In [1]:

    

import tables as tb
import pandas as pd


    

In [2]:

    

from klustaviewa.dataio import HDF5Writer, HDF5Loader, klusters_to_hdf5, MemMappedText
import klustaviewa.dataio.hdf5loader
import klustaviewa.dataio.selection
import klustaviewa.dataio.tools
reload(klustaviewa.dataio.hdf5loader)
reload(klustaviewa.dataio.selection)
reload(klustaviewa.dataio.tools)


    

    
Out[2]:





<module 'klustaviewa.dataio.tools' from 'D:\Git\klustaviewa\klustaviewa\dataio\tools.py'>

In [6]:

    

folder = r"D:\Spike Sorting\sirota"
basename = "ec016.694_711"


    

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filename = os.path.join(folder, basename + '.xml')
filename_h5 = os.path.join(folder, basename + '.main.h5')


    

In [8]:

    

# Convert in HDF5.
%timeit -r 1 -n 1 klusters_to_hdf5(filename)


    

    




1 loops, best of 1: 58 s per loop

In [6]:

    

%load_ext line_profiler


    

In [7]:

    

%lprun -f HDF5Writer.write_spike -f HDF5Writer.read_next_spike -f MemMappedText.next klusters_to_hdf5(filename)


    

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