In [1]:
import pandas as pd
import pysolr
import requests
from tqdm.notebook import tqdm
In [2]:
df = pd.read_csv('metadata.csv')
In [3]:
df
Out[3]:
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American Heart Journal
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American Journal of Ophthalmology
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Romano, Maria C.; Straub, Kenneth M.; Yodis, L...
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Monoclonal antibodies identify multiple epitop...
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Biochemical Pharmacology
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els-covid
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Masahiko, Matsumoto; Fox, John G.; Pou-Hsiung,...
Biochemical Pharmacology
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NaN
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Antitumor activity and biochemical effects of ...
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els-covid
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Biochemical Pharmacology
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Broad-spectrum antiviral and cytocidal activit...
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els-covid
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els-covid
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Paraneoplastic limbic encephalitis: Neuropsych...
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NaN
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els-covid
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Regulation of astrocyte proliferation by prost...
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els-covid
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Brain Research
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Selective induction of interleukin-6 in mouse ...
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els-covid
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British Journal of Diseases of the Chest
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els-covid
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Murdoch, D.B.
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Vogel, C.J.
British Veterinary Journal
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Animal health 1984—Report of the chief veterin...
10.1016/0007-1935(86)90082-5
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British Veterinary Journal
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Laboratory readiness and response for novel co...
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PMC7029448
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Reusken, Chantal B.E.M.; Broberg, Eeva K.; Haa...
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NaN
True
custom_license
44219
04bc03c90437934a75fc6fdc228817234ef84c3a
PMC
A New Immunosuppressive Molecule Emodin Induce...
10.3389/fimmu.2017.01519
PMC5682309
29167674.0
cc-by
Due to vigorous alloimmunity, an allograft is ...
2017 Nov 8
Qiu, Feifei; Liu, Huazhen; Liang, Chun-Ling; N...
Front Immunol
NaN
NaN
True
comm_use_subset
44220 rows × 15 columns
In [4]:
json_docs = []
doc_id = 0
for index, row in tqdm(df.iterrows()):
json_doc = {}
json_doc["text"] = str(row['title']) + ' ' + str(row['abstract'])
json_doc["id"] = str(doc_id)
doc_id = doc_id +1
json_docs.append(json_doc)
In [6]:
core_name = 'covid19'
# Create a client instance. The timeout and authentication options are not required.
solr = pysolr.Solr('http://localhost:8983/solr/'+core_name, always_commit=True, timeout=10)
In [7]:
for doc in tqdm(json_docs):
# How you'd index data.
solr.add([
doc
])
In [ ]:
Content source: memex-explorer/GeoParser
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