In [1]:

    

import SimpleITK as sitk
from matplotlib import pyplot as plt, cm
%matplotlib inline


    

In [2]:

    

INPUT_DIRECTORY = "/Volumes/homes/users/anthony.reina/dicom" \
                        "/Lung CT/stage1/00cba091fa4ad62cc3200a657aeb957e/" 
    
INPUT_FILENAME = "0a291d1b12b86213d813e3796f14b329.dcm"


    

In [4]:

    

itk_img = sitk.ReadImage(INPUT_DIRECTORY + INPUT_FILENAME)


    

In [5]:

    

img_array = sitk.GetArrayFromImage(itk_img)
print("Img array: ", img_array.shape)


    

    




('Img array: ', (1, 512, 512))

In [6]:

    

z=0
slice = sitk.GetArrayViewFromImage(itk_img)[z,:,:]


    

In [7]:

    

plt.imshow(slice, cmap=cm.bone);


    

In [13]:

    

type(slice[0,0])


    

    
Out[13]:





numpy.int32

In [20]:

    

itk_img.GetDirection()


    

    
Out[20]:





(1.0, 0.0, 0.0, 0.0, 1.0, 0.0, 0.0, 0.0, 1.0)

In [ ]: