In [ ]:
%time !/usr/bin/time -v emb15 --queries ../data/references/rep82/rep82.shear.fna --references ../data/references/rep82/rep82.edx --accelerator ../data/references/rep82/rep82.acx --output ../data/references/rep82/shear_results.b6 --id .98 --npenalize --skipambig --taxa_ncbi --taxonomy ../data/references/rep82/rep82.tax  --threads 48 &> ../data/references/rep82/rep82.shear.log

In [ ]: