In [1]:
from simtk.openmm.app import *
from simtk.openmm import *
from simtk.unit import *
from sys import stdout
In [2]:
forcefield = ForceField('amber99sb.xml', 'amber99_obc.xml')
pdb = PDBFile("/Users/weilu/Research/server/dec_2019/Test_Openmm_Implicit/6gk3_pqr_chainA.pdb")
modeller = Modeller(pdb.topology, pdb.positions)
modeller.addHydrogens(pH=7.0)
Out[2]:
[None,
None,
None,
None,
None,
None,
None,
None,
None,
'HID',
None,
None,
None,
None,
None,
None,
None,
None,
None,
None,
None,
None,
None,
None,
None,
None,
None,
None,
None,
'HID',
None,
None,
None,
None,
None,
None,
None,
None,
None,
None,
None,
None,
None,
None,
None,
None,
None,
None,
None,
None,
None,
None,
None,
None,
None,
None,
None,
None,
None,
None,
None,
None,
'HID',
None]
In [3]:
system = forcefield.createSystem(modeller.topology, nonbondedMethod=NoCutoff,implicitSolvent=GBn2,constraints=HBonds)
In [5]:
a = modeller.topology
In [40]:
a.getNumResidues()
Out[40]:
64
In [6]:
a.getNumAtoms()
Out[6]:
1040
In [7]:
a.getNumResidues()
Out[7]:
64
In [17]:
b = list(a.atoms())
In [32]:
c = b[1]
In [28]:
c.id
Out[28]:
'5'
In [35]:
modeller.topology.getNumAtoms()
Out[35]:
1040
In [37]:
ca_list = []
for atom in modeller.topology.atoms():
if atom.name == "CA":
ca_list.append(atom.index)
# print(atom.index, atom.name)
In [38]:
Out[38]:
[1,
23,
42,
56,
67,
88,
104,
115,
122,
142,
159,
173,
184,
196,
215,
230,
246,
258,
277,
296,
318,
332,
339,
354,
378,
397,
412,
434,
450,
465,
482,
493,
505,
524,
535,
555,
566,
588,
600,
624,
635,
655,
676,
695,
714,
735,
756,
770,
785,
805,
819,
833,
847,
862,
884,
896,
911,
932,
942,
953,
977,
993,
1007,
1024]
In [25]:
c.element
Out[25]:
<Element carbon>
In [33]:
c.name
Out[33]:
'CA'
In [31]:
b
Out[31]:
[<Atom 0 (N) of chain 0 residue 0 (PHE)>,
<Atom 1 (CA) of chain 0 residue 0 (PHE)>,
<Atom 2 (C) of chain 0 residue 0 (PHE)>,
<Atom 3 (O) of chain 0 residue 0 (PHE)>,
<Atom 4 (H) of chain 0 residue 0 (PHE)>,
<Atom 5 (H2) of chain 0 residue 0 (PHE)>,
<Atom 6 (H3) of chain 0 residue 0 (PHE)>,
<Atom 7 (CB) of chain 0 residue 0 (PHE)>,
<Atom 8 (CG) of chain 0 residue 0 (PHE)>,
<Atom 9 (CZ) of chain 0 residue 0 (PHE)>,
<Atom 10 (CD1) of chain 0 residue 0 (PHE)>,
<Atom 11 (CE1) of chain 0 residue 0 (PHE)>,
<Atom 12 (CD2) of chain 0 residue 0 (PHE)>,
<Atom 13 (CE2) of chain 0 residue 0 (PHE)>,
<Atom 14 (HZ) of chain 0 residue 0 (PHE)>,
<Atom 15 (HA) of chain 0 residue 0 (PHE)>,
<Atom 16 (HE1) of chain 0 residue 0 (PHE)>,
<Atom 17 (HE2) of chain 0 residue 0 (PHE)>,
<Atom 18 (HD2) of chain 0 residue 0 (PHE)>,
<Atom 19 (HD1) of chain 0 residue 0 (PHE)>,
<Atom 20 (HB3) of chain 0 residue 0 (PHE)>,
<Atom 21 (HB2) of chain 0 residue 0 (PHE)>,
<Atom 22 (N) of chain 0 residue 1 (LEU)>,
<Atom 23 (CA) of chain 0 residue 1 (LEU)>,
<Atom 24 (C) of chain 0 residue 1 (LEU)>,
<Atom 25 (O) of chain 0 residue 1 (LEU)>,
<Atom 26 (H) of chain 0 residue 1 (LEU)>,
<Atom 27 (CB) of chain 0 residue 1 (LEU)>,
<Atom 28 (CG) of chain 0 residue 1 (LEU)>,
<Atom 29 (CD1) of chain 0 residue 1 (LEU)>,
<Atom 30 (CD2) of chain 0 residue 1 (LEU)>,
<Atom 31 (HD22) of chain 0 residue 1 (LEU)>,
<Atom 32 (HD23) of chain 0 residue 1 (LEU)>,
<Atom 33 (HD21) of chain 0 residue 1 (LEU)>,
<Atom 34 (HD13) of chain 0 residue 1 (LEU)>,
<Atom 35 (HD12) of chain 0 residue 1 (LEU)>,
<Atom 36 (HD11) of chain 0 residue 1 (LEU)>,
<Atom 37 (HA) of chain 0 residue 1 (LEU)>,
<Atom 38 (HG) of chain 0 residue 1 (LEU)>,
<Atom 39 (HB3) of chain 0 residue 1 (LEU)>,
<Atom 40 (HB2) of chain 0 residue 1 (LEU)>,
<Atom 41 (N) of chain 0 residue 2 (ASN)>,
<Atom 42 (CA) of chain 0 residue 2 (ASN)>,
<Atom 43 (C) of chain 0 residue 2 (ASN)>,
<Atom 44 (O) of chain 0 residue 2 (ASN)>,
<Atom 45 (H) of chain 0 residue 2 (ASN)>,
<Atom 46 (CB) of chain 0 residue 2 (ASN)>,
<Atom 47 (CG) of chain 0 residue 2 (ASN)>,
<Atom 48 (HA) of chain 0 residue 2 (ASN)>,
<Atom 49 (HB3) of chain 0 residue 2 (ASN)>,
<Atom 50 (HB2) of chain 0 residue 2 (ASN)>,
<Atom 51 (OD1) of chain 0 residue 2 (ASN)>,
<Atom 52 (ND2) of chain 0 residue 2 (ASN)>,
<Atom 53 (HD22) of chain 0 residue 2 (ASN)>,
<Atom 54 (HD21) of chain 0 residue 2 (ASN)>,
<Atom 55 (N) of chain 0 residue 3 (CYS)>,
<Atom 56 (CA) of chain 0 residue 3 (CYS)>,
<Atom 57 (C) of chain 0 residue 3 (CYS)>,
<Atom 58 (O) of chain 0 residue 3 (CYS)>,
<Atom 59 (H) of chain 0 residue 3 (CYS)>,
<Atom 60 (CB) of chain 0 residue 3 (CYS)>,
<Atom 61 (SG) of chain 0 residue 3 (CYS)>,
<Atom 62 (HA) of chain 0 residue 3 (CYS)>,
<Atom 63 (HB3) of chain 0 residue 3 (CYS)>,
<Atom 64 (HB2) of chain 0 residue 3 (CYS)>,
<Atom 65 (HG) of chain 0 residue 3 (CYS)>,
<Atom 66 (N) of chain 0 residue 4 (TYR)>,
<Atom 67 (CA) of chain 0 residue 4 (TYR)>,
<Atom 68 (C) of chain 0 residue 4 (TYR)>,
<Atom 69 (O) of chain 0 residue 4 (TYR)>,
<Atom 70 (H) of chain 0 residue 4 (TYR)>,
<Atom 71 (CB) of chain 0 residue 4 (TYR)>,
<Atom 72 (CG) of chain 0 residue 4 (TYR)>,
<Atom 73 (OH) of chain 0 residue 4 (TYR)>,
<Atom 74 (CZ) of chain 0 residue 4 (TYR)>,
<Atom 75 (CD1) of chain 0 residue 4 (TYR)>,
<Atom 76 (CE1) of chain 0 residue 4 (TYR)>,
<Atom 77 (CD2) of chain 0 residue 4 (TYR)>,
<Atom 78 (CE2) of chain 0 residue 4 (TYR)>,
<Atom 79 (HA) of chain 0 residue 4 (TYR)>,
<Atom 80 (HE1) of chain 0 residue 4 (TYR)>,
<Atom 81 (HE2) of chain 0 residue 4 (TYR)>,
<Atom 82 (HD2) of chain 0 residue 4 (TYR)>,
<Atom 83 (HD1) of chain 0 residue 4 (TYR)>,
<Atom 84 (HB3) of chain 0 residue 4 (TYR)>,
<Atom 85 (HB2) of chain 0 residue 4 (TYR)>,
<Atom 86 (HH) of chain 0 residue 4 (TYR)>,
<Atom 87 (N) of chain 0 residue 5 (VAL)>,
<Atom 88 (CA) of chain 0 residue 5 (VAL)>,
<Atom 89 (C) of chain 0 residue 5 (VAL)>,
<Atom 90 (O) of chain 0 residue 5 (VAL)>,
<Atom 91 (H) of chain 0 residue 5 (VAL)>,
<Atom 92 (CB) of chain 0 residue 5 (VAL)>,
<Atom 93 (CG1) of chain 0 residue 5 (VAL)>,
<Atom 94 (CG2) of chain 0 residue 5 (VAL)>,
<Atom 95 (HA) of chain 0 residue 5 (VAL)>,
<Atom 96 (HG11) of chain 0 residue 5 (VAL)>,
<Atom 97 (HG21) of chain 0 residue 5 (VAL)>,
<Atom 98 (HB) of chain 0 residue 5 (VAL)>,
<Atom 99 (HG12) of chain 0 residue 5 (VAL)>,
<Atom 100 (HG13) of chain 0 residue 5 (VAL)>,
<Atom 101 (HG23) of chain 0 residue 5 (VAL)>,
<Atom 102 (HG22) of chain 0 residue 5 (VAL)>,
<Atom 103 (N) of chain 0 residue 6 (SER)>,
<Atom 104 (CA) of chain 0 residue 6 (SER)>,
<Atom 105 (C) of chain 0 residue 6 (SER)>,
<Atom 106 (O) of chain 0 residue 6 (SER)>,
<Atom 107 (H) of chain 0 residue 6 (SER)>,
<Atom 108 (CB) of chain 0 residue 6 (SER)>,
<Atom 109 (OG) of chain 0 residue 6 (SER)>,
<Atom 110 (HA) of chain 0 residue 6 (SER)>,
<Atom 111 (HB3) of chain 0 residue 6 (SER)>,
<Atom 112 (HB2) of chain 0 residue 6 (SER)>,
<Atom 113 (HG) of chain 0 residue 6 (SER)>,
<Atom 114 (N) of chain 0 residue 7 (GLY)>,
<Atom 115 (CA) of chain 0 residue 7 (GLY)>,
<Atom 116 (C) of chain 0 residue 7 (GLY)>,
<Atom 117 (O) of chain 0 residue 7 (GLY)>,
<Atom 118 (H) of chain 0 residue 7 (GLY)>,
<Atom 119 (HA2) of chain 0 residue 7 (GLY)>,
<Atom 120 (HA3) of chain 0 residue 7 (GLY)>,
<Atom 121 (N) of chain 0 residue 8 (PHE)>,
<Atom 122 (CA) of chain 0 residue 8 (PHE)>,
<Atom 123 (C) of chain 0 residue 8 (PHE)>,
<Atom 124 (O) of chain 0 residue 8 (PHE)>,
<Atom 125 (H) of chain 0 residue 8 (PHE)>,
<Atom 126 (CB) of chain 0 residue 8 (PHE)>,
<Atom 127 (CG) of chain 0 residue 8 (PHE)>,
<Atom 128 (CZ) of chain 0 residue 8 (PHE)>,
<Atom 129 (CD1) of chain 0 residue 8 (PHE)>,
<Atom 130 (CE1) of chain 0 residue 8 (PHE)>,
<Atom 131 (CD2) of chain 0 residue 8 (PHE)>,
<Atom 132 (CE2) of chain 0 residue 8 (PHE)>,
<Atom 133 (HZ) of chain 0 residue 8 (PHE)>,
<Atom 134 (HA) of chain 0 residue 8 (PHE)>,
<Atom 135 (HE1) of chain 0 residue 8 (PHE)>,
<Atom 136 (HE2) of chain 0 residue 8 (PHE)>,
<Atom 137 (HD2) of chain 0 residue 8 (PHE)>,
<Atom 138 (HD1) of chain 0 residue 8 (PHE)>,
<Atom 139 (HB3) of chain 0 residue 8 (PHE)>,
<Atom 140 (HB2) of chain 0 residue 8 (PHE)>,
<Atom 141 (N) of chain 0 residue 9 (HIS)>,
<Atom 142 (CA) of chain 0 residue 9 (HIS)>,
<Atom 143 (C) of chain 0 residue 9 (HIS)>,
<Atom 144 (O) of chain 0 residue 9 (HIS)>,
<Atom 145 (H) of chain 0 residue 9 (HIS)>,
<Atom 146 (CB) of chain 0 residue 9 (HIS)>,
<Atom 147 (CG) of chain 0 residue 9 (HIS)>,
<Atom 148 (HA) of chain 0 residue 9 (HIS)>,
<Atom 149 (HB3) of chain 0 residue 9 (HIS)>,
<Atom 150 (HB2) of chain 0 residue 9 (HIS)>,
<Atom 151 (HD1) of chain 0 residue 9 (HIS)>,
<Atom 152 (HE1) of chain 0 residue 9 (HIS)>,
<Atom 153 (CE1) of chain 0 residue 9 (HIS)>,
<Atom 154 (CD2) of chain 0 residue 9 (HIS)>,
<Atom 155 (ND1) of chain 0 residue 9 (HIS)>,
<Atom 156 (NE2) of chain 0 residue 9 (HIS)>,
<Atom 157 (HD2) of chain 0 residue 9 (HIS)>,
<Atom 158 (N) of chain 0 residue 10 (PRO)>,
<Atom 159 (CA) of chain 0 residue 10 (PRO)>,
<Atom 160 (C) of chain 0 residue 10 (PRO)>,
<Atom 161 (O) of chain 0 residue 10 (PRO)>,
<Atom 162 (CB) of chain 0 residue 10 (PRO)>,
<Atom 163 (CD) of chain 0 residue 10 (PRO)>,
<Atom 164 (CG) of chain 0 residue 10 (PRO)>,
<Atom 165 (HG2) of chain 0 residue 10 (PRO)>,
<Atom 166 (HA) of chain 0 residue 10 (PRO)>,
<Atom 167 (HD3) of chain 0 residue 10 (PRO)>,
<Atom 168 (HD2) of chain 0 residue 10 (PRO)>,
<Atom 169 (HG3) of chain 0 residue 10 (PRO)>,
<Atom 170 (HB3) of chain 0 residue 10 (PRO)>,
<Atom 171 (HB2) of chain 0 residue 10 (PRO)>,
<Atom 172 (N) of chain 0 residue 11 (SER)>,
<Atom 173 (CA) of chain 0 residue 11 (SER)>,
<Atom 174 (C) of chain 0 residue 11 (SER)>,
<Atom 175 (O) of chain 0 residue 11 (SER)>,
<Atom 176 (H) of chain 0 residue 11 (SER)>,
<Atom 177 (CB) of chain 0 residue 11 (SER)>,
<Atom 178 (OG) of chain 0 residue 11 (SER)>,
<Atom 179 (HA) of chain 0 residue 11 (SER)>,
<Atom 180 (HB3) of chain 0 residue 11 (SER)>,
<Atom 181 (HB2) of chain 0 residue 11 (SER)>,
<Atom 182 (HG) of chain 0 residue 11 (SER)>,
<Atom 183 (N) of chain 0 residue 12 (ASP)>,
<Atom 184 (CA) of chain 0 residue 12 (ASP)>,
<Atom 185 (C) of chain 0 residue 12 (ASP)>,
<Atom 186 (O) of chain 0 residue 12 (ASP)>,
<Atom 187 (H) of chain 0 residue 12 (ASP)>,
<Atom 188 (CB) of chain 0 residue 12 (ASP)>,
<Atom 189 (CG) of chain 0 residue 12 (ASP)>,
<Atom 190 (OD1) of chain 0 residue 12 (ASP)>,
<Atom 191 (OD2) of chain 0 residue 12 (ASP)>,
<Atom 192 (HA) of chain 0 residue 12 (ASP)>,
<Atom 193 (HB3) of chain 0 residue 12 (ASP)>,
<Atom 194 (HB2) of chain 0 residue 12 (ASP)>,
<Atom 195 (N) of chain 0 residue 13 (ILE)>,
<Atom 196 (CA) of chain 0 residue 13 (ILE)>,
<Atom 197 (C) of chain 0 residue 13 (ILE)>,
<Atom 198 (O) of chain 0 residue 13 (ILE)>,
<Atom 199 (H) of chain 0 residue 13 (ILE)>,
<Atom 200 (CB) of chain 0 residue 13 (ILE)>,
<Atom 201 (CD1) of chain 0 residue 13 (ILE)>,
<Atom 202 (CG1) of chain 0 residue 13 (ILE)>,
<Atom 203 (CG2) of chain 0 residue 13 (ILE)>,
<Atom 204 (HA) of chain 0 residue 13 (ILE)>,
<Atom 205 (HG22) of chain 0 residue 13 (ILE)>,
<Atom 206 (HG21) of chain 0 residue 13 (ILE)>,
<Atom 207 (HB) of chain 0 residue 13 (ILE)>,
<Atom 208 (HG12) of chain 0 residue 13 (ILE)>,
<Atom 209 (HG13) of chain 0 residue 13 (ILE)>,
<Atom 210 (HD13) of chain 0 residue 13 (ILE)>,
<Atom 211 (HD12) of chain 0 residue 13 (ILE)>,
<Atom 212 (HG23) of chain 0 residue 13 (ILE)>,
<Atom 213 (HD11) of chain 0 residue 13 (ILE)>,
<Atom 214 (N) of chain 0 residue 14 (GLU)>,
<Atom 215 (CA) of chain 0 residue 14 (GLU)>,
<Atom 216 (C) of chain 0 residue 14 (GLU)>,
<Atom 217 (O) of chain 0 residue 14 (GLU)>,
<Atom 218 (H) of chain 0 residue 14 (GLU)>,
<Atom 219 (CB) of chain 0 residue 14 (GLU)>,
<Atom 220 (CD) of chain 0 residue 14 (GLU)>,
<Atom 221 (CG) of chain 0 residue 14 (GLU)>,
<Atom 222 (OE1) of chain 0 residue 14 (GLU)>,
<Atom 223 (OE2) of chain 0 residue 14 (GLU)>,
<Atom 224 (HG2) of chain 0 residue 14 (GLU)>,
<Atom 225 (HA) of chain 0 residue 14 (GLU)>,
<Atom 226 (HG3) of chain 0 residue 14 (GLU)>,
<Atom 227 (HB3) of chain 0 residue 14 (GLU)>,
<Atom 228 (HB2) of chain 0 residue 14 (GLU)>,
<Atom 229 (N) of chain 0 residue 15 (VAL)>,
<Atom 230 (CA) of chain 0 residue 15 (VAL)>,
<Atom 231 (C) of chain 0 residue 15 (VAL)>,
<Atom 232 (O) of chain 0 residue 15 (VAL)>,
<Atom 233 (H) of chain 0 residue 15 (VAL)>,
<Atom 234 (CB) of chain 0 residue 15 (VAL)>,
<Atom 235 (CG1) of chain 0 residue 15 (VAL)>,
<Atom 236 (CG2) of chain 0 residue 15 (VAL)>,
<Atom 237 (HA) of chain 0 residue 15 (VAL)>,
<Atom 238 (HG11) of chain 0 residue 15 (VAL)>,
<Atom 239 (HG21) of chain 0 residue 15 (VAL)>,
<Atom 240 (HB) of chain 0 residue 15 (VAL)>,
<Atom 241 (HG12) of chain 0 residue 15 (VAL)>,
<Atom 242 (HG13) of chain 0 residue 15 (VAL)>,
<Atom 243 (HG23) of chain 0 residue 15 (VAL)>,
<Atom 244 (HG22) of chain 0 residue 15 (VAL)>,
<Atom 245 (N) of chain 0 residue 16 (ASP)>,
<Atom 246 (CA) of chain 0 residue 16 (ASP)>,
<Atom 247 (C) of chain 0 residue 16 (ASP)>,
<Atom 248 (O) of chain 0 residue 16 (ASP)>,
<Atom 249 (H) of chain 0 residue 16 (ASP)>,
<Atom 250 (CB) of chain 0 residue 16 (ASP)>,
<Atom 251 (CG) of chain 0 residue 16 (ASP)>,
<Atom 252 (OD1) of chain 0 residue 16 (ASP)>,
<Atom 253 (OD2) of chain 0 residue 16 (ASP)>,
<Atom 254 (HA) of chain 0 residue 16 (ASP)>,
<Atom 255 (HB3) of chain 0 residue 16 (ASP)>,
<Atom 256 (HB2) of chain 0 residue 16 (ASP)>,
<Atom 257 (N) of chain 0 residue 17 (LEU)>,
<Atom 258 (CA) of chain 0 residue 17 (LEU)>,
<Atom 259 (C) of chain 0 residue 17 (LEU)>,
<Atom 260 (O) of chain 0 residue 17 (LEU)>,
<Atom 261 (H) of chain 0 residue 17 (LEU)>,
<Atom 262 (CB) of chain 0 residue 17 (LEU)>,
<Atom 263 (CG) of chain 0 residue 17 (LEU)>,
<Atom 264 (CD1) of chain 0 residue 17 (LEU)>,
<Atom 265 (CD2) of chain 0 residue 17 (LEU)>,
<Atom 266 (HD22) of chain 0 residue 17 (LEU)>,
<Atom 267 (HD23) of chain 0 residue 17 (LEU)>,
<Atom 268 (HD21) of chain 0 residue 17 (LEU)>,
<Atom 269 (HD13) of chain 0 residue 17 (LEU)>,
<Atom 270 (HD12) of chain 0 residue 17 (LEU)>,
<Atom 271 (HD11) of chain 0 residue 17 (LEU)>,
<Atom 272 (HA) of chain 0 residue 17 (LEU)>,
<Atom 273 (HG) of chain 0 residue 17 (LEU)>,
<Atom 274 (HB3) of chain 0 residue 17 (LEU)>,
<Atom 275 (HB2) of chain 0 residue 17 (LEU)>,
<Atom 276 (N) of chain 0 residue 18 (LEU)>,
<Atom 277 (CA) of chain 0 residue 18 (LEU)>,
<Atom 278 (C) of chain 0 residue 18 (LEU)>,
<Atom 279 (O) of chain 0 residue 18 (LEU)>,
<Atom 280 (H) of chain 0 residue 18 (LEU)>,
<Atom 281 (CB) of chain 0 residue 18 (LEU)>,
<Atom 282 (CG) of chain 0 residue 18 (LEU)>,
<Atom 283 (CD1) of chain 0 residue 18 (LEU)>,
<Atom 284 (CD2) of chain 0 residue 18 (LEU)>,
<Atom 285 (HD22) of chain 0 residue 18 (LEU)>,
<Atom 286 (HD23) of chain 0 residue 18 (LEU)>,
<Atom 287 (HD21) of chain 0 residue 18 (LEU)>,
<Atom 288 (HD13) of chain 0 residue 18 (LEU)>,
<Atom 289 (HD12) of chain 0 residue 18 (LEU)>,
<Atom 290 (HD11) of chain 0 residue 18 (LEU)>,
<Atom 291 (HA) of chain 0 residue 18 (LEU)>,
<Atom 292 (HG) of chain 0 residue 18 (LEU)>,
<Atom 293 (HB3) of chain 0 residue 18 (LEU)>,
<Atom 294 (HB2) of chain 0 residue 18 (LEU)>,
<Atom 295 (N) of chain 0 residue 19 (LYS)>,
<Atom 296 (CA) of chain 0 residue 19 (LYS)>,
<Atom 297 (C) of chain 0 residue 19 (LYS)>,
<Atom 298 (O) of chain 0 residue 19 (LYS)>,
<Atom 299 (H) of chain 0 residue 19 (LYS)>,
<Atom 300 (CB) of chain 0 residue 19 (LYS)>,
<Atom 301 (CD) of chain 0 residue 19 (LYS)>,
<Atom 302 (CE) of chain 0 residue 19 (LYS)>,
<Atom 303 (CG) of chain 0 residue 19 (LYS)>,
<Atom 304 (HZ1) of chain 0 residue 19 (LYS)>,
<Atom 305 (HZ2) of chain 0 residue 19 (LYS)>,
<Atom 306 (HZ3) of chain 0 residue 19 (LYS)>,
<Atom 307 (NZ) of chain 0 residue 19 (LYS)>,
<Atom 308 (HA) of chain 0 residue 19 (LYS)>,
<Atom 309 (HE2) of chain 0 residue 19 (LYS)>,
<Atom 310 (HE3) of chain 0 residue 19 (LYS)>,
<Atom 311 (HG2) of chain 0 residue 19 (LYS)>,
<Atom 312 (HG3) of chain 0 residue 19 (LYS)>,
<Atom 313 (HD3) of chain 0 residue 19 (LYS)>,
<Atom 314 (HD2) of chain 0 residue 19 (LYS)>,
<Atom 315 (HB3) of chain 0 residue 19 (LYS)>,
<Atom 316 (HB2) of chain 0 residue 19 (LYS)>,
<Atom 317 (N) of chain 0 residue 20 (ASN)>,
<Atom 318 (CA) of chain 0 residue 20 (ASN)>,
<Atom 319 (C) of chain 0 residue 20 (ASN)>,
<Atom 320 (O) of chain 0 residue 20 (ASN)>,
<Atom 321 (H) of chain 0 residue 20 (ASN)>,
<Atom 322 (CB) of chain 0 residue 20 (ASN)>,
<Atom 323 (CG) of chain 0 residue 20 (ASN)>,
<Atom 324 (HA) of chain 0 residue 20 (ASN)>,
<Atom 325 (HB3) of chain 0 residue 20 (ASN)>,
<Atom 326 (HB2) of chain 0 residue 20 (ASN)>,
<Atom 327 (OD1) of chain 0 residue 20 (ASN)>,
<Atom 328 (ND2) of chain 0 residue 20 (ASN)>,
<Atom 329 (HD22) of chain 0 residue 20 (ASN)>,
<Atom 330 (HD21) of chain 0 residue 20 (ASN)>,
<Atom 331 (N) of chain 0 residue 21 (GLY)>,
<Atom 332 (CA) of chain 0 residue 21 (GLY)>,
<Atom 333 (C) of chain 0 residue 21 (GLY)>,
<Atom 334 (O) of chain 0 residue 21 (GLY)>,
<Atom 335 (H) of chain 0 residue 21 (GLY)>,
<Atom 336 (HA2) of chain 0 residue 21 (GLY)>,
<Atom 337 (HA3) of chain 0 residue 21 (GLY)>,
<Atom 338 (N) of chain 0 residue 22 (GLU)>,
<Atom 339 (CA) of chain 0 residue 22 (GLU)>,
<Atom 340 (C) of chain 0 residue 22 (GLU)>,
<Atom 341 (O) of chain 0 residue 22 (GLU)>,
<Atom 342 (H) of chain 0 residue 22 (GLU)>,
<Atom 343 (CB) of chain 0 residue 22 (GLU)>,
<Atom 344 (CD) of chain 0 residue 22 (GLU)>,
<Atom 345 (CG) of chain 0 residue 22 (GLU)>,
<Atom 346 (OE1) of chain 0 residue 22 (GLU)>,
<Atom 347 (OE2) of chain 0 residue 22 (GLU)>,
<Atom 348 (HG2) of chain 0 residue 22 (GLU)>,
<Atom 349 (HA) of chain 0 residue 22 (GLU)>,
<Atom 350 (HG3) of chain 0 residue 22 (GLU)>,
<Atom 351 (HB3) of chain 0 residue 22 (GLU)>,
<Atom 352 (HB2) of chain 0 residue 22 (GLU)>,
<Atom 353 (N) of chain 0 residue 23 (ARG)>,
<Atom 354 (CA) of chain 0 residue 23 (ARG)>,
<Atom 355 (C) of chain 0 residue 23 (ARG)>,
<Atom 356 (O) of chain 0 residue 23 (ARG)>,
<Atom 357 (H) of chain 0 residue 23 (ARG)>,
<Atom 358 (CB) of chain 0 residue 23 (ARG)>,
<Atom 359 (CD) of chain 0 residue 23 (ARG)>,
<Atom 360 (HE) of chain 0 residue 23 (ARG)>,
<Atom 361 (NE) of chain 0 residue 23 (ARG)>,
<Atom 362 (CG) of chain 0 residue 23 (ARG)>,
<Atom 363 (CZ) of chain 0 residue 23 (ARG)>,
<Atom 364 (HH11) of chain 0 residue 23 (ARG)>,
<Atom 365 (HH12) of chain 0 residue 23 (ARG)>,
<Atom 366 (NH1) of chain 0 residue 23 (ARG)>,
<Atom 367 (HH21) of chain 0 residue 23 (ARG)>,
<Atom 368 (HH22) of chain 0 residue 23 (ARG)>,
<Atom 369 (NH2) of chain 0 residue 23 (ARG)>,
<Atom 370 (HG3) of chain 0 residue 23 (ARG)>,
<Atom 371 (HA) of chain 0 residue 23 (ARG)>,
<Atom 372 (HG2) of chain 0 residue 23 (ARG)>,
<Atom 373 (HD3) of chain 0 residue 23 (ARG)>,
<Atom 374 (HD2) of chain 0 residue 23 (ARG)>,
<Atom 375 (HB3) of chain 0 residue 23 (ARG)>,
<Atom 376 (HB2) of chain 0 residue 23 (ARG)>,
<Atom 377 (N) of chain 0 residue 24 (ILE)>,
<Atom 378 (CA) of chain 0 residue 24 (ILE)>,
<Atom 379 (C) of chain 0 residue 24 (ILE)>,
<Atom 380 (O) of chain 0 residue 24 (ILE)>,
<Atom 381 (H) of chain 0 residue 24 (ILE)>,
<Atom 382 (CB) of chain 0 residue 24 (ILE)>,
<Atom 383 (CD1) of chain 0 residue 24 (ILE)>,
<Atom 384 (CG1) of chain 0 residue 24 (ILE)>,
<Atom 385 (CG2) of chain 0 residue 24 (ILE)>,
<Atom 386 (HA) of chain 0 residue 24 (ILE)>,
<Atom 387 (HG22) of chain 0 residue 24 (ILE)>,
<Atom 388 (HG21) of chain 0 residue 24 (ILE)>,
<Atom 389 (HB) of chain 0 residue 24 (ILE)>,
<Atom 390 (HG12) of chain 0 residue 24 (ILE)>,
<Atom 391 (HG13) of chain 0 residue 24 (ILE)>,
<Atom 392 (HD13) of chain 0 residue 24 (ILE)>,
<Atom 393 (HD12) of chain 0 residue 24 (ILE)>,
<Atom 394 (HG23) of chain 0 residue 24 (ILE)>,
<Atom 395 (HD11) of chain 0 residue 24 (ILE)>,
<Atom 396 (N) of chain 0 residue 25 (GLU)>,
<Atom 397 (CA) of chain 0 residue 25 (GLU)>,
<Atom 398 (C) of chain 0 residue 25 (GLU)>,
<Atom 399 (O) of chain 0 residue 25 (GLU)>,
<Atom 400 (H) of chain 0 residue 25 (GLU)>,
<Atom 401 (CB) of chain 0 residue 25 (GLU)>,
<Atom 402 (CD) of chain 0 residue 25 (GLU)>,
<Atom 403 (CG) of chain 0 residue 25 (GLU)>,
<Atom 404 (OE1) of chain 0 residue 25 (GLU)>,
<Atom 405 (OE2) of chain 0 residue 25 (GLU)>,
<Atom 406 (HG2) of chain 0 residue 25 (GLU)>,
<Atom 407 (HA) of chain 0 residue 25 (GLU)>,
<Atom 408 (HG3) of chain 0 residue 25 (GLU)>,
<Atom 409 (HB3) of chain 0 residue 25 (GLU)>,
<Atom 410 (HB2) of chain 0 residue 25 (GLU)>,
<Atom 411 (N) of chain 0 residue 26 (LYS)>,
<Atom 412 (CA) of chain 0 residue 26 (LYS)>,
<Atom 413 (C) of chain 0 residue 26 (LYS)>,
<Atom 414 (O) of chain 0 residue 26 (LYS)>,
<Atom 415 (H) of chain 0 residue 26 (LYS)>,
<Atom 416 (CB) of chain 0 residue 26 (LYS)>,
<Atom 417 (CD) of chain 0 residue 26 (LYS)>,
<Atom 418 (CE) of chain 0 residue 26 (LYS)>,
<Atom 419 (CG) of chain 0 residue 26 (LYS)>,
<Atom 420 (HZ1) of chain 0 residue 26 (LYS)>,
<Atom 421 (HZ2) of chain 0 residue 26 (LYS)>,
<Atom 422 (HZ3) of chain 0 residue 26 (LYS)>,
<Atom 423 (NZ) of chain 0 residue 26 (LYS)>,
<Atom 424 (HA) of chain 0 residue 26 (LYS)>,
<Atom 425 (HE2) of chain 0 residue 26 (LYS)>,
<Atom 426 (HE3) of chain 0 residue 26 (LYS)>,
<Atom 427 (HG2) of chain 0 residue 26 (LYS)>,
<Atom 428 (HG3) of chain 0 residue 26 (LYS)>,
<Atom 429 (HD3) of chain 0 residue 26 (LYS)>,
<Atom 430 (HD2) of chain 0 residue 26 (LYS)>,
<Atom 431 (HB3) of chain 0 residue 26 (LYS)>,
<Atom 432 (HB2) of chain 0 residue 26 (LYS)>,
<Atom 433 (N) of chain 0 residue 27 (VAL)>,
<Atom 434 (CA) of chain 0 residue 27 (VAL)>,
<Atom 435 (C) of chain 0 residue 27 (VAL)>,
<Atom 436 (O) of chain 0 residue 27 (VAL)>,
<Atom 437 (H) of chain 0 residue 27 (VAL)>,
<Atom 438 (CB) of chain 0 residue 27 (VAL)>,
<Atom 439 (CG1) of chain 0 residue 27 (VAL)>,
<Atom 440 (CG2) of chain 0 residue 27 (VAL)>,
<Atom 441 (HA) of chain 0 residue 27 (VAL)>,
<Atom 442 (HG11) of chain 0 residue 27 (VAL)>,
<Atom 443 (HG21) of chain 0 residue 27 (VAL)>,
<Atom 444 (HB) of chain 0 residue 27 (VAL)>,
<Atom 445 (HG12) of chain 0 residue 27 (VAL)>,
<Atom 446 (HG13) of chain 0 residue 27 (VAL)>,
<Atom 447 (HG23) of chain 0 residue 27 (VAL)>,
<Atom 448 (HG22) of chain 0 residue 27 (VAL)>,
<Atom 449 (N) of chain 0 residue 28 (GLU)>,
<Atom 450 (CA) of chain 0 residue 28 (GLU)>,
<Atom 451 (C) of chain 0 residue 28 (GLU)>,
<Atom 452 (O) of chain 0 residue 28 (GLU)>,
<Atom 453 (H) of chain 0 residue 28 (GLU)>,
<Atom 454 (CB) of chain 0 residue 28 (GLU)>,
<Atom 455 (CD) of chain 0 residue 28 (GLU)>,
<Atom 456 (CG) of chain 0 residue 28 (GLU)>,
<Atom 457 (OE1) of chain 0 residue 28 (GLU)>,
<Atom 458 (OE2) of chain 0 residue 28 (GLU)>,
<Atom 459 (HG2) of chain 0 residue 28 (GLU)>,
<Atom 460 (HA) of chain 0 residue 28 (GLU)>,
<Atom 461 (HG3) of chain 0 residue 28 (GLU)>,
<Atom 462 (HB3) of chain 0 residue 28 (GLU)>,
<Atom 463 (HB2) of chain 0 residue 28 (GLU)>,
<Atom 464 (N) of chain 0 residue 29 (HIS)>,
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<Atom 466 (C) of chain 0 residue 29 (HIS)>,
<Atom 467 (O) of chain 0 residue 29 (HIS)>,
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<Atom 469 (CB) of chain 0 residue 29 (HIS)>,
<Atom 470 (CG) of chain 0 residue 29 (HIS)>,
<Atom 471 (ND1) of chain 0 residue 29 (HIS)>,
<Atom 472 (CE1) of chain 0 residue 29 (HIS)>,
<Atom 473 (CD2) of chain 0 residue 29 (HIS)>,
<Atom 474 (NE2) of chain 0 residue 29 (HIS)>,
<Atom 475 (HD1) of chain 0 residue 29 (HIS)>,
<Atom 476 (HD2) of chain 0 residue 29 (HIS)>,
<Atom 477 (HE1) of chain 0 residue 29 (HIS)>,
<Atom 478 (HA) of chain 0 residue 29 (HIS)>,
<Atom 479 (HB3) of chain 0 residue 29 (HIS)>,
<Atom 480 (HB2) of chain 0 residue 29 (HIS)>,
<Atom 481 (N) of chain 0 residue 30 (SER)>,
<Atom 482 (CA) of chain 0 residue 30 (SER)>,
<Atom 483 (C) of chain 0 residue 30 (SER)>,
<Atom 484 (O) of chain 0 residue 30 (SER)>,
<Atom 485 (H) of chain 0 residue 30 (SER)>,
<Atom 486 (CB) of chain 0 residue 30 (SER)>,
<Atom 487 (OG) of chain 0 residue 30 (SER)>,
<Atom 488 (HA) of chain 0 residue 30 (SER)>,
<Atom 489 (HB3) of chain 0 residue 30 (SER)>,
<Atom 490 (HB2) of chain 0 residue 30 (SER)>,
<Atom 491 (HG) of chain 0 residue 30 (SER)>,
<Atom 492 (N) of chain 0 residue 31 (ASP)>,
<Atom 493 (CA) of chain 0 residue 31 (ASP)>,
<Atom 494 (C) of chain 0 residue 31 (ASP)>,
<Atom 495 (O) of chain 0 residue 31 (ASP)>,
<Atom 496 (H) of chain 0 residue 31 (ASP)>,
<Atom 497 (CB) of chain 0 residue 31 (ASP)>,
<Atom 498 (CG) of chain 0 residue 31 (ASP)>,
<Atom 499 (OD1) of chain 0 residue 31 (ASP)>,
<Atom 500 (OD2) of chain 0 residue 31 (ASP)>,
<Atom 501 (HA) of chain 0 residue 31 (ASP)>,
<Atom 502 (HB3) of chain 0 residue 31 (ASP)>,
<Atom 503 (HB2) of chain 0 residue 31 (ASP)>,
<Atom 504 (N) of chain 0 residue 32 (LEU)>,
<Atom 505 (CA) of chain 0 residue 32 (LEU)>,
<Atom 506 (C) of chain 0 residue 32 (LEU)>,
<Atom 507 (O) of chain 0 residue 32 (LEU)>,
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<Atom 509 (CB) of chain 0 residue 32 (LEU)>,
<Atom 510 (CG) of chain 0 residue 32 (LEU)>,
<Atom 511 (CD1) of chain 0 residue 32 (LEU)>,
<Atom 512 (CD2) of chain 0 residue 32 (LEU)>,
<Atom 513 (HD22) of chain 0 residue 32 (LEU)>,
<Atom 514 (HD23) of chain 0 residue 32 (LEU)>,
<Atom 515 (HD21) of chain 0 residue 32 (LEU)>,
<Atom 516 (HD13) of chain 0 residue 32 (LEU)>,
<Atom 517 (HD12) of chain 0 residue 32 (LEU)>,
<Atom 518 (HD11) of chain 0 residue 32 (LEU)>,
<Atom 519 (HA) of chain 0 residue 32 (LEU)>,
<Atom 520 (HG) of chain 0 residue 32 (LEU)>,
<Atom 521 (HB3) of chain 0 residue 32 (LEU)>,
<Atom 522 (HB2) of chain 0 residue 32 (LEU)>,
<Atom 523 (N) of chain 0 residue 33 (SER)>,
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<Atom 525 (C) of chain 0 residue 33 (SER)>,
<Atom 526 (O) of chain 0 residue 33 (SER)>,
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<Atom 528 (CB) of chain 0 residue 33 (SER)>,
<Atom 529 (OG) of chain 0 residue 33 (SER)>,
<Atom 530 (HA) of chain 0 residue 33 (SER)>,
<Atom 531 (HB3) of chain 0 residue 33 (SER)>,
<Atom 532 (HB2) of chain 0 residue 33 (SER)>,
<Atom 533 (HG) of chain 0 residue 33 (SER)>,
<Atom 534 (N) of chain 0 residue 34 (PHE)>,
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<Atom 536 (C) of chain 0 residue 34 (PHE)>,
<Atom 537 (O) of chain 0 residue 34 (PHE)>,
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<Atom 539 (CB) of chain 0 residue 34 (PHE)>,
<Atom 540 (CG) of chain 0 residue 34 (PHE)>,
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<Atom 542 (CD1) of chain 0 residue 34 (PHE)>,
<Atom 543 (CE1) of chain 0 residue 34 (PHE)>,
<Atom 544 (CD2) of chain 0 residue 34 (PHE)>,
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<Atom 546 (HZ) of chain 0 residue 34 (PHE)>,
<Atom 547 (HA) of chain 0 residue 34 (PHE)>,
<Atom 548 (HE1) of chain 0 residue 34 (PHE)>,
<Atom 549 (HE2) of chain 0 residue 34 (PHE)>,
<Atom 550 (HD2) of chain 0 residue 34 (PHE)>,
<Atom 551 (HD1) of chain 0 residue 34 (PHE)>,
<Atom 552 (HB3) of chain 0 residue 34 (PHE)>,
<Atom 553 (HB2) of chain 0 residue 34 (PHE)>,
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<Atom 555 (CA) of chain 0 residue 35 (SER)>,
<Atom 556 (C) of chain 0 residue 35 (SER)>,
<Atom 557 (O) of chain 0 residue 35 (SER)>,
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<Atom 559 (CB) of chain 0 residue 35 (SER)>,
<Atom 560 (OG) of chain 0 residue 35 (SER)>,
<Atom 561 (HA) of chain 0 residue 35 (SER)>,
<Atom 562 (HB3) of chain 0 residue 35 (SER)>,
<Atom 563 (HB2) of chain 0 residue 35 (SER)>,
<Atom 564 (HG) of chain 0 residue 35 (SER)>,
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<Atom 567 (C) of chain 0 residue 36 (LYS)>,
<Atom 568 (O) of chain 0 residue 36 (LYS)>,
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<Atom 570 (CB) of chain 0 residue 36 (LYS)>,
<Atom 571 (CD) of chain 0 residue 36 (LYS)>,
<Atom 572 (CE) of chain 0 residue 36 (LYS)>,
<Atom 573 (CG) of chain 0 residue 36 (LYS)>,
<Atom 574 (HZ1) of chain 0 residue 36 (LYS)>,
<Atom 575 (HZ2) of chain 0 residue 36 (LYS)>,
<Atom 576 (HZ3) of chain 0 residue 36 (LYS)>,
<Atom 577 (NZ) of chain 0 residue 36 (LYS)>,
<Atom 578 (HA) of chain 0 residue 36 (LYS)>,
<Atom 579 (HE2) of chain 0 residue 36 (LYS)>,
<Atom 580 (HE3) of chain 0 residue 36 (LYS)>,
<Atom 581 (HG2) of chain 0 residue 36 (LYS)>,
<Atom 582 (HG3) of chain 0 residue 36 (LYS)>,
<Atom 583 (HD3) of chain 0 residue 36 (LYS)>,
<Atom 584 (HD2) of chain 0 residue 36 (LYS)>,
<Atom 585 (HB3) of chain 0 residue 36 (LYS)>,
<Atom 586 (HB2) of chain 0 residue 36 (LYS)>,
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<Atom 589 (C) of chain 0 residue 37 (ASP)>,
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<Atom 592 (CB) of chain 0 residue 37 (ASP)>,
<Atom 593 (CG) of chain 0 residue 37 (ASP)>,
<Atom 594 (OD1) of chain 0 residue 37 (ASP)>,
<Atom 595 (OD2) of chain 0 residue 37 (ASP)>,
<Atom 596 (HA) of chain 0 residue 37 (ASP)>,
<Atom 597 (HB3) of chain 0 residue 37 (ASP)>,
<Atom 598 (HB2) of chain 0 residue 37 (ASP)>,
<Atom 599 (N) of chain 0 residue 38 (TRP)>,
<Atom 600 (CA) of chain 0 residue 38 (TRP)>,
<Atom 601 (C) of chain 0 residue 38 (TRP)>,
<Atom 602 (O) of chain 0 residue 38 (TRP)>,
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<Atom 604 (CB) of chain 0 residue 38 (TRP)>,
<Atom 605 (HB3) of chain 0 residue 38 (TRP)>,
<Atom 606 (HB2) of chain 0 residue 38 (TRP)>,
<Atom 607 (CG) of chain 0 residue 38 (TRP)>,
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<Atom 609 (HE1) of chain 0 residue 38 (TRP)>,
<Atom 610 (NE1) of chain 0 residue 38 (TRP)>,
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<Atom 613 (CH2) of chain 0 residue 38 (TRP)>,
<Atom 614 (CZ2) of chain 0 residue 38 (TRP)>,
<Atom 615 (CE3) of chain 0 residue 38 (TRP)>,
<Atom 616 (CZ3) of chain 0 residue 38 (TRP)>,
<Atom 617 (HH2) of chain 0 residue 38 (TRP)>,
<Atom 618 (HA) of chain 0 residue 38 (TRP)>,
<Atom 619 (HE3) of chain 0 residue 38 (TRP)>,
<Atom 620 (HZ3) of chain 0 residue 38 (TRP)>,
<Atom 621 (HZ2) of chain 0 residue 38 (TRP)>,
<Atom 622 (HD1) of chain 0 residue 38 (TRP)>,
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<Atom 625 (C) of chain 0 residue 39 (SER)>,
<Atom 626 (O) of chain 0 residue 39 (SER)>,
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<Atom 636 (C) of chain 0 residue 40 (PHE)>,
<Atom 637 (O) of chain 0 residue 40 (PHE)>,
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<Atom 640 (CG) of chain 0 residue 40 (PHE)>,
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<Atom 687 (HD13) of chain 0 residue 42 (LEU)>,
<Atom 688 (HD12) of chain 0 residue 42 (LEU)>,
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<Atom 780 (HA) of chain 0 residue 47 (GLU)>,
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<Atom 782 (HB3) of chain 0 residue 47 (GLU)>,
<Atom 783 (HB2) of chain 0 residue 47 (GLU)>,
<Atom 784 (N) of chain 0 residue 48 (PHE)>,
<Atom 785 (CA) of chain 0 residue 48 (PHE)>,
<Atom 786 (C) of chain 0 residue 48 (PHE)>,
<Atom 787 (O) of chain 0 residue 48 (PHE)>,
<Atom 788 (H) of chain 0 residue 48 (PHE)>,
<Atom 789 (CB) of chain 0 residue 48 (PHE)>,
<Atom 790 (CG) of chain 0 residue 48 (PHE)>,
<Atom 791 (CZ) of chain 0 residue 48 (PHE)>,
<Atom 792 (CD1) of chain 0 residue 48 (PHE)>,
<Atom 793 (CE1) of chain 0 residue 48 (PHE)>,
<Atom 794 (CD2) of chain 0 residue 48 (PHE)>,
<Atom 795 (CE2) of chain 0 residue 48 (PHE)>,
<Atom 796 (HZ) of chain 0 residue 48 (PHE)>,
<Atom 797 (HA) of chain 0 residue 48 (PHE)>,
<Atom 798 (HE1) of chain 0 residue 48 (PHE)>,
<Atom 799 (HE2) of chain 0 residue 48 (PHE)>,
<Atom 800 (HD2) of chain 0 residue 48 (PHE)>,
<Atom 801 (HD1) of chain 0 residue 48 (PHE)>,
<Atom 802 (HB3) of chain 0 residue 48 (PHE)>,
<Atom 803 (HB2) of chain 0 residue 48 (PHE)>,
<Atom 804 (N) of chain 0 residue 49 (THR)>,
<Atom 805 (CA) of chain 0 residue 49 (THR)>,
<Atom 806 (C) of chain 0 residue 49 (THR)>,
<Atom 807 (O) of chain 0 residue 49 (THR)>,
<Atom 808 (H) of chain 0 residue 49 (THR)>,
<Atom 809 (CB) of chain 0 residue 49 (THR)>,
<Atom 810 (OG1) of chain 0 residue 49 (THR)>,
<Atom 811 (CG2) of chain 0 residue 49 (THR)>,
<Atom 812 (HA) of chain 0 residue 49 (THR)>,
<Atom 813 (HG22) of chain 0 residue 49 (THR)>,
<Atom 814 (HG21) of chain 0 residue 49 (THR)>,
<Atom 815 (HB) of chain 0 residue 49 (THR)>,
<Atom 816 (HG23) of chain 0 residue 49 (THR)>,
<Atom 817 (HG1) of chain 0 residue 49 (THR)>,
<Atom 818 (N) of chain 0 residue 50 (PRO)>,
<Atom 819 (CA) of chain 0 residue 50 (PRO)>,
<Atom 820 (C) of chain 0 residue 50 (PRO)>,
<Atom 821 (O) of chain 0 residue 50 (PRO)>,
<Atom 822 (CB) of chain 0 residue 50 (PRO)>,
<Atom 823 (CD) of chain 0 residue 50 (PRO)>,
<Atom 824 (CG) of chain 0 residue 50 (PRO)>,
<Atom 825 (HG2) of chain 0 residue 50 (PRO)>,
<Atom 826 (HA) of chain 0 residue 50 (PRO)>,
<Atom 827 (HD3) of chain 0 residue 50 (PRO)>,
<Atom 828 (HD2) of chain 0 residue 50 (PRO)>,
<Atom 829 (HG3) of chain 0 residue 50 (PRO)>,
<Atom 830 (HB3) of chain 0 residue 50 (PRO)>,
<Atom 831 (HB2) of chain 0 residue 50 (PRO)>,
<Atom 832 (N) of chain 0 residue 51 (THR)>,
<Atom 833 (CA) of chain 0 residue 51 (THR)>,
<Atom 834 (C) of chain 0 residue 51 (THR)>,
<Atom 835 (O) of chain 0 residue 51 (THR)>,
<Atom 836 (H) of chain 0 residue 51 (THR)>,
<Atom 837 (CB) of chain 0 residue 51 (THR)>,
<Atom 838 (OG1) of chain 0 residue 51 (THR)>,
<Atom 839 (CG2) of chain 0 residue 51 (THR)>,
<Atom 840 (HA) of chain 0 residue 51 (THR)>,
<Atom 841 (HG22) of chain 0 residue 51 (THR)>,
<Atom 842 (HG21) of chain 0 residue 51 (THR)>,
<Atom 843 (HB) of chain 0 residue 51 (THR)>,
<Atom 844 (HG23) of chain 0 residue 51 (THR)>,
<Atom 845 (HG1) of chain 0 residue 51 (THR)>,
<Atom 846 (N) of chain 0 residue 52 (GLU)>,
<Atom 847 (CA) of chain 0 residue 52 (GLU)>,
<Atom 848 (C) of chain 0 residue 52 (GLU)>,
<Atom 849 (O) of chain 0 residue 52 (GLU)>,
<Atom 850 (H) of chain 0 residue 52 (GLU)>,
<Atom 851 (CB) of chain 0 residue 52 (GLU)>,
<Atom 852 (CD) of chain 0 residue 52 (GLU)>,
<Atom 853 (CG) of chain 0 residue 52 (GLU)>,
<Atom 854 (OE1) of chain 0 residue 52 (GLU)>,
<Atom 855 (OE2) of chain 0 residue 52 (GLU)>,
<Atom 856 (HG2) of chain 0 residue 52 (GLU)>,
<Atom 857 (HA) of chain 0 residue 52 (GLU)>,
<Atom 858 (HG3) of chain 0 residue 52 (GLU)>,
<Atom 859 (HB3) of chain 0 residue 52 (GLU)>,
<Atom 860 (HB2) of chain 0 residue 52 (GLU)>,
<Atom 861 (N) of chain 0 residue 53 (LYS)>,
<Atom 862 (CA) of chain 0 residue 53 (LYS)>,
<Atom 863 (C) of chain 0 residue 53 (LYS)>,
<Atom 864 (O) of chain 0 residue 53 (LYS)>,
<Atom 865 (H) of chain 0 residue 53 (LYS)>,
<Atom 866 (CB) of chain 0 residue 53 (LYS)>,
<Atom 867 (CD) of chain 0 residue 53 (LYS)>,
<Atom 868 (CE) of chain 0 residue 53 (LYS)>,
<Atom 869 (CG) of chain 0 residue 53 (LYS)>,
<Atom 870 (HZ1) of chain 0 residue 53 (LYS)>,
<Atom 871 (HZ2) of chain 0 residue 53 (LYS)>,
<Atom 872 (HZ3) of chain 0 residue 53 (LYS)>,
<Atom 873 (NZ) of chain 0 residue 53 (LYS)>,
<Atom 874 (HA) of chain 0 residue 53 (LYS)>,
<Atom 875 (HE2) of chain 0 residue 53 (LYS)>,
<Atom 876 (HE3) of chain 0 residue 53 (LYS)>,
<Atom 877 (HG2) of chain 0 residue 53 (LYS)>,
<Atom 878 (HG3) of chain 0 residue 53 (LYS)>,
<Atom 879 (HD3) of chain 0 residue 53 (LYS)>,
<Atom 880 (HD2) of chain 0 residue 53 (LYS)>,
<Atom 881 (HB3) of chain 0 residue 53 (LYS)>,
<Atom 882 (HB2) of chain 0 residue 53 (LYS)>,
<Atom 883 (N) of chain 0 residue 54 (ASP)>,
<Atom 884 (CA) of chain 0 residue 54 (ASP)>,
<Atom 885 (C) of chain 0 residue 54 (ASP)>,
<Atom 886 (O) of chain 0 residue 54 (ASP)>,
<Atom 887 (H) of chain 0 residue 54 (ASP)>,
<Atom 888 (CB) of chain 0 residue 54 (ASP)>,
<Atom 889 (CG) of chain 0 residue 54 (ASP)>,
<Atom 890 (OD1) of chain 0 residue 54 (ASP)>,
<Atom 891 (OD2) of chain 0 residue 54 (ASP)>,
<Atom 892 (HA) of chain 0 residue 54 (ASP)>,
<Atom 893 (HB3) of chain 0 residue 54 (ASP)>,
<Atom 894 (HB2) of chain 0 residue 54 (ASP)>,
<Atom 895 (N) of chain 0 residue 55 (GLU)>,
<Atom 896 (CA) of chain 0 residue 55 (GLU)>,
<Atom 897 (C) of chain 0 residue 55 (GLU)>,
<Atom 898 (O) of chain 0 residue 55 (GLU)>,
<Atom 899 (H) of chain 0 residue 55 (GLU)>,
<Atom 900 (CB) of chain 0 residue 55 (GLU)>,
<Atom 901 (CD) of chain 0 residue 55 (GLU)>,
<Atom 902 (CG) of chain 0 residue 55 (GLU)>,
<Atom 903 (OE1) of chain 0 residue 55 (GLU)>,
<Atom 904 (OE2) of chain 0 residue 55 (GLU)>,
<Atom 905 (HG2) of chain 0 residue 55 (GLU)>,
<Atom 906 (HA) of chain 0 residue 55 (GLU)>,
<Atom 907 (HG3) of chain 0 residue 55 (GLU)>,
<Atom 908 (HB3) of chain 0 residue 55 (GLU)>,
<Atom 909 (HB2) of chain 0 residue 55 (GLU)>,
<Atom 910 (N) of chain 0 residue 56 (TYR)>,
<Atom 911 (CA) of chain 0 residue 56 (TYR)>,
<Atom 912 (C) of chain 0 residue 56 (TYR)>,
<Atom 913 (O) of chain 0 residue 56 (TYR)>,
<Atom 914 (H) of chain 0 residue 56 (TYR)>,
<Atom 915 (CB) of chain 0 residue 56 (TYR)>,
<Atom 916 (CG) of chain 0 residue 56 (TYR)>,
<Atom 917 (OH) of chain 0 residue 56 (TYR)>,
<Atom 918 (CZ) of chain 0 residue 56 (TYR)>,
<Atom 919 (CD1) of chain 0 residue 56 (TYR)>,
<Atom 920 (CE1) of chain 0 residue 56 (TYR)>,
<Atom 921 (CD2) of chain 0 residue 56 (TYR)>,
<Atom 922 (CE2) of chain 0 residue 56 (TYR)>,
<Atom 923 (HA) of chain 0 residue 56 (TYR)>,
<Atom 924 (HE1) of chain 0 residue 56 (TYR)>,
<Atom 925 (HE2) of chain 0 residue 56 (TYR)>,
<Atom 926 (HD2) of chain 0 residue 56 (TYR)>,
<Atom 927 (HD1) of chain 0 residue 56 (TYR)>,
<Atom 928 (HB3) of chain 0 residue 56 (TYR)>,
<Atom 929 (HB2) of chain 0 residue 56 (TYR)>,
<Atom 930 (HH) of chain 0 residue 56 (TYR)>,
<Atom 931 (N) of chain 0 residue 57 (ALA)>,
<Atom 932 (CA) of chain 0 residue 57 (ALA)>,
<Atom 933 (C) of chain 0 residue 57 (ALA)>,
<Atom 934 (O) of chain 0 residue 57 (ALA)>,
<Atom 935 (H) of chain 0 residue 57 (ALA)>,
<Atom 936 (CB) of chain 0 residue 57 (ALA)>,
<Atom 937 (HA) of chain 0 residue 57 (ALA)>,
<Atom 938 (HB1) of chain 0 residue 57 (ALA)>,
<Atom 939 (HB3) of chain 0 residue 57 (ALA)>,
<Atom 940 (HB2) of chain 0 residue 57 (ALA)>,
<Atom 941 (N) of chain 0 residue 58 (CYS)>,
<Atom 942 (CA) of chain 0 residue 58 (CYS)>,
<Atom 943 (C) of chain 0 residue 58 (CYS)>,
<Atom 944 (O) of chain 0 residue 58 (CYS)>,
<Atom 945 (H) of chain 0 residue 58 (CYS)>,
<Atom 946 (CB) of chain 0 residue 58 (CYS)>,
<Atom 947 (SG) of chain 0 residue 58 (CYS)>,
<Atom 948 (HA) of chain 0 residue 58 (CYS)>,
<Atom 949 (HB3) of chain 0 residue 58 (CYS)>,
<Atom 950 (HB2) of chain 0 residue 58 (CYS)>,
<Atom 951 (HG) of chain 0 residue 58 (CYS)>,
<Atom 952 (N) of chain 0 residue 59 (ARG)>,
<Atom 953 (CA) of chain 0 residue 59 (ARG)>,
<Atom 954 (C) of chain 0 residue 59 (ARG)>,
<Atom 955 (O) of chain 0 residue 59 (ARG)>,
<Atom 956 (H) of chain 0 residue 59 (ARG)>,
<Atom 957 (CB) of chain 0 residue 59 (ARG)>,
<Atom 958 (CD) of chain 0 residue 59 (ARG)>,
<Atom 959 (HE) of chain 0 residue 59 (ARG)>,
<Atom 960 (NE) of chain 0 residue 59 (ARG)>,
<Atom 961 (CG) of chain 0 residue 59 (ARG)>,
<Atom 962 (CZ) of chain 0 residue 59 (ARG)>,
<Atom 963 (HH11) of chain 0 residue 59 (ARG)>,
<Atom 964 (HH12) of chain 0 residue 59 (ARG)>,
<Atom 965 (NH1) of chain 0 residue 59 (ARG)>,
<Atom 966 (HH21) of chain 0 residue 59 (ARG)>,
<Atom 967 (HH22) of chain 0 residue 59 (ARG)>,
<Atom 968 (NH2) of chain 0 residue 59 (ARG)>,
<Atom 969 (HG3) of chain 0 residue 59 (ARG)>,
<Atom 970 (HA) of chain 0 residue 59 (ARG)>,
<Atom 971 (HG2) of chain 0 residue 59 (ARG)>,
<Atom 972 (HD3) of chain 0 residue 59 (ARG)>,
<Atom 973 (HD2) of chain 0 residue 59 (ARG)>,
<Atom 974 (HB3) of chain 0 residue 59 (ARG)>,
<Atom 975 (HB2) of chain 0 residue 59 (ARG)>,
<Atom 976 (N) of chain 0 residue 60 (VAL)>,
<Atom 977 (CA) of chain 0 residue 60 (VAL)>,
<Atom 978 (C) of chain 0 residue 60 (VAL)>,
<Atom 979 (O) of chain 0 residue 60 (VAL)>,
<Atom 980 (H) of chain 0 residue 60 (VAL)>,
<Atom 981 (CB) of chain 0 residue 60 (VAL)>,
<Atom 982 (CG1) of chain 0 residue 60 (VAL)>,
<Atom 983 (CG2) of chain 0 residue 60 (VAL)>,
<Atom 984 (HA) of chain 0 residue 60 (VAL)>,
<Atom 985 (HG11) of chain 0 residue 60 (VAL)>,
<Atom 986 (HG21) of chain 0 residue 60 (VAL)>,
<Atom 987 (HB) of chain 0 residue 60 (VAL)>,
<Atom 988 (HG12) of chain 0 residue 60 (VAL)>,
<Atom 989 (HG13) of chain 0 residue 60 (VAL)>,
<Atom 990 (HG23) of chain 0 residue 60 (VAL)>,
<Atom 991 (HG22) of chain 0 residue 60 (VAL)>,
<Atom 992 (N) of chain 0 residue 61 (ASN)>,
<Atom 993 (CA) of chain 0 residue 61 (ASN)>,
<Atom 994 (C) of chain 0 residue 61 (ASN)>,
<Atom 995 (O) of chain 0 residue 61 (ASN)>,
<Atom 996 (H) of chain 0 residue 61 (ASN)>,
<Atom 997 (CB) of chain 0 residue 61 (ASN)>,
<Atom 998 (CG) of chain 0 residue 61 (ASN)>,
<Atom 999 (HA) of chain 0 residue 61 (ASN)>,
...]
In [10]:
b = list(a.residues())
In [12]:
c = b[0]
In [26]:
c.index
Out[26]:
1
In [16]:
list(c.atoms())
Out[16]:
[<Atom 0 (N) of chain 0 residue 0 (PHE)>,
<Atom 1 (CA) of chain 0 residue 0 (PHE)>,
<Atom 2 (C) of chain 0 residue 0 (PHE)>,
<Atom 3 (O) of chain 0 residue 0 (PHE)>,
<Atom 4 (H) of chain 0 residue 0 (PHE)>,
<Atom 5 (H2) of chain 0 residue 0 (PHE)>,
<Atom 6 (H3) of chain 0 residue 0 (PHE)>,
<Atom 7 (CB) of chain 0 residue 0 (PHE)>,
<Atom 8 (CG) of chain 0 residue 0 (PHE)>,
<Atom 9 (CZ) of chain 0 residue 0 (PHE)>,
<Atom 10 (CD1) of chain 0 residue 0 (PHE)>,
<Atom 11 (CE1) of chain 0 residue 0 (PHE)>,
<Atom 12 (CD2) of chain 0 residue 0 (PHE)>,
<Atom 13 (CE2) of chain 0 residue 0 (PHE)>,
<Atom 14 (HZ) of chain 0 residue 0 (PHE)>,
<Atom 15 (HA) of chain 0 residue 0 (PHE)>,
<Atom 16 (HE1) of chain 0 residue 0 (PHE)>,
<Atom 17 (HE2) of chain 0 residue 0 (PHE)>,
<Atom 18 (HD2) of chain 0 residue 0 (PHE)>,
<Atom 19 (HD1) of chain 0 residue 0 (PHE)>,
<Atom 20 (HB3) of chain 0 residue 0 (PHE)>,
<Atom 21 (HB2) of chain 0 residue 0 (PHE)>]
Content source: luwei0917/awsemmd_script
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