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base = "/project/flatiron2/analysis_SHOGUN/data/references/linear"
%time !emb15 --references {base}/rep82_combined.fixed.fna --output {base}/rep82_combined.edb --npenalize --makedb --fingerprint --accelerator {base}/rep82_combined.acx --shear --threads 32 > {base}/embalmer_build.log
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