:time after volume save: 0:00:00.267368
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:25:09.457985
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
690 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:04.647707
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023541
INFO:teigen.tgmain:time before volume save: 0:00:00.023541
INFO:teigen.tgmain:time after volume save: 0:00:00.313017
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:27:16.276948
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
691 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:05.031888
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.027882
INFO:teigen.tgmain:time before volume save: 0:00:00.027882
INFO:teigen.tgmain:time after volume save: 0:00:00.312213
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:29:23.412812
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
692 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:37.602051
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023524
INFO:teigen.tgmain:time before volume save: 0:00:00.023524
INFO:teigen.tgmain:time after volume save: 0:00:00.363285
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:32:03.221566
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
693 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:23.329036
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023430
INFO:teigen.tgmain:time before volume save: 0:00:00.023430
INFO:teigen.tgmain:time after volume save: 0:00:00.358769
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:34:28.901204
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
694 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:21.789036
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.046101
INFO:teigen.tgmain:time before volume save: 0:00:00.046101
INFO:teigen.tgmain:time after volume save: 0:00:00.414139
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:36:52.923668
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
695 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:48.059516
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023465
INFO:teigen.tgmain:time before volume save: 0:00:00.023465
INFO:teigen.tgmain:time after volume save: 0:00:00.410102
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:39:43.180583
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
696 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:48.800747
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024391
INFO:teigen.tgmain:time before volume save: 0:00:00.024391
INFO:teigen.tgmain:time after volume save: 0:00:00.405011
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:42:34.256803
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
697 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:34.867880
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023500
INFO:teigen.tgmain:time before volume save: 0:00:00.023500
INFO:teigen.tgmain:time after volume save: 0:00:00.481809
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:46:11.430645
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
698 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:11.761549
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023719
INFO:teigen.tgmain:time before volume save: 0:00:00.023719
INFO:teigen.tgmain:time after volume save: 0:00:00.474799
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:49:25.448998
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
699 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:09.216098
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023665
INFO:teigen.tgmain:time before volume save: 0:00:00.023665
INFO:teigen.tgmain:time after volume save: 0:00:00.459342
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:52:36.953608
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
700 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:25.783590
INFO:teigen.tgmain:time before volume generate: 0:00:00.023632
INFO:teigen.tgmain:time before volume save: 0:00:00.023632
INFO:teigen.tgmain:time after volume save: 0:00:00.048442
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:53:04.555145
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
701 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:25.882454
INFO:teigen.tgmain:time before volume generate: 0:00:00.023460
INFO:teigen.tgmain:time before volume save: 0:00:00.023460
INFO:teigen.tgmain:time after volume save: 0:00:00.046987
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:53:32.178611
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
702 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.319747
INFO:teigen.tgmain:time before volume generate: 0:00:00.031162
INFO:teigen.tgmain:time before volume save: 0:00:00.031162
INFO:teigen.tgmain:time after volume save: 0:00:00.069023
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:54:00.363144
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
703 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:25.599613
INFO:teigen.tgmain:time before volume generate: 0:00:00.023505
INFO:teigen.tgmain:time before volume save: 0:00:00.023505
INFO:teigen.tgmain:time after volume save: 0:00:00.053576
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:54:27.743514
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
704 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 10
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:25.902854
INFO:teigen.tgmain:time before volume generate: 0:00:00.023597
INFO:teigen.tgmain:time before volume save: 0:00:00.023597
INFO:teigen.tgmain:time after volume save: 0:00:00.055396
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:54:55.424442
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
705 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:29.986986
INFO:teigen.tgmain:time before volume generate: 0:00:00.023841
INFO:teigen.tgmain:time before volume save: 0:00:00.023841
INFO:teigen.tgmain:time after volume save: 0:00:00.069647
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:55:27.197558
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
706 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:30.219821
INFO:teigen.tgmain:time before volume generate: 0:00:00.025075
INFO:teigen.tgmain:time before volume save: 0:00:00.025075
INFO:teigen.tgmain:time after volume save: 0:00:00.074642
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:55:59.354743
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
707 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:32.455206
INFO:teigen.tgmain:time before volume generate: 0:00:00.024091
INFO:teigen.tgmain:time before volume save: 0:00:00.024091
INFO:teigen.tgmain:time after volume save: 0:00:00.087669
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:56:33.620103
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
708 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:00:32.025013
INFO:teigen.tgmain:time before volume generate: 0:00:00.023538
INFO:teigen.tgmain:time before volume save: 0:00:00.023538
INFO:teigen.tgmain:time after volume save: 0:00:00.087344
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:57:07.464529
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
709 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 20
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:31.927138
INFO:teigen.tgmain:time before volume generate: 0:00:00.024762
INFO:teigen.tgmain:time before volume save: 0:00:00.024762
INFO:teigen.tgmain:time after volume save: 0:00:00.087343
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:57:41.280643
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
710 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:37.870107
INFO:teigen.tgmain:time before volume generate: 0:00:00.027032
INFO:teigen.tgmain:time before volume save: 0:00:00.027032
INFO:teigen.tgmain:time after volume save: 0:00:00.112805
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:58:21.034109
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
711 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:38.890696
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.045028
INFO:teigen.tgmain:time before volume save: 0:00:00.045028
INFO:teigen.tgmain:time after volume save: 0:00:00.160947
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:59:01.955445
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
712 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:43.570525
INFO:teigen.tgmain:time before volume generate: 0:00:00.023414
INFO:teigen.tgmain:time before volume save: 0:00:00.023414
INFO:teigen.tgmain:time after volume save: 0:00:00.133308
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 04:59:47.525135
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
713 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:41.475720
INFO:teigen.tgmain:time before volume generate: 0:00:00.023407
INFO:teigen.tgmain:time before volume save: 0:00:00.023407
INFO:teigen.tgmain:time after volume save: 0:00:00.132789
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:00:30.868569
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
714 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 30
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:42.602511
INFO:teigen.tgmain:time before volume generate: 0:00:00.024034
INFO:teigen.tgmain:time before volume save: 0:00:00.024034
INFO:teigen.tgmain:time after volume save: 0:00:00.131221
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:01:15.357186
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
715 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:50.783247
INFO:teigen.tgmain:time before volume generate: 0:00:00.023298
INFO:teigen.tgmain:time before volume save: 0:00:00.023298
INFO:teigen.tgmain:time after volume save: 0:00:00.163107
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:02:08.112025
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
716 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:51.136823
INFO:teigen.tgmain:time before volume generate: 0:00:00.023156
INFO:teigen.tgmain:time before volume save: 0:00:00.023156
INFO:teigen.tgmain:time after volume save: 0:00:00.161984
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:03:01.187571
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
717 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:01.273198
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.029147
INFO:teigen.tgmain:time before volume save: 0:00:00.029147
INFO:teigen.tgmain:time after volume save: 0:00:00.201593
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:04:04.425638
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
718 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:57.083496
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023576
INFO:teigen.tgmain:time before volume save: 0:00:00.023576
INFO:teigen.tgmain:time after volume save: 0:00:00.192795
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:05:03.447726
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
719 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 40
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:56.520370
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024813
INFO:teigen.tgmain:time before volume save: 0:00:00.024813
INFO:teigen.tgmain:time after volume save: 0:00:00.191562
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:06:02.017784
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
720 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:09.421250
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.039156
INFO:teigen.tgmain:time before volume save: 0:00:00.039156
INFO:teigen.tgmain:time after volume save: 0:00:00.268240
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:07:13.553059
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
721 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:09.068521
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023361
INFO:teigen.tgmain:time before volume save: 0:00:00.023361
INFO:teigen.tgmain:time after volume save: 0:00:00.227000
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:08:24.632138
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
722 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:53.283572
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023994
INFO:teigen.tgmain:time before volume save: 0:00:00.023994
INFO:teigen.tgmain:time after volume save: 0:00:00.270962
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:10:19.976525
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
723 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:44.683380
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.025316
INFO:teigen.tgmain:time before volume save: 0:00:00.025316
INFO:teigen.tgmain:time after volume save: 0:00:00.298275
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:12:06.843646
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
724 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 50
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:01:45.002345
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.027651
INFO:teigen.tgmain:time before volume save: 0:00:00.027651
INFO:teigen.tgmain:time after volume save: 0:00:00.273083
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:13:53.974826
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
725 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:04.403281
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.025206
INFO:teigen.tgmain:time before volume save: 0:00:00.025206
INFO:teigen.tgmain:time after volume save: 0:00:00.309055
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:16:00.586749
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
726 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:04.527534
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023267
INFO:teigen.tgmain:time before volume save: 0:00:00.023267
INFO:teigen.tgmain:time after volume save: 0:00:00.310395
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:18:07.240427
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
727 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:37.340404
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023929
INFO:teigen.tgmain:time before volume save: 0:00:00.023929
INFO:teigen.tgmain:time after volume save: 0:00:00.362636
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:20:46.851078
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
728 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:23.019791
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024211
INFO:teigen.tgmain:time before volume save: 0:00:00.024211
INFO:teigen.tgmain:time after volume save: 0:00:00.357519
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:23:12.037391
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
729 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 60
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:22.013688
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023819
INFO:teigen.tgmain:time before volume save: 0:00:00.023819
INFO:teigen.tgmain:time after volume save: 0:00:00.357742
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:25:36.276167
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
730 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:47.983075
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024275
INFO:teigen.tgmain:time before volume save: 0:00:00.024275
INFO:teigen.tgmain:time after volume save: 0:00:00.402089
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:28:26.676950
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
731 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:02:48.558015
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024460
INFO:teigen.tgmain:time before volume save: 0:00:00.024460
INFO:teigen.tgmain:time after volume save: 0:00:00.412718
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:31:17.453555
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
732 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:35.563009
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.029645
INFO:teigen.tgmain:time before volume save: 0:00:00.029645
INFO:teigen.tgmain:time after volume save: 0:00:00.480045
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:34:55.402692
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
733 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:11.448070
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024050
INFO:teigen.tgmain:time before volume save: 0:00:00.024050
INFO:teigen.tgmain:time after volume save: 0:00:00.504140
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:38:09.248057
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
734 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 70
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:03:08.465622
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023344
INFO:teigen.tgmain:time before volume save: 0:00:00.023344
INFO:teigen.tgmain:time after volume save: 0:00:00.466969
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:41:20.156828
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
735 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
INFO:teigen.tgmain:time: 0:00:02.772256
INFO:teigen.tgmain:time before volume generate: 0:00:00.019354
INFO:teigen.tgmain:time before volume save: 0:00:00.019354
INFO:teigen.tgmain:time after volume save: 0:00:00.042762
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:41:24.824155
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
736 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:02.830910
INFO:teigen.tgmain:time before volume generate: 0:00:00.027052
INFO:teigen.tgmain:time before volume save: 0:00:00.027052
INFO:teigen.tgmain:time after volume save: 0:00:00.055156
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:41:29.489006
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
737 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:03.805862
INFO:teigen.tgmain:time before volume generate: 0:00:00.041655
INFO:teigen.tgmain:time before volume save: 0:00:00.041655
INFO:teigen.tgmain:time after volume save: 0:00:00.081863
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:41:35.172118
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
738 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:03.374758
INFO:teigen.tgmain:time before volume generate: 0:00:00.027592
INFO:teigen.tgmain:time before volume save: 0:00:00.027592
INFO:teigen.tgmain:time after volume save: 0:00:00.066191
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:41:40.401654
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
739 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:03.575052
INFO:teigen.tgmain:time before volume generate: 0:00:00.019289
INFO:teigen.tgmain:time before volume save: 0:00:00.019289
INFO:teigen.tgmain:time after volume save: 0:00:00.049351
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:41:45.790463
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
740 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:06.029796
INFO:teigen.tgmain:time before volume generate: 0:00:00.019883
INFO:teigen.tgmain:time before volume save: 0:00:00.019883
INFO:teigen.tgmain:time after volume save: 0:00:00.062142
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:41:53.641502
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
741 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:06.107673
INFO:teigen.tgmain:time before volume generate: 0:00:00.019151
INFO:teigen.tgmain:time before volume save: 0:00:00.019151
INFO:teigen.tgmain:time after volume save: 0:00:00.060680
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:42:01.592903
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
742 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
INFO:teigen.tgmain:time: 0:00:08.092420
INFO:teigen.tgmain:time before volume generate: 0:00:00.031274
INFO:teigen.tgmain:time before volume save: 0:00:00.031274
INFO:teigen.tgmain:time after volume save: 0:00:00.106920
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:42:11.559498
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
743 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:07.223440
INFO:teigen.tgmain:time before volume generate: 0:00:00.019395
INFO:teigen.tgmain:time before volume save: 0:00:00.019395
INFO:teigen.tgmain:time after volume save: 0:00:00.075622
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:42:20.607012
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
744 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:07.364100
INFO:teigen.tgmain:time before volume generate: 0:00:00.019242
INFO:teigen.tgmain:time before volume save: 0:00:00.019242
INFO:teigen.tgmain:time after volume save: 0:00:00.074534
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:42:29.827532
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
745 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:11.002434
INFO:teigen.tgmain:time before volume generate: 0:00:00.034355
INFO:teigen.tgmain:time before volume save: 0:00:00.034355
INFO:teigen.tgmain:time after volume save: 0:00:00.132610
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:42:42.869717
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
746 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:11.313218
INFO:teigen.tgmain:time before volume generate: 0:00:00.019754
INFO:teigen.tgmain:time before volume save: 0:00:00.019754
INFO:teigen.tgmain:time after volume save: 0:00:00.090890
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:42:56.010525
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
747 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:14.976031
INFO:teigen.tgmain:time before volume generate: 0:00:00.031636
INFO:teigen.tgmain:time before volume save: 0:00:00.031636
INFO:teigen.tgmain:time after volume save: 0:00:00.149201
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:43:12.909171
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
748 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:13.456098
INFO:teigen.tgmain:time before volume generate: 0:00:00.020914
INFO:teigen.tgmain:time before volume save: 0:00:00.020914
INFO:teigen.tgmain:time after volume save: 0:00:00.113588
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:43:28.251540
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
749 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:13.404453
INFO:teigen.tgmain:time before volume generate: 0:00:00.018954
INFO:teigen.tgmain:time before volume save: 0:00:00.018954
INFO:teigen.tgmain:time after volume save: 0:00:00.109996
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:43:43.520985
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
750 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:27.557177
INFO:teigen.tgmain:time before volume generate: 0:00:00.031753
INFO:teigen.tgmain:time before volume save: 0:00:00.031753
INFO:teigen.tgmain:time after volume save: 0:00:00.069809
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:44:12.939998
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
751 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
INFO:teigen.tgmain:time: 0:00:26.958923
INFO:teigen.tgmain:time before volume generate: 0:00:00.035225
INFO:teigen.tgmain:time before volume save: 0:00:00.035225
INFO:teigen.tgmain:time after volume save: 0:00:00.077245
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:44:41.817945
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
752 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:29.425355
INFO:teigen.tgmain:time before volume generate: 0:00:00.023671
INFO:teigen.tgmain:time before volume save: 0:00:00.023671
INFO:teigen.tgmain:time after volume save: 0:00:00.068209
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:45:13.152969
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
753 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:28.008090
INFO:teigen.tgmain:time before volume generate: 0:00:00.024074
INFO:teigen.tgmain:time before volume save: 0:00:00.024074
INFO:teigen.tgmain:time after volume save: 0:00:00.067473
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:45:42.982461
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
754 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:28.529159
INFO:teigen.tgmain:time before volume generate: 0:00:00.040572
INFO:teigen.tgmain:time before volume save: 0:00:00.040572
INFO:teigen.tgmain:time after volume save: 0:00:00.102910
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:46:13.398950
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
755 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:33.231951
INFO:teigen.tgmain:time before volume generate: 0:00:00.024526
INFO:teigen.tgmain:time before volume save: 0:00:00.024526
INFO:teigen.tgmain:time after volume save: 0:00:00.089202
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:46:48.654469
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
756 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:00:33.721923
INFO:teigen.tgmain:time before volume generate: 0:00:00.024130
INFO:teigen.tgmain:time before volume save: 0:00:00.024130
INFO:teigen.tgmain:time after volume save: 0:00:00.085246
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:47:24.186349
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
757 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:00:36.733852
INFO:teigen.tgmain:time before volume generate: 0:00:00.030513
INFO:teigen.tgmain:time before volume save: 0:00:00.030513
INFO:teigen.tgmain:time after volume save: 0:00:00.113262
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:48:02.918577
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
758 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:35.781509
INFO:teigen.tgmain:time before volume generate: 0:00:00.024281
INFO:teigen.tgmain:time before volume save: 0:00:00.024281
INFO:teigen.tgmain:time after volume save: 0:00:00.106868
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:48:40.581833
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
759 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:36.758461
INFO:teigen.tgmain:time before volume generate: 0:00:00.024440
INFO:teigen.tgmain:time before volume save: 0:00:00.024440
INFO:teigen.tgmain:time after volume save: 0:00:00.106053
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:49:19.206944
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
760 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:42.712228
INFO:teigen.tgmain:time before volume generate: 0:00:00.023272
INFO:teigen.tgmain:time before volume save: 0:00:00.023272
INFO:teigen.tgmain:time after volume save: 0:00:00.130129
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:50:03.941870
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
761 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:42.924676
INFO:teigen.tgmain:time before volume generate: 0:00:00.024507
INFO:teigen.tgmain:time before volume save: 0:00:00.024507
INFO:teigen.tgmain:time after volume save: 0:00:00.143943
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:50:48.899541
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
762 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:50.123904
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.031740
INFO:teigen.tgmain:time before volume save: 0:00:00.031740
INFO:teigen.tgmain:time after volume save: 0:00:00.184024
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:51:40.974921
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
763 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:48.011149
INFO:teigen.tgmain:time before volume generate: 0:00:00.023370
INFO:teigen.tgmain:time before volume save: 0:00:00.023370
INFO:teigen.tgmain:time after volume save: 0:00:00.161137
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:52:30.899007
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
764 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:48.400080
INFO:teigen.tgmain:time before volume generate: 0:00:00.030647
INFO:teigen.tgmain:time before volume save: 0:00:00.030647
INFO:teigen.tgmain:time after volume save: 0:00:00.167285
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:53:21.210535
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
765 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.690850
INFO:teigen.tgmain:time before volume generate: 0:00:00.039029
INFO:teigen.tgmain:time before volume save: 0:00:00.039029
INFO:teigen.tgmain:time after volume save: 0:00:00.084876
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:53:49.843578
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
766 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:27.400730
INFO:teigen.tgmain:time before volume generate: 0:00:00.047686
INFO:teigen.tgmain:time before volume save: 0:00:00.047686
INFO:teigen.tgmain:time after volume save: 0:00:00.081247
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:54:19.083907
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
767 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:29.257692
INFO:teigen.tgmain:time before volume generate: 0:00:00.023032
INFO:teigen.tgmain:time before volume save: 0:00:00.023032
INFO:teigen.tgmain:time after volume save: 0:00:00.067873
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:54:50.206238
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
768 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:27.971298
INFO:teigen.tgmain:time before volume generate: 0:00:00.023225
INFO:teigen.tgmain:time before volume save: 0:00:00.023225
INFO:teigen.tgmain:time after volume save: 0:00:00.066374
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:55:19.967284
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
769 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:28.466629
INFO:teigen.tgmain:time before volume generate: 0:00:00.023521
INFO:teigen.tgmain:time before volume save: 0:00:00.023521
INFO:teigen.tgmain:time after volume save: 0:00:00.068424
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:55:50.231866
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
770 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:33.161634
INFO:teigen.tgmain:time before volume generate: 0:00:00.024515
INFO:teigen.tgmain:time before volume save: 0:00:00.024515
INFO:teigen.tgmain:time after volume save: 0:00:00.085459
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:56:25.239175
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
771 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:33.246365
INFO:teigen.tgmain:time before volume generate: 0:00:00.033703
INFO:teigen.tgmain:time before volume save: 0:00:00.033703
INFO:teigen.tgmain:time after volume save: 0:00:00.107453
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:57:00.373870
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
772 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:37.231674
INFO:teigen.tgmain:time before volume generate: 0:00:00.023622
INFO:teigen.tgmain:time before volume save: 0:00:00.023622
INFO:teigen.tgmain:time after volume save: 0:00:00.106328
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:57:39.466764
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
773 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:35.824213
INFO:teigen.tgmain:time before volume generate: 0:00:00.025095
INFO:teigen.tgmain:time before volume save: 0:00:00.025095
INFO:teigen.tgmain:time after volume save: 0:00:00.121205
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:58:17.181649
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
774 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:36.518154
INFO:teigen.tgmain:time before volume generate: 0:00:00.023278
INFO:teigen.tgmain:time before volume save: 0:00:00.023278
INFO:teigen.tgmain:time after volume save: 0:00:00.104650
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:58:55.684692
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
775 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:43.454492
INFO:teigen.tgmain:time before volume generate: 0:00:00.024251
INFO:teigen.tgmain:time before volume save: 0:00:00.024251
INFO:teigen.tgmain:time after volume save: 0:00:00.128759
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 05:59:41.026332
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
776 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:42.912632
INFO:teigen.tgmain:time before volume generate: 0:00:00.023598
INFO:teigen.tgmain:time before volume save: 0:00:00.023598
INFO:teigen.tgmain:time after volume save: 0:00:00.128490
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:00:25.825862
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
777 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
INFO:teigen.tgmain:time: 0:00:50.644993
progess: 0.933333333333
generate vtk finished
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.028948
INFO:teigen.tgmain:time before volume save: 0:00:00.028948
INFO:teigen.tgmain:time after volume save: 0:00:00.172568
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:01:18.425549
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
778 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:48.155326
INFO:teigen.tgmain:time before volume generate: 0:00:00.033995
INFO:teigen.tgmain:time before volume save: 0:00:00.033995
INFO:teigen.tgmain:time after volume save: 0:00:00.171331
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:02:08.525839
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
779 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:48.190468
INFO:teigen.tgmain:time before volume generate: 0:00:00.023459
INFO:teigen.tgmain:time before volume save: 0:00:00.023459
INFO:teigen.tgmain:time after volume save: 0:00:00.157100
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:02:58.650568
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
780 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.939812
INFO:teigen.tgmain:time before volume generate: 0:00:00.034762
INFO:teigen.tgmain:time before volume save: 0:00:00.034762
INFO:teigen.tgmain:time after volume save: 0:00:00.077033
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:03:27.445439
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
781 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.972299
INFO:teigen.tgmain:time before volume generate: 0:00:00.023275
INFO:teigen.tgmain:time before volume save: 0:00:00.023275
INFO:teigen.tgmain:time after volume save: 0:00:00.054986
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:03:56.321661
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
782 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:29.662899
INFO:teigen.tgmain:time before volume generate: 0:00:00.023505
INFO:teigen.tgmain:time before volume save: 0:00:00.023505
INFO:teigen.tgmain:time after volume save: 0:00:00.068115
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:04:27.816591
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
783 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:28.224386
INFO:teigen.tgmain:time before volume generate: 0:00:00.023412
INFO:teigen.tgmain:time before volume save: 0:00:00.023412
INFO:teigen.tgmain:time after volume save: 0:00:00.068239
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:04:57.886875
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
784 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:28.619061
INFO:teigen.tgmain:time before volume generate: 0:00:00.023464
INFO:teigen.tgmain:time before volume save: 0:00:00.023464
INFO:teigen.tgmain:time after volume save: 0:00:00.067562
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:05:28.356836
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
785 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:33.174558
INFO:teigen.tgmain:time before volume generate: 0:00:00.035990
INFO:teigen.tgmain:time before volume save: 0:00:00.035990
INFO:teigen.tgmain:time after volume save: 0:00:00.113946
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:06:03.415796
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
786 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:33.453957
INFO:teigen.tgmain:time before volume generate: 0:00:00.035061
INFO:teigen.tgmain:time before volume save: 0:00:00.035061
INFO:teigen.tgmain:time after volume save: 0:00:00.111434
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:06:38.816426
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
787 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:37.840345
INFO:teigen.tgmain:time before volume generate: 0:00:00.023554
INFO:teigen.tgmain:time before volume save: 0:00:00.023554
INFO:teigen.tgmain:time after volume save: 0:00:00.108064
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:07:18.610175
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
788 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:35.887868
INFO:teigen.tgmain:time before volume generate: 0:00:00.024525
INFO:teigen.tgmain:time before volume save: 0:00:00.024525
INFO:teigen.tgmain:time after volume save: 0:00:00.110962
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:07:56.374556
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
789 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:35.928345
INFO:teigen.tgmain:time before volume generate: 0:00:00.033483
INFO:teigen.tgmain:time before volume save: 0:00:00.033483
INFO:teigen.tgmain:time after volume save: 0:00:00.115648
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:08:34.172434
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
790 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
INFO:teigen.tgmain:time: 0:00:43.192692
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024842
INFO:teigen.tgmain:time before volume save: 0:00:00.024842
INFO:teigen.tgmain:time after volume save: 0:00:00.186611
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:09:19.694884
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
791 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:42.956912
INFO:teigen.tgmain:time before volume generate: 0:00:00.023329
INFO:teigen.tgmain:time before volume save: 0:00:00.023329
INFO:teigen.tgmain:time after volume save: 0:00:00.130376
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:10:04.540556
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
792 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:50.548307
INFO:teigen.tgmain:time before volume generate: 0:00:00.023665
INFO:teigen.tgmain:time before volume save: 0:00:00.023665
INFO:teigen.tgmain:time after volume save: 0:00:00.160114
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:10:57.002725
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
793 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:48.107666
INFO:teigen.tgmain:time before volume generate: 0:00:00.023509
INFO:teigen.tgmain:time before volume save: 0:00:00.023509
INFO:teigen.tgmain:time after volume save: 0:00:00.160809
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:11:47.046517
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
794 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:47.754510
INFO:teigen.tgmain:time before volume generate: 0:00:00.024013
INFO:teigen.tgmain:time before volume save: 0:00:00.024013
INFO:teigen.tgmain:time after volume save: 0:00:00.156521
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:12:36.751153
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
795 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:27.717563
INFO:teigen.tgmain:time before volume generate: 0:00:00.032530
INFO:teigen.tgmain:time before volume save: 0:00:00.032530
INFO:teigen.tgmain:time after volume save: 0:00:00.072222
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:13:06.324800
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
796 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.798677
INFO:teigen.tgmain:time before volume generate: 0:00:00.023491
INFO:teigen.tgmain:time before volume save: 0:00:00.023491
INFO:teigen.tgmain:time after volume save: 0:00:00.055339
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:13:34.916232
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
797 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:29.052539
INFO:teigen.tgmain:time before volume generate: 0:00:00.023619
INFO:teigen.tgmain:time before volume save: 0:00:00.023619
INFO:teigen.tgmain:time after volume save: 0:00:00.068448
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:14:05.789827
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
798 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:28.860736
INFO:teigen.tgmain:time before volume generate: 0:00:00.026282
INFO:teigen.tgmain:time before volume save: 0:00:00.026282
INFO:teigen.tgmain:time after volume save: 0:00:00.073848
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:14:36.509673
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
799 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:28.502525
INFO:teigen.tgmain:time before volume generate: 0:00:00.023449
INFO:teigen.tgmain:time before volume save: 0:00:00.023449
INFO:teigen.tgmain:time after volume save: 0:00:00.066975
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:15:06.800215
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
800 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:33.107552
INFO:teigen.tgmain:time before volume generate: 0:00:00.023695
INFO:teigen.tgmain:time before volume save: 0:00:00.023695
INFO:teigen.tgmain:time after volume save: 0:00:00.084802
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:15:41.784246
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
801 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:33.010914
INFO:teigen.tgmain:time before volume generate: 0:00:00.023426
INFO:teigen.tgmain:time before volume save: 0:00:00.023426
INFO:teigen.tgmain:time after volume save: 0:00:00.084446
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:16:16.620402
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
802 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:37.554874
INFO:teigen.tgmain:time before volume generate: 0:00:00.023390
INFO:teigen.tgmain:time before volume save: 0:00:00.023390
INFO:teigen.tgmain:time after volume save: 0:00:00.106233
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:16:56.057744
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
803 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:35.948781
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.023223
INFO:teigen.tgmain:time before volume save: 0:00:00.023223
INFO:teigen.tgmain:time after volume save: 0:00:00.188665
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:17:34.004872
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
804 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:00:35.879464
INFO:teigen.tgmain:time before volume generate: 0:00:00.023978
INFO:teigen.tgmain:time before volume save: 0:00:00.023978
INFO:teigen.tgmain:time after volume save: 0:00:00.105506
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:18:11.887816
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
805 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:43.271702
INFO:teigen.tgmain:time before volume generate: 0:00:00.023895
INFO:teigen.tgmain:time before volume save: 0:00:00.023895
INFO:teigen.tgmain:time after volume save: 0:00:00.128530
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:18:57.033927
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
806 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:43.478816
INFO:teigen.tgmain:time before volume generate: 0:00:00.023568
INFO:teigen.tgmain:time before volume save: 0:00:00.023568
INFO:teigen.tgmain:time after volume save: 0:00:00.128273
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:19:42.456442
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
807 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:50.689494
INFO:teigen.tgmain:time before volume generate: 0:00:00.023637
INFO:teigen.tgmain:time before volume save: 0:00:00.023637
INFO:teigen.tgmain:time after volume save: 0:00:00.161922
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:20:35.134972
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
808 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:00:48.163345
generate vtk finished
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.037428
INFO:teigen.tgmain:time before volume save: 0:00:00.037428
INFO:teigen.tgmain:time after volume save: 0:00:00.195537
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:21:25.445829
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
809 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:48.389371
INFO:teigen.tgmain:time before volume generate: 0:00:00.023351
INFO:teigen.tgmain:time before volume save: 0:00:00.023351
INFO:teigen.tgmain:time after volume save: 0:00:00.158756
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:22:15.844138
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
810 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.988635
INFO:teigen.tgmain:time before volume generate: 0:00:00.025278
INFO:teigen.tgmain:time before volume save: 0:00:00.025278
INFO:teigen.tgmain:time after volume save: 0:00:00.058643
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:22:44.655704
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
811 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:27.155439
INFO:teigen.tgmain:time before volume generate: 0:00:00.023974
INFO:teigen.tgmain:time before volume save: 0:00:00.023974
INFO:teigen.tgmain:time after volume save: 0:00:00.055960
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:23:13.627764
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
812 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:28.958007
INFO:teigen.tgmain:time before volume generate: 0:00:00.024306
INFO:teigen.tgmain:time before volume save: 0:00:00.024306
INFO:teigen.tgmain:time after volume save: 0:00:00.069699
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:23:44.502725
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
813 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:28.313510
INFO:teigen.tgmain:time before volume generate: 0:00:00.023371
INFO:teigen.tgmain:time before volume save: 0:00:00.023371
INFO:teigen.tgmain:time after volume save: 0:00:00.067237
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:24:14.635009
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
814 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:29.124389
INFO:teigen.tgmain:time before volume generate: 0:00:00.024760
INFO:teigen.tgmain:time before volume save: 0:00:00.024760
INFO:teigen.tgmain:time after volume save: 0:00:00.071077
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:24:45.645261
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
815 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:33.444430
INFO:teigen.tgmain:time before volume generate: 0:00:00.024364
INFO:teigen.tgmain:time before volume save: 0:00:00.024364
INFO:teigen.tgmain:time after volume save: 0:00:00.085881
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:25:20.924872
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
816 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:32.886324
INFO:teigen.tgmain:time before volume generate: 0:00:00.023659
INFO:teigen.tgmain:time before volume save: 0:00:00.023659
INFO:teigen.tgmain:time after volume save: 0:00:00.084667
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:25:55.649234
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
817 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
INFO:teigen.tgmain:time: 0:00:36.672644
INFO:teigen.tgmain:time before volume generate: 0:00:00.023841
INFO:teigen.tgmain:time before volume save: 0:00:00.023841
INFO:teigen.tgmain:time after volume save: 0:00:00.106516
progess: 0.933333333333
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:26:34.286330
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
818 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:36.692048
INFO:teigen.tgmain:time before volume generate: 0:00:00.023820
INFO:teigen.tgmain:time before volume save: 0:00:00.023820
INFO:teigen.tgmain:time after volume save: 0:00:00.105550
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:27:12.909576
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
819 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:36.095476
INFO:teigen.tgmain:time before volume generate: 0:00:00.024114
INFO:teigen.tgmain:time before volume save: 0:00:00.024114
INFO:teigen.tgmain:time after volume save: 0:00:00.105640
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:27:50.875391
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
820 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:43.014942
INFO:teigen.tgmain:time before volume generate: 0:00:00.023798
INFO:teigen.tgmain:time before volume save: 0:00:00.023798
INFO:teigen.tgmain:time after volume save: 0:00:00.128737
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:28:35.790978
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
821 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:43.254594
INFO:teigen.tgmain:time before volume generate: 0:00:00.038256
INFO:teigen.tgmain:time before volume save: 0:00:00.038256
step1 finished
INFO:teigen.tgmain:time after volume save: 0:00:00.165570
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:29:20.984507
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
822 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:51.134142
INFO:teigen.tgmain:time before volume generate: 0:00:00.023327
INFO:teigen.tgmain:time before volume save: 0:00:00.023327
INFO:teigen.tgmain:time after volume save: 0:00:00.161220
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:30:14.067829
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
823 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:48.111197
INFO:teigen.tgmain:time before volume generate: 0:00:00.023445
INFO:teigen.tgmain:time before volume save: 0:00:00.023445
INFO:teigen.tgmain:time after volume save: 0:00:00.163692
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:31:04.118159
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
824 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:47.983836
INFO:teigen.tgmain:time before volume generate: 0:00:00.024862
INFO:teigen.tgmain:time before volume save: 0:00:00.024862
INFO:teigen.tgmain:time after volume save: 0:00:00.157739
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:31:54.084478
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
825 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.818138
INFO:teigen.tgmain:time before volume generate: 0:00:00.023871
INFO:teigen.tgmain:time before volume save: 0:00:00.023871
INFO:teigen.tgmain:time after volume save: 0:00:00.055946
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:32:22.693178
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
826 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:27.219205
INFO:teigen.tgmain:time before volume generate: 0:00:00.023382
INFO:teigen.tgmain:time before volume save: 0:00:00.023382
INFO:teigen.tgmain:time after volume save: 0:00:00.055007
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:32:51.712474
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
827 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:29.267693
INFO:teigen.tgmain:time before volume generate: 0:00:00.023955
INFO:teigen.tgmain:time before volume save: 0:00:00.023955
INFO:teigen.tgmain:time after volume save: 0:00:00.068696
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:33:22.844889
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
828 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:28.091796
INFO:teigen.tgmain:time before volume generate: 0:00:00.023283
INFO:teigen.tgmain:time before volume save: 0:00:00.023283
INFO:teigen.tgmain:time after volume save: 0:00:00.066546
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:33:52.828121
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
829 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:28.648893
INFO:teigen.tgmain:time before volume generate: 0:00:00.023170
INFO:teigen.tgmain:time before volume save: 0:00:00.023170
INFO:teigen.tgmain:time after volume save: 0:00:00.067184
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:34:23.275850
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
830 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:34.181842
INFO:teigen.tgmain:time before volume generate: 0:00:00.031262
INFO:teigen.tgmain:time before volume save: 0:00:00.031262
INFO:teigen.tgmain:time after volume save: 0:00:00.100135
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:34:59.331182
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
831 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:32.987439
INFO:teigen.tgmain:time before volume generate: 0:00:00.033874
INFO:teigen.tgmain:time before volume save: 0:00:00.033874
INFO:teigen.tgmain:time after volume save: 0:00:00.095185
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:35:34.175576
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
832 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:36.812820
INFO:teigen.tgmain:time before volume generate: 0:00:00.023468
INFO:teigen.tgmain:time before volume save: 0:00:00.023468
INFO:teigen.tgmain:time after volume save: 0:00:00.107613
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:36:12.892429
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
833 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:35.880390
INFO:teigen.tgmain:time before volume generate: 0:00:00.023574
INFO:teigen.tgmain:time before volume save: 0:00:00.023574
INFO:teigen.tgmain:time after volume save: 0:00:00.106043
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:36:50.652397
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
834 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:36.249177
INFO:teigen.tgmain:time before volume generate: 0:00:00.038971
INFO:teigen.tgmain:time before volume save: 0:00:00.038971
step1 finished
INFO:teigen.tgmain:time after volume save: 0:00:00.144124
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:37:28.868185
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
835 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:42.728002
INFO:teigen.tgmain:time before volume generate: 0:00:00.024104
INFO:teigen.tgmain:time before volume save: 0:00:00.024104
INFO:teigen.tgmain:time after volume save: 0:00:00.131332
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:38:13.501547
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
836 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:43.192406
INFO:teigen.tgmain:time before volume generate: 0:00:00.035122
INFO:teigen.tgmain:time before volume save: 0:00:00.035122
INFO:teigen.tgmain:time after volume save: 0:00:00.156386
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:38:58.738288
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
837 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:50.873634
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.040450
INFO:teigen.tgmain:time before volume save: 0:00:00.040450
INFO:teigen.tgmain:time after volume save: 0:00:00.205281
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:39:51.683476
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
838 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:48.180484
INFO:teigen.tgmain:time before volume generate: 0:00:00.025629
INFO:teigen.tgmain:time before volume save: 0:00:00.025629
INFO:teigen.tgmain:time after volume save: 0:00:00.161780
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:40:41.796600
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
839 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:48.372878
INFO:teigen.tgmain:time before volume generate: 0:00:00.024013
INFO:teigen.tgmain:time before volume save: 0:00:00.024013
INFO:teigen.tgmain:time after volume save: 0:00:00.166451
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:41:32.108223
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
840 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:02.872733
INFO:teigen.tgmain:time before volume generate: 0:00:00.029985
INFO:teigen.tgmain:time before volume save: 0:00:00.029985
INFO:teigen.tgmain:time after volume save: 0:00:00.061129
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:41:36.862724
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
841 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
INFO:teigen.tgmain:time: 0:00:02.849501
INFO:teigen.tgmain:time before volume generate: 0:00:00.019436
INFO:teigen.tgmain:time before volume save: 0:00:00.019436
INFO:teigen.tgmain:time after volume save: 0:00:00.042023
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:41:41.596380
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
842 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:03.869566
INFO:teigen.tgmain:time before volume generate: 0:00:00.019710
INFO:teigen.tgmain:time before volume save: 0:00:00.019710
INFO:teigen.tgmain:time after volume save: 0:00:00.050826
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:41:47.300675
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
843 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:03.355606
INFO:teigen.tgmain:time before volume generate: 0:00:00.021047
INFO:teigen.tgmain:time before volume save: 0:00:00.021047
INFO:teigen.tgmain:time after volume save: 0:00:00.051072
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:41:52.483951
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
844 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:03.569948
INFO:teigen.tgmain:time before volume generate: 0:00:00.019918
INFO:teigen.tgmain:time before volume save: 0:00:00.019918
INFO:teigen.tgmain:time after volume save: 0:00:00.051810
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:41:57.891183
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
845 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:06.132689
INFO:teigen.tgmain:time before volume generate: 0:00:00.019056
INFO:teigen.tgmain:time before volume save: 0:00:00.019056
INFO:teigen.tgmain:time after volume save: 0:00:00.060700
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:42:05.860697
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
846 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
INFO:teigen.tgmain:time: 0:00:05.963881
INFO:teigen.tgmain:time before volume generate: 0:00:00.030342
INFO:teigen.tgmain:time before volume save: 0:00:00.030342
INFO:teigen.tgmain:time after volume save: 0:00:00.086392
progess: 0.9
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:42:13.776070
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
847 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:07.847996
INFO:teigen.tgmain:time before volume generate: 0:00:00.019051
INFO:teigen.tgmain:time before volume save: 0:00:00.019051
INFO:teigen.tgmain:time after volume save: 0:00:00.075398
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:42:23.469953
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
848 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:07.257961
INFO:teigen.tgmain:time before volume generate: 0:00:00.035197
INFO:teigen.tgmain:time before volume save: 0:00:00.035197
INFO:teigen.tgmain:time after volume save: 0:00:00.115990
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:42:32.635920
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
849 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:07.376206
INFO:teigen.tgmain:time before volume generate: 0:00:00.019311
INFO:teigen.tgmain:time before volume save: 0:00:00.019311
INFO:teigen.tgmain:time after volume save: 0:00:00.074528
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:42:41.971870
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
850 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
INFO:teigen.tgmain:time: 0:00:11.235023
INFO:teigen.tgmain:time before volume generate: 0:00:00.019043
INFO:teigen.tgmain:time before volume save: 0:00:00.019043
INFO:teigen.tgmain:time after volume save: 0:00:00.090328
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:42:55.075343
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
851 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:11.004009
INFO:teigen.tgmain:time before volume generate: 0:00:00.019310
INFO:teigen.tgmain:time before volume save: 0:00:00.019310
INFO:teigen.tgmain:time after volume save: 0:00:00.090919
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:43:07.959622
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
852 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:14.731200
INFO:teigen.tgmain:time before volume generate: 0:00:00.034034
INFO:teigen.tgmain:time before volume save: 0:00:00.034034
step1 finished
INFO:teigen.tgmain:time after volume save: 0:00:00.156313
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:43:24.662684
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
853 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:13.337330
INFO:teigen.tgmain:time before volume generate: 0:00:00.019040
INFO:teigen.tgmain:time before volume save: 0:00:00.019040
INFO:teigen.tgmain:time after volume save: 0:00:00.141991
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:43:40.034585
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
854 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 186, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.1
progess: 0.2
progess: 0.3
progess: 0.4
progess: 0.5
progess: 0.6
progess: 0.7
progess: 0.8
progess: 0.9
generate vtk finished
INFO:teigen.tgmain:time: 0:00:13.321041
INFO:teigen.tgmain:time before volume generate: 0:00:00.020279
INFO:teigen.tgmain:time before volume save: 0:00:00.020279
INFO:teigen.tgmain:time after volume save: 0:00:00.110662
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:43:55.296483
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
855 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.855015
INFO:teigen.tgmain:time before volume generate: 0:00:00.023497
INFO:teigen.tgmain:time before volume save: 0:00:00.023497
INFO:teigen.tgmain:time after volume save: 0:00:00.055593
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:44:23.943873
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
856 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:28.293132
INFO:teigen.tgmain:time before volume generate: 0:00:00.023474
INFO:teigen.tgmain:time before volume save: 0:00:00.023474
INFO:teigen.tgmain:time after volume save: 0:00:00.055226
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:44:54.051618
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
857 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:29.005982
INFO:teigen.tgmain:time before volume generate: 0:00:00.023699
INFO:teigen.tgmain:time before volume save: 0:00:00.023699
INFO:teigen.tgmain:time after volume save: 0:00:00.070303
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:45:24.871218
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
858 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:28.045583
INFO:teigen.tgmain:time before volume generate: 0:00:00.023687
INFO:teigen.tgmain:time before volume save: 0:00:00.023687
INFO:teigen.tgmain:time after volume save: 0:00:00.067110
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:45:54.744765
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
859 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:28.536725
INFO:teigen.tgmain:time before volume generate: 0:00:00.024040
INFO:teigen.tgmain:time before volume save: 0:00:00.024040
INFO:teigen.tgmain:time after volume save: 0:00:00.078195
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:46:25.126677
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
860 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:33.375328
INFO:teigen.tgmain:time before volume generate: 0:00:00.023742
INFO:teigen.tgmain:time before volume save: 0:00:00.023742
INFO:teigen.tgmain:time after volume save: 0:00:00.084964
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:47:00.342707
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
861 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:33.560869
INFO:teigen.tgmain:time before volume generate: 0:00:00.023316
INFO:teigen.tgmain:time before volume save: 0:00:00.023316
INFO:teigen.tgmain:time after volume save: 0:00:00.084659
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:47:35.834312
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
862 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:36.775507
INFO:teigen.tgmain:time before volume generate: 0:00:00.023251
INFO:teigen.tgmain:time before volume save: 0:00:00.023251
INFO:teigen.tgmain:time after volume save: 0:00:00.106142
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:48:14.492454
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
863 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
INFO:teigen.tgmain:time: 0:00:36.116148
INFO:teigen.tgmain:time before volume generate: 0:00:00.023384
INFO:teigen.tgmain:time before volume save: 0:00:00.023384
INFO:teigen.tgmain:time after volume save: 0:00:00.106726
progess: 0.933333333333
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:48:52.488007
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
864 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:35.976863
INFO:teigen.tgmain:time before volume generate: 0:00:00.024963
INFO:teigen.tgmain:time before volume save: 0:00:00.024963
INFO:teigen.tgmain:time after volume save: 0:00:00.106761
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:49:30.324257
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
865 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:43.192850
INFO:teigen.tgmain:time before volume generate: 0:00:00.023188
INFO:teigen.tgmain:time before volume save: 0:00:00.023188
INFO:teigen.tgmain:time after volume save: 0:00:00.127829
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:50:15.538316
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
866 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:43.273724
INFO:teigen.tgmain:time before volume generate: 0:00:00.023331
INFO:teigen.tgmain:time before volume save: 0:00:00.023331
INFO:teigen.tgmain:time after volume save: 0:00:00.128591
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:51:00.702776
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
867 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:50.578936
INFO:teigen.tgmain:time before volume generate: 0:00:00.024216
INFO:teigen.tgmain:time before volume save: 0:00:00.024216
INFO:teigen.tgmain:time after volume save: 0:00:00.166116
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:51:53.238752
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
868 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:48.104841
INFO:teigen.tgmain:time before volume generate: 0:00:00.023861
INFO:teigen.tgmain:time before volume save: 0:00:00.023861
INFO:teigen.tgmain:time after volume save: 0:00:00.159948
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:52:43.307073
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
869 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:48.307569
INFO:teigen.tgmain:time before volume generate: 0:00:00.023566
INFO:teigen.tgmain:time before volume save: 0:00:00.023566
INFO:teigen.tgmain:time after volume save: 0:00:00.156499
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:53:33.670108
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
870 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:27.024962
INFO:teigen.tgmain:time before volume generate: 0:00:00.023472
INFO:teigen.tgmain:time before volume save: 0:00:00.023472
INFO:teigen.tgmain:time after volume save: 0:00:00.055557
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:54:02.486022
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
871 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.802986
INFO:teigen.tgmain:time before volume generate: 0:00:00.023317
INFO:teigen.tgmain:time before volume save: 0:00:00.023317
INFO:teigen.tgmain:time after volume save: 0:00:00.064102
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:54:31.164892
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
872 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:29.746269
INFO:teigen.tgmain:time before volume generate: 0:00:00.035910
INFO:teigen.tgmain:time before volume save: 0:00:00.035910
INFO:teigen.tgmain:time after volume save: 0:00:00.093991
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:55:02.815278
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
873 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:27.876671
INFO:teigen.tgmain:time before volume generate: 0:00:00.023559
INFO:teigen.tgmain:time before volume save: 0:00:00.023559
INFO:teigen.tgmain:time after volume save: 0:00:00.067043
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:55:32.503192
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
874 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:28.407064
INFO:teigen.tgmain:time before volume generate: 0:00:00.023662
INFO:teigen.tgmain:time before volume save: 0:00:00.023662
INFO:teigen.tgmain:time after volume save: 0:00:00.067983
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:56:02.777792
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
875 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:33.079297
INFO:teigen.tgmain:time before volume generate: 0:00:00.023826
INFO:teigen.tgmain:time before volume save: 0:00:00.023826
INFO:teigen.tgmain:time after volume save: 0:00:00.084638
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:56:37.745140
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
876 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:33.806400
INFO:teigen.tgmain:time before volume generate: 0:00:00.024388
INFO:teigen.tgmain:time before volume save: 0:00:00.024388
INFO:teigen.tgmain:time after volume save: 0:00:00.085434
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:57:13.420222
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
877 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:36.781398
INFO:teigen.tgmain:time before volume generate: 0:00:00.023921
INFO:teigen.tgmain:time before volume save: 0:00:00.023921
INFO:teigen.tgmain:time after volume save: 0:00:00.106403
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:57:52.068261
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
878 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:35.978842
INFO:teigen.tgmain:time before volume generate: 0:00:00.023555
INFO:teigen.tgmain:time before volume save: 0:00:00.023555
INFO:teigen.tgmain:time after volume save: 0:00:00.105724
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:58:29.974741
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
879 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:36.570330
INFO:teigen.tgmain:time before volume generate: 0:00:00.026645
INFO:teigen.tgmain:time before volume save: 0:00:00.026645
INFO:teigen.tgmain:time after volume save: 0:00:00.112986
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:59:08.444160
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
880 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:42.670623
INFO:teigen.tgmain:time before volume generate: 0:00:00.024286
INFO:teigen.tgmain:time before volume save: 0:00:00.024286
INFO:teigen.tgmain:time after volume save: 0:00:00.129298
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 06:59:53.065134
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
881 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
INFO:teigen.tgmain:time: 0:00:43.154769
INFO:teigen.tgmain:time before volume generate: 0:00:00.031549
INFO:teigen.tgmain:time before volume save: 0:00:00.031549
INFO:teigen.tgmain:time after volume save: 0:00:00.149231
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:00:38.187419
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
882 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:50.470183
INFO:teigen.tgmain:time before volume generate: 0:00:00.023641
INFO:teigen.tgmain:time before volume save: 0:00:00.023641
INFO:teigen.tgmain:time after volume save: 0:00:00.159034
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:01:30.615828
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
883 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:47.664292
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.033947
INFO:teigen.tgmain:time before volume save: 0:00:00.033947
INFO:teigen.tgmain:time after volume save: 0:00:00.174542
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:02:20.298146
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
884 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:48.386396
INFO:teigen.tgmain:time before volume generate: 0:00:00.024446
INFO:teigen.tgmain:time before volume save: 0:00:00.024446
INFO:teigen.tgmain:time after volume save: 0:00:00.157265
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:03:10.630619
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
885 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:00:26.561927
INFO:teigen.tgmain:time before volume generate: 0:00:00.023298
INFO:teigen.tgmain:time before volume save: 0:00:00.023298
INFO:teigen.tgmain:time after volume save: 0:00:00.056192
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:03:39.040909
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
886 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.626332
INFO:teigen.tgmain:time before volume generate: 0:00:00.024121
INFO:teigen.tgmain:time before volume save: 0:00:00.024121
INFO:teigen.tgmain:time after volume save: 0:00:00.056254
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:04:07.499570
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
887 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:28.734651
INFO:teigen.tgmain:time before volume generate: 0:00:00.028975
INFO:teigen.tgmain:time before volume save: 0:00:00.028975
INFO:teigen.tgmain:time after volume save: 0:00:00.077961
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:04:38.175073
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
888 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:28.783904
INFO:teigen.tgmain:time before volume generate: 0:00:00.023923
INFO:teigen.tgmain:time before volume save: 0:00:00.023923
INFO:teigen.tgmain:time after volume save: 0:00:00.067338
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:05:08.795373
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
889 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:28.280383
INFO:teigen.tgmain:time before volume generate: 0:00:00.023521
INFO:teigen.tgmain:time before volume save: 0:00:00.023521
INFO:teigen.tgmain:time after volume save: 0:00:00.067695
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:05:38.908639
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
890 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:32.751511
INFO:teigen.tgmain:time before volume generate: 0:00:00.023401
INFO:teigen.tgmain:time before volume save: 0:00:00.023401
INFO:teigen.tgmain:time after volume save: 0:00:00.085116
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:06:13.553493
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
891 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:33.206626
INFO:teigen.tgmain:time before volume generate: 0:00:00.024568
INFO:teigen.tgmain:time before volume save: 0:00:00.024568
INFO:teigen.tgmain:time after volume save: 0:00:00.089049
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:06:48.740904
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
892 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:37.095100
INFO:teigen.tgmain:time before volume generate: 0:00:00.023602
INFO:teigen.tgmain:time before volume save: 0:00:00.023602
INFO:teigen.tgmain:time after volume save: 0:00:00.106294
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:07:27.738678
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
893 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:35.564865
INFO:teigen.tgmain:time before volume generate: 0:00:00.028597
INFO:teigen.tgmain:time before volume save: 0:00:00.028597
INFO:teigen.tgmain:time after volume save: 0:00:00.110355
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:08:05.171269
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
894 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:00:35.920651
INFO:teigen.tgmain:time before volume generate: 0:00:00.035900
INFO:teigen.tgmain:time before volume save: 0:00:00.035900
INFO:teigen.tgmain:time after volume save: 0:00:00.135323
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:08:43.103823
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
895 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:43.309316
INFO:teigen.tgmain:time before volume generate: 0:00:00.023666
INFO:teigen.tgmain:time before volume save: 0:00:00.023666
INFO:teigen.tgmain:time after volume save: 0:00:00.128077
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:09:28.335027
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
896 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:43.046666
INFO:teigen.tgmain:time before volume generate: 0:00:00.024800
INFO:teigen.tgmain:time before volume save: 0:00:00.024800
INFO:teigen.tgmain:time after volume save: 0:00:00.130723
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:10:13.335788
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
897 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:50.439532
INFO:teigen.tgmain:time before volume generate: 0:00:00.023383
INFO:teigen.tgmain:time before volume save: 0:00:00.023383
INFO:teigen.tgmain:time after volume save: 0:00:00.161203
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:11:05.752553
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
898 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:47.642465
INFO:teigen.tgmain:time before volume generate: 0:00:00.023334
INFO:teigen.tgmain:time before volume save: 0:00:00.023334
INFO:teigen.tgmain:time after volume save: 0:00:00.160912
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:11:55.336266
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
899 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:47.550503
INFO:teigen.tgmain:time before volume generate: 0:00:00.024300
INFO:teigen.tgmain:time before volume save: 0:00:00.024300
INFO:teigen.tgmain:time after volume save: 0:00:00.157225
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:12:44.881531
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
900 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:27.014659
INFO:teigen.tgmain:time before volume generate: 0:00:00.023251
INFO:teigen.tgmain:time before volume save: 0:00:00.023251
INFO:teigen.tgmain:time after volume save: 0:00:00.055708
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:13:13.746154
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
901 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.820768
INFO:teigen.tgmain:time before volume generate: 0:00:00.023334
INFO:teigen.tgmain:time before volume save: 0:00:00.023334
INFO:teigen.tgmain:time after volume save: 0:00:00.055176
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:13:42.396230
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
902 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:28.647936
INFO:teigen.tgmain:time before volume generate: 0:00:00.041733
INFO:teigen.tgmain:time before volume save: 0:00:00.041733
INFO:teigen.tgmain:time after volume save: 0:00:00.107733
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:14:12.912528
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
903 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:00:28.065327
INFO:teigen.tgmain:time before volume generate: 0:00:00.024186
INFO:teigen.tgmain:time before volume save: 0:00:00.024186
INFO:teigen.tgmain:time after volume save: 0:00:00.068604
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:14:42.824650
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
904 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:29.001257
INFO:teigen.tgmain:time before volume generate: 0:00:00.024543
INFO:teigen.tgmain:time before volume save: 0:00:00.024543
INFO:teigen.tgmain:time after volume save: 0:00:00.070804
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:15:13.900283
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
905 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:32.817855
INFO:teigen.tgmain:time before volume generate: 0:00:00.023258
INFO:teigen.tgmain:time before volume save: 0:00:00.023258
INFO:teigen.tgmain:time after volume save: 0:00:00.084111
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:15:48.662485
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
906 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:32.806889
INFO:teigen.tgmain:time before volume generate: 0:00:00.023393
INFO:teigen.tgmain:time before volume save: 0:00:00.023393
INFO:teigen.tgmain:time after volume save: 0:00:00.084072
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:16:23.323242
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
907 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:36.984330
INFO:teigen.tgmain:time before volume generate: 0:00:00.036935
INFO:teigen.tgmain:time before volume save: 0:00:00.036935
INFO:teigen.tgmain:time after volume save: 0:00:00.119839
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:17:02.176253
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
908 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:35.966223
INFO:teigen.tgmain:time before volume generate: 0:00:00.024355
INFO:teigen.tgmain:time before volume save: 0:00:00.024355
INFO:teigen.tgmain:time after volume save: 0:00:00.105771
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:17:40.049649
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
909 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:35.879760
INFO:teigen.tgmain:time before volume generate: 0:00:00.023548
INFO:teigen.tgmain:time before volume save: 0:00:00.023548
INFO:teigen.tgmain:time after volume save: 0:00:00.104973
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:18:17.808055
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
910 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:43.438578
INFO:teigen.tgmain:time before volume generate: 0:00:00.023933
INFO:teigen.tgmain:time before volume save: 0:00:00.023933
INFO:teigen.tgmain:time after volume save: 0:00:00.131531
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:19:03.145109
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
911 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:42.562022
INFO:teigen.tgmain:time before volume generate: 0:00:00.023452
INFO:teigen.tgmain:time before volume save: 0:00:00.023452
INFO:teigen.tgmain:time after volume save: 0:00:00.130045
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:19:47.718294
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
912 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:50.954410
INFO:teigen.tgmain:time before volume generate: 0:00:00.023396
INFO:teigen.tgmain:time before volume save: 0:00:00.023396
INFO:teigen.tgmain:time after volume save: 0:00:00.159063
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:20:40.674119
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
913 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:00:48.455685
INFO:teigen.tgmain:time before volume generate: 0:00:00.023367
INFO:teigen.tgmain:time before volume save: 0:00:00.023367
INFO:teigen.tgmain:time after volume save: 0:00:00.158438
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:21:31.070922
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
914 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:47.756533
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.037164
INFO:teigen.tgmain:time before volume save: 0:00:00.037164
INFO:teigen.tgmain:time after volume save: 0:00:00.193361
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:22:20.891361
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
915 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.915724
INFO:teigen.tgmain:time before volume generate: 0:00:00.024672
INFO:teigen.tgmain:time before volume save: 0:00:00.024672
INFO:teigen.tgmain:time after volume save: 0:00:00.058594
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:22:49.749672
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
916 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:00:26.834462
INFO:teigen.tgmain:time before volume generate: 0:00:00.040040
INFO:teigen.tgmain:time before volume save: 0:00:00.040040
INFO:teigen.tgmain:time after volume save: 0:00:00.086283
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:23:18.450777
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
917 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
INFO:teigen.tgmain:time: 0:00:28.725378
INFO:teigen.tgmain:time before volume generate: 0:00:00.024642
INFO:teigen.tgmain:time before volume save: 0:00:00.024642
INFO:teigen.tgmain:time after volume save: 0:00:00.069791
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:23:49.013137
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
918 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:27.930352
INFO:teigen.tgmain:time before volume generate: 0:00:00.023437
INFO:teigen.tgmain:time before volume save: 0:00:00.023437
INFO:teigen.tgmain:time after volume save: 0:00:00.067391
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:24:18.787219
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
919 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:28.431128
INFO:teigen.tgmain:time before volume generate: 0:00:00.024994
INFO:teigen.tgmain:time before volume save: 0:00:00.024994
INFO:teigen.tgmain:time after volume save: 0:00:00.075933
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:24:49.172983
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
920 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:33.416751
INFO:teigen.tgmain:time before volume generate: 0:00:00.023473
INFO:teigen.tgmain:time before volume save: 0:00:00.023473
INFO:teigen.tgmain:time after volume save: 0:00:00.084191
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:25:24.492103
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
921 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:33.082108
INFO:teigen.tgmain:time before volume generate: 0:00:00.023256
INFO:teigen.tgmain:time before volume save: 0:00:00.023256
INFO:teigen.tgmain:time after volume save: 0:00:00.086564
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:25:59.444795
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
922 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:36.889559
INFO:teigen.tgmain:time before volume generate: 0:00:00.024026
INFO:teigen.tgmain:time before volume save: 0:00:00.024026
INFO:teigen.tgmain:time after volume save: 0:00:00.107162
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:26:38.281788
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
923 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:36.388739
INFO:teigen.tgmain:time before volume generate: 0:00:00.024611
INFO:teigen.tgmain:time before volume save: 0:00:00.024611
INFO:teigen.tgmain:time after volume save: 0:00:00.106243
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:27:16.535603
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
924 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:35.832458
INFO:teigen.tgmain:time before volume generate: 0:00:00.024202
INFO:teigen.tgmain:time before volume save: 0:00:00.024202
INFO:teigen.tgmain:time after volume save: 0:00:00.106916
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:27:54.286907
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
925 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
INFO:teigen.tgmain:time: 0:00:42.691522
INFO:teigen.tgmain:time before volume generate: 0:00:00.023808
INFO:teigen.tgmain:time before volume save: 0:00:00.023808
INFO:teigen.tgmain:time after volume save: 0:00:00.128748
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:28:38.954825
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
926 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:43.204020
INFO:teigen.tgmain:time before volume generate: 0:00:00.023481
INFO:teigen.tgmain:time before volume save: 0:00:00.023481
INFO:teigen.tgmain:time after volume save: 0:00:00.128803
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:29:24.069203
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
927 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:50.101684
INFO:teigen.tgmain:time before volume generate: 0:00:00.023651
INFO:teigen.tgmain:time before volume save: 0:00:00.023651
INFO:teigen.tgmain:time after volume save: 0:00:00.171167
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:30:16.152177
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
928 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:48.515584
INFO:teigen.tgmain:time before volume generate: 0:00:00.024325
INFO:teigen.tgmain:time before volume save: 0:00:00.024325
INFO:teigen.tgmain:time after volume save: 0:00:00.159832
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:31:06.626058
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
929 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:47.556173
INFO:teigen.tgmain:time before volume generate: 0:00:00.023781
INFO:teigen.tgmain:time before volume save: 0:00:00.023781
INFO:teigen.tgmain:time after volume save: 0:00:00.159957
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:31:56.118951
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
930 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:26.902831
INFO:teigen.tgmain:time before volume generate: 0:00:00.023241
INFO:teigen.tgmain:time before volume save: 0:00:00.023241
INFO:teigen.tgmain:time after volume save: 0:00:00.056297
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:32:35.572087
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
931 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:27.341070
INFO:teigen.tgmain:time before volume generate: 0:00:00.027173
INFO:teigen.tgmain:time before volume save: 0:00:00.027173
INFO:teigen.tgmain:time after volume save: 0:00:00.060333
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:33:04.909873
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
932 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:28.878884
INFO:teigen.tgmain:time before volume generate: 0:00:00.036362
INFO:teigen.tgmain:time before volume save: 0:00:00.036362
INFO:teigen.tgmain:time after volume save: 0:00:00.096321
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:33:35.815221
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
933 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:27.979841
INFO:teigen.tgmain:time before volume generate: 0:00:00.023028
INFO:teigen.tgmain:time before volume save: 0:00:00.023028
INFO:teigen.tgmain:time after volume save: 0:00:00.066437
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:34:05.639203
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
934 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 15
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:28.521034
INFO:teigen.tgmain:time before volume generate: 0:00:00.028043
INFO:teigen.tgmain:time before volume save: 0:00:00.028043
INFO:teigen.tgmain:time after volume save: 0:00:00.075264
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:34:36.003493
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
935 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:34.797398
INFO:teigen.tgmain:time before volume generate: 0:00:00.030313
INFO:teigen.tgmain:time before volume save: 0:00:00.030313
INFO:teigen.tgmain:time after volume save: 0:00:00.098344
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:35:12.814787
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
936 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:33.764797
INFO:teigen.tgmain:time before volume generate: 0:00:00.024437
INFO:teigen.tgmain:time before volume save: 0:00:00.024437
INFO:teigen.tgmain:time after volume save: 0:00:00.085451
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:35:48.429503
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
937 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:37.174966
INFO:teigen.tgmain:time before volume generate: 0:00:00.023423
INFO:teigen.tgmain:time before volume save: 0:00:00.023423
INFO:teigen.tgmain:time after volume save: 0:00:00.106025
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:36:27.465880
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
938 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:37.162819
INFO:teigen.tgmain:time before volume generate: 0:00:00.023460
INFO:teigen.tgmain:time before volume save: 0:00:00.023460
INFO:teigen.tgmain:time after volume save: 0:00:00.104840
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:37:06.519580
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
939 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 25
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:36.138060
INFO:teigen.tgmain:time before volume generate: 0:00:00.023454
INFO:teigen.tgmain:time before volume save: 0:00:00.023454
INFO:teigen.tgmain:time after volume save: 0:00:00.104926
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:37:44.534331
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
940 / 945
element number cylinder surface
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:43.114652
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.038739
INFO:teigen.tgmain:time before volume save: 0:00:00.038739
INFO:teigen.tgmain:time after volume save: 0:00:00.168296
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:38:29.606409
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
941 / 945
element number cylinder volume
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:43.542123
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.039383
INFO:teigen.tgmain:time before volume save: 0:00:00.039383
INFO:teigen.tgmain:time after volume save: 0:00:00.170180
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:39:15.123008
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
942 / 945
element number cylinder surface + sphere error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:50.775898
INFO:teigen.tgmain:time before volume generate: 0:00:00.023616
INFO:teigen.tgmain:time before volume save: 0:00:00.023616
INFO:teigen.tgmain:time after volume save: 0:00:00.161159
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:40:07.913660
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
943 / 945
element number cylinder surface + sphere error + join error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:49.341892
INFO:teigen.tgmain:time before volume generate: 0:00:00.025745
INFO:teigen.tgmain:time before volume save: 0:00:00.025745
INFO:teigen.tgmain:time after volume save: 0:00:00.170941
step1 finished
INFO:teigen.tgmain:step1_init_datetime2017-10-13 07:40:59.216838
INFO:teigen.generators.unconnected_cylinders:cylynder generator running
step2 finished
944 / 945
element number cylinder volume + sphere error + join error
rng 110, r 5.0, l 10, res 35
INFO:teigen.generators.unconnected_cylinders:{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
INFO:teigen.tgmain:generating vtk for surface and volume compensated objects
{'collision': 4977, 'radius_minimum': 0, 'radius_bigger_than_areasize': 0, 'length_bigger_than_areasize': 0, 'radius_maximum': 0}
before vtk generation
progess: 0.0
progess: 0.0666666666667
progess: 0.133333333333
progess: 0.2
progess: 0.266666666667
progess: 0.333333333333
progess: 0.4
progess: 0.466666666667
progess: 0.533333333333
progess: 0.6
progess: 0.666666666667
progess: 0.733333333333
progess: 0.8
progess: 0.866666666667
progess: 0.933333333333
generate vtk finished
INFO:teigen.tgmain:time: 0:00:48.096521
step1 finished
INFO:teigen.tgmain:time before volume generate: 0:00:00.024307
INFO:teigen.tgmain:time before volume save: 0:00:00.024307
INFO:teigen.tgmain:time after volume save: 0:00:00.206679
step2 finished
In [50]:
configs
Out[50]:
[OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 3),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 10),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 21),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'short',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'short'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 3),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 10),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 21),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'short',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'short'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 3),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 10),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 21),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'short',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'short'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 5),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 5),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 5),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 6),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 6),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
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('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
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'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
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{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
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'run_label': 'tube length'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
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OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
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('radius_distribution_normal',
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('radius_distribution_fixed', False),
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('length_distribution_standard_deviation',
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('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
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('volume_fraction', 0.1),
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('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
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('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
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'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
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'run_label': 'tube length'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
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OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
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('radius_distribution_normal',
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('random_generator_seed', 0)])),
('Unconnected tubes',
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('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
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('length_distribution_mean', 7),
('length_distribution_standard_deviation',
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('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
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('volume_fraction', 0.1),
('maximum_1000_iteration_number',
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('random_generator_seed', 101),
('last_element_can_be_smaller',
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('tube_shape', True)]))])),
('generator_id', 3),
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('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
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('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
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('negative', False),
('background_intensity', 20)])),
('areasampling',
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'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
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'run_label': 'tube length'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
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('radius_distribution_normal',
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('random_generator_seed', 0)])),
('Unconnected tubes',
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('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
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('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
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('length_distribution_mean', 7),
('length_distribution_standard_deviation',
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('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
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('volume_fraction', 0.1),
('maximum_1000_iteration_number',
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('random_generator_seed', 102),
('last_element_can_be_smaller',
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('tube_shape', True)]))])),
('generator_id', 3),
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('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
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('background_intensity', 20)])),
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'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
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('random_generator_seed', 0)])),
('Unconnected tubes',
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('radius_distribution_standard_deviation',
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('length_distribution_mean', 7),
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('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
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('volume_fraction', 0.1),
('maximum_1000_iteration_number',
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('random_generator_seed', 103),
('last_element_can_be_smaller',
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('tube_shape', True)]))])),
('generator_id', 3),
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('background_intensity', 20)])),
('areasampling',
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'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
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('random_generator_seed', 0)])),
('Unconnected tubes',
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('radius_distribution_standard_deviation',
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('length_distribution_mean', 8),
('length_distribution_standard_deviation',
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('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
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('volume_fraction', 0.1),
('maximum_1000_iteration_number',
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('last_element_can_be_smaller',
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('tube_shape', True)]))])),
('generator_id', 3),
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('noise_lambda1', 1.0),
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('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
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'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
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('Unconnected tubes',
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('radius_distribution_standard_deviation',
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('orientation_alpha_rad', 0.0),
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('volume_fraction', 0.1),
('maximum_1000_iteration_number',
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('intensity_profile_intensity',
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('areasampling',
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('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
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('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
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('radius_distribution_mean', 5.0),
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('Gensei', OrderedDict([('n_objects', 10)])),
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('Unconnected tubes',
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('radius_distribution_standard_deviation',
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('length_distribution_mean', 8),
('length_distribution_standard_deviation',
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('orientation_alpha_rad', 0.0),
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('volume_fraction', 0.1),
('maximum_1000_iteration_number',
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('random_generator_seed', 103),
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('generator_id', 3),
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('intensity_profile_intensity',
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('background_intensity', 20)])),
('areasampling',
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'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length'}),
('measurement',
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OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 10),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 10),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 10),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 12),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 12),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 12),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 14),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 14),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
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('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
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('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
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('radius_distribution_normal',
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('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
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('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 14),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
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('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
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('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
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('radius_distribution_normal',
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('radius_distribution_minimum', 2.0),
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('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
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('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 16),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
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('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
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('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
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True),
('radius_distribution_normal',
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('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
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('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 16),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
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('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
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('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
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('radius_distribution_normal',
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('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
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('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 16),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
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('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
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('radius_distribution_normal',
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('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
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('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
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('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
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('radius_distribution_normal',
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('radius_distribution_minimum', 2.0),
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('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
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('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
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('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
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('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
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('radius_distribution_normal',
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('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
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('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
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True),
('radius_distribution_normal',
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('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
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('radius_distribution_uniform',
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('radius_distribution_normal',
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('radius_distribution_minimum', 2.0),
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('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 24),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
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True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
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('radius_distribution_mean', 5.0),
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('radius_distribution_standard_deviation',
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('random_generator_seed', 0)])),
('Unconnected tubes',
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('radius_distribution_maximum',
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('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
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('length_distribution_mean', 24),
('length_distribution_standard_deviation',
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('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
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('random_generator_seed', 102),
('last_element_can_be_smaller',
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('tube_shape', True)]))])),
('generator_id', 3),
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OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
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('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
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True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
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('radius_distribution_mean', 5.0),
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('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
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('random_generator_seed', 0)])),
('Unconnected tubes',
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('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
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('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
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('length_distribution_mean', 24),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
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('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
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'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
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True),
('radius_distribution_normal',
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('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
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('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
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('radius_distribution_mean', 5.0),
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('random_generator_seed', 0)])),
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('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
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('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
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('length_distribution_mean', 28),
('length_distribution_standard_deviation',
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('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
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('volume_fraction', 0.1),
('maximum_1000_iteration_number',
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('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
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('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
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('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
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('negative', False),
('background_intensity', 20)])),
('areasampling',
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'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
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('radius_distribution_maximum',
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('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
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('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
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('radius_distribution_normal', True),
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('radius_distribution_minimum', 0.1),
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('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
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('length_distribution_mean', 28),
('length_distribution_standard_deviation',
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('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
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('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
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OrderedDict([('gaussian_blur', True),
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('add_noise', True),
('limit_negative_intensities', True),
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('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
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('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
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('negative', False),
('background_intensity', 20)])),
('areasampling',
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'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
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('radius_distribution_normal',
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('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
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('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
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5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
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('radius_distribution_uniform',
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('radius_distribution_normal', True),
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('radius_distribution_minimum', 0.1),
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('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
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('length_distribution_mean', 28),
('length_distribution_standard_deviation',
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('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
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('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
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('add_noise', True),
('limit_negative_intensities', True),
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('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
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('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
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('negative', False),
('background_intensity', 20)])),
('areasampling',
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'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
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('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
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('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
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('Gensei', OrderedDict([('n_objects', 10)])),
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('Unconnected tubes',
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('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
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('length_distribution_mean', 32),
('length_distribution_standard_deviation',
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('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
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('random_generator_seed', 101),
('last_element_can_be_smaller',
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('tube_shape', True)]))])),
('generator_id', 3),
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('gaussian_filter_sigma_mm', 1.0),
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('noise_lambda1', 1.0),
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('measurement_resolution', 20),
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('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
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('negative', False),
('background_intensity', 20)])),
('areasampling',
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'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
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('radius_distribution_normal',
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('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
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('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
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('Gensei', OrderedDict([('n_objects', 10)])),
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('radius_distribution_mean', 5.0),
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('Unconnected tubes',
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('radius_distribution_minimum', 0.1),
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('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
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('length_distribution_mean', 32),
('length_distribution_standard_deviation',
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('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
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('random_generator_seed', 102),
('last_element_can_be_smaller',
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('tube_shape', True)]))])),
('generator_id', 3),
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OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
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('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
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('radius_distribution_normal',
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('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
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('radius_distribution_standard_deviation',
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('random_generator_seed', 0)])),
('Unconnected tubes',
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('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
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('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
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('length_distribution_mean', 32),
('length_distribution_standard_deviation',
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('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
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('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
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OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
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('radius_distribution_normal',
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('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
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('radius_distribution_standard_deviation',
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('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
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('radius_distribution_normal', True),
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('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
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('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
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('length_distribution_mean', 40),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
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('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
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OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
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'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
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('radius_distribution_normal',
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('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
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('radius_distribution_mean', 5.0),
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('Continuous tubes',
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('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
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('random_generator_seed', 0)])),
('Unconnected tubes',
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('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 40),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
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('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
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'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
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('radius_distribution_normal',
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('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
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('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
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('Gensei', OrderedDict([('n_objects', 10)])),
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('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
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('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 40),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
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('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
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('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
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('negative', False),
('background_intensity', 20)])),
('areasampling',
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'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
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('radius_distribution_normal',
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('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
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('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
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('radius_distribution_mean', 5.0),
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('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
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('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
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('length_distribution_mean', 48),
('length_distribution_standard_deviation',
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('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
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('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
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OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
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('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
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('negative', False),
('background_intensity', 20)])),
('areasampling',
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'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
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('radius_distribution_normal',
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('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
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('radius_distribution_mean', 5.0),
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('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
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('radius_distribution_standard_deviation',
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('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
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('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
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('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
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('length_distribution_mean', 48),
('length_distribution_standard_deviation',
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('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
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('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
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('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
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('negative', False),
('background_intensity', 20)])),
('areasampling',
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'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
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('radius_distribution_normal',
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('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
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('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
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('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
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('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
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('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
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('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
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('length_distribution_mean', 48),
('length_distribution_standard_deviation',
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('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
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('random_generator_seed', 103),
('last_element_can_be_smaller',
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('tube_shape', True)]))])),
('generator_id', 3),
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OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
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('noise_lambda1', 1.0),
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('measurement_resolution', 20),
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('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
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('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
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'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length'}),
('measurement',
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OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
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('radius_distribution_normal',
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('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
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('Gensei', OrderedDict([('n_objects', 10)])),
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('Unconnected tubes',
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('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
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('length_distribution_mean', 5),
('length_distribution_standard_deviation',
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('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length 2',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length 2'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
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('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
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('radius_distribution_mean', 5.0),
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('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
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('radius_distribution_uniform',
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('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
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('length_distribution_mean', 5),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
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('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
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OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length 2',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length 2'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
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('radius_distribution_mean', 5.0),
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('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
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('radius_distribution_normal',
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('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
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('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 5),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
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('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length 2',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length 2'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
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('random_generator_seed', 0)])),
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('Continuous tubes',
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('radius_distribution_normal',
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('radius_distribution_maximum',
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('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
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('length_distribution_mean', 10),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
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('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
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('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
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'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length 2',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length 2'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
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('radius_distribution_normal',
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('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
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('radius_distribution_mean', 5.0),
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('Gensei', OrderedDict([('n_objects', 10)])),
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('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
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('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
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('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 10),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
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'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length 2',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length 2'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
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('radius_distribution_normal',
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('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
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('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
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('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
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('radius_distribution_minimum', 2.0),
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('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
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('length_distribution_mean', 10),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
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('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length 2',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length 2'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
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('radius_distribution_normal',
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('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
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('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
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('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
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('random_generator_seed', 0)])),
('Unconnected tubes',
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('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
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('length_distribution_mean', 15),
('length_distribution_standard_deviation',
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('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
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('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length 2',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length 2'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
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('radius_distribution_normal',
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('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
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('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
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('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
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('random_generator_seed', 0)])),
('Unconnected tubes',
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('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
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('length_distribution_mean', 15),
('length_distribution_standard_deviation',
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('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
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('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
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('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length 2',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length 2'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
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('radius_distribution_normal',
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('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
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('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 15),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length 2',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length 2'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length 2',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length 2'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length 2',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length 2'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length 2',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length 2'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 25),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length 2',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length 2'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 25),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length 2',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length 2'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
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('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 25),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length 2',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length 2'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
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('radius_distribution_normal',
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('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
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('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
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('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 30),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length 2',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length 2'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
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('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
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('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
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('Continuous tubes',
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('radius_distribution_normal',
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('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
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('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 30),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length 2',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length 2'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
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('radius_distribution_mean', 5.0),
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('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
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('radius_distribution_uniform',
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('radius_distribution_normal',
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('radius_distribution_minimum', 2.0),
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('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 30),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length 2',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length 2'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
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('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
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('radius_distribution_uniform',
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('radius_distribution_normal',
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('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 35),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length 2',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length 2'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
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('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
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('radius_distribution_uniform',
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('radius_distribution_normal',
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('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
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('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 35),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length 2',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length 2'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
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('radius_distribution_normal',
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('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
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('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
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('radius_distribution_normal',
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('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
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('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 35),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length 2',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length 2'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
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('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
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('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
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('radius_distribution_normal',
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('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
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('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 40),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length 2',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length 2'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
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('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
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('radius_distribution_normal',
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('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
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('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
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('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
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('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 40),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length 2',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length 2'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
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('radius_distribution_normal',
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('radius_distribution_minimum', 2.0),
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('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
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('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
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('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 40),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length 2',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length 2'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 45),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length 2',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length 2'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 45),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length 2',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length 2'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 0.1),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
1.0),
('length_distribution_mean', 45),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'tube length 2',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'tube length 2'}),
('measurement',
{'polygon_radius_selection_method': 'best',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 6),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 6),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method circumscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'circumscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 6),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 6),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 6),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method average',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'average',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 7),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 7),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method circumscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'circumscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 7),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 7),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 7),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method average',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'average',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 8),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 8),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method circumscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'circumscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 8),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 8),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 8),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method average',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'average',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 10),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 10),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method circumscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'circumscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 10),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 10),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 10),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method average',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'average',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 12),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 12),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method circumscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'circumscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 12),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 12),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 12),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method average',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'average',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 16),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 16),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method circumscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'circumscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 16),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 16),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 16),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method average',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'average',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method circumscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'circumscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 20),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method average',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'average',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 25),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 25),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method circumscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'circumscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 25),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 25),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 25),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method average',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'average',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 30),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 30),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method circumscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'circumscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 30),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 30),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 30),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method average',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'average',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 40),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 40),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method circumscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'circumscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 40),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 40),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 40),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method average',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'average',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 50),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 50),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method circumscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'circumscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 50),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 50),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 10),
('radius_distribution_uniform',
False),
('radius_distribution_normal',
False),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 3.0),
('radius_distribution_maximum',
30.0),
('radius_distribution_mean', 20),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 20),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 3),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 50),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method average',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method'}),
('measurement',
{'polygon_radius_selection_method': 'average',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 5),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 5),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 5),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 5),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 5),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 5),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 5),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 5),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 5),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 5),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
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('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
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('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
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('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 5),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
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('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
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('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 5),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 5),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 5),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 5),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
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('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 5),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
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('radius_distribution_normal',
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('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
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('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 5),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 5),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 5),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 5),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 5),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 5),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 5),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 5),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 5),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
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('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
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('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 6),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
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('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 6),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 6),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 6),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 6),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
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('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 6),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 6),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 6),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 6),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 6),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 6),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 6),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 6),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 6),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 6),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 6),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 6),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 6),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 6),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 6),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 6),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 6),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 6),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 6),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 6),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 7),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 7),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 7),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 7),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 7),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 7),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 7),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 7),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 7),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 7),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 7),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 7),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 7),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 7),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 7),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 7),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 7),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 7),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 7),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 7),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 7),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 7),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 7),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 7),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 7),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 8),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 8),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 8),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 8),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 8),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 8),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 8),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 8),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 8),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 8),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 8),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 8),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 8),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 8),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 8),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 8),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 8),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 8),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 8),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 8),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 8),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 8),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 8),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 8),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 8),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 10),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 10),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 10),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 10),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 10),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 10),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 10),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 10),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 10),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 10),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 10),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 10),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 10),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 10),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 10),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 10),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 10),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 10),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 10),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 10),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 10),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 10),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 10),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 10),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 10),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 12),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 12),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 12),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 12),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 12),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 12),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 12),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 12),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 12),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 12),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 12),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 12),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 12),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 12),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 12),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 12),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 12),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 12),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 12),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 12),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 12),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 12),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 12),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 12),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 12),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 14),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 14),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 14),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 14),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 14),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 14),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 14),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 14),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 14),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 14),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 14),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 14),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 14),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 14),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 14),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 14),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 14),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 14),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 14),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 14),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 14),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 14),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 14),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 14),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 14),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 17),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 17),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 17),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 17),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 17),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 17),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 17),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 17),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 17),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 17),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 17),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 17),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 17),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 17),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 17),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 17),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 17),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 17),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 17),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 17),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 17),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 17),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 17),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 17),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 17),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 19),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 19),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 19),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 19),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 19),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 19),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 19),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 19),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 19),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 19),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 19),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 19),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 19),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 19),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 19),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 19),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 19),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 19),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 19),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 19),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 19),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 19),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 19),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 19),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 19),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 42),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 42),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 42),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 42),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 42),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 42),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 42),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 42),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 42),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 42),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 42),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 42),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 42),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 42),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 42),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 42),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 42),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 42),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 42),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 42),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 42),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 42),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 42),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 42),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 42),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 44),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 44),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 44),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 44),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 44),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 44),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 44),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 44),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 44),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 44),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 44),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 44),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 44),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 44),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 44),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 44),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 44),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 44),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 44),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 44),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 44),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 44),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 44),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 44),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 44),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 46),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 46),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 46),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 46),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 46),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 46),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 46),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 46),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 46),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 46),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 46),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 46),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 46),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 46),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 46),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 46),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 46),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 46),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 46),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 46),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 46),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 46),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 46),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 46),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 46),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 48),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 48),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 48),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 48),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 48),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 48),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 48),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 48),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 48),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 48),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 48),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 48),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 48),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 48),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 48),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 48),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 48),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 48),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 48),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 48),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 48),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 48),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 48),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 48),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 48),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 50),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 50),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 50),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 50),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 50),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 50),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 50),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 50),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 50),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 50),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 50),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 50),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 50),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 50),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 50),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 50),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 50),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 50),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 50),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 50),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 50),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 50),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 50),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 50),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 50),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 53),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 53),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 53),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 53),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 53),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 53),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 53),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 53),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 53),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 53),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 53),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 53),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 53),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 53),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 53),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 53),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 53),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 53),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 53),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 53),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 53),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 53),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 53),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 53),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 53),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 58),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 58),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 58),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 58),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 58),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 58),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 58),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 58),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 58),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 58),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 58),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 58),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 58),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 58),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 58),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 58),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 58),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 58),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 58),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 58),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 58),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 58),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 58),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 58),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 58),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 60),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 60),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 60),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 60),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 101),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 60),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 60),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 60),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 60),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 60),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 102),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 60),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 60),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 60),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 60),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 60),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 103),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 60),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 60),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 60),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 60),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 60),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder volume + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder volume + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 104),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 60),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere cylinder surface + sphere error',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'cylinder surface + sphere error',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Gensei', OrderedDict([('n_objects', 10)])),
('Continuous tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_distribution_mean', 5.0),
('radius_distribution_standard_deviation',
5.0),
('random_generator_seed', 0)])),
('Unconnected tubes',
OrderedDict([('element_number', 1),
('radius_distribution_uniform',
False),
('radius_distribution_normal', True),
('radius_distribution_fixed', True),
('radius_distribution_minimum', 1.0),
('radius_distribution_maximum', 3.0),
('radius_distribution_mean', 1.0),
('radius_distribution_standard_deviation',
0.1),
('length_distribution_mean', 0.0),
('length_distribution_standard_deviation',
0.1),
('orientation_anisotropic', False),
('orientation_alpha_rad', 0.0),
('orientation_beta_rad', 0.0),
('orientation_variance_rad', 0.1),
('allow_overlap', False),
('volume_fraction', 0.1),
('maximum_1000_iteration_number',
10),
('random_generator_seed', 105),
('last_element_can_be_smaller',
False),
('tube_shape', True)]))])),
('generator_id', 'Unconnected tubes'),
('postprocessing',
OrderedDict([('gaussian_blur', True),
('gaussian_filter_sigma_mm', 1.0),
('add_noise', True),
('limit_negative_intensities', True),
('noise_rng_seed', 0),
('noise_exponent', 0.0),
('noise_lambda0', 0.02),
('noise_lambda1', 1.0),
('noise_std', 40.0),
('noise_mean', 30.0),
('measurement_resolution', 60),
('output_dtype', 'uint8'),
('intensity_profile_radius', [0.4, 0.7, 1.0, 1.3]),
('intensity_profile_intensity',
[195, 190, 200, 30]),
('negative', False),
('background_intensity', 20)])),
('areasampling',
{'areasize_mm': [10.0, 10.0, 10.0],
'areasize_px': [50, 50, 50],
'voxelsize_mm': [0.2, 0.2, 0.2]}),
('filepattern', '~/teigen_data/{seriesn:03d}/data{:06d}.jpg'),
('filepattern_abspath', None),
('appearance',
{'force_rewrite': False,
'noise_preview': False,
'show_aposteriori_surface': True,
'skip_volume_generation': True,
'surface_3d_preview': False}),
('output',
{'aposteriori_measurement': False,
'aposteriori_measurement_multiplier': 1.0,
'note': 'compensation method 1 sphere inscribed',
'one_row_filename': '~/teigen_data/output_rows.csv',
'run_label': 'compensation method 1 sphere'}),
('measurement',
{'polygon_radius_selection_method': 'inscribed',
'tube_shape': True})]),
OrderedDict([('generators',
OrderedDict([('Voronoi tubes',
OrderedDict([('element_number', 30),
('radius_distribution_uniform',
True),
('radius_distribution_normal',
False),
('radius_distribution_fixed', False),
('radius_distribution_minimum', 2.0),
('radius_distribution_maximum',
10.0),
('radius_di