Loading required package: ggplot2
Loading required package: cowplot
Attaching package: ‘cowplot’
The following object is masked from ‘package:ggplot2’:
ggsave
Loading required package: Matrix
Warning message:
“replacing previous import ‘colorspace::plot’ by ‘graphics::plot’ when loading ‘NMF’”Warning message:
“replacing previous import ‘dendextend::cutree’ by ‘stats::cutree’ when loading ‘NMF’”
Attaching package: ‘dplyr’
The following object is masked from ‘package:Biobase’:
combine
The following objects are masked from ‘package:BiocGenerics’:
combine, intersect, setdiff, union
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
Loading required package: VGAM
Loading required package: stats4
Loading required package: splines
Loading required package: DDRTree
Loading required package: irlba
Loading required package: RColorBrewer
Loading required package: bit64
Loading required package: bit
Attaching package bit
package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
creators: bit bitwhich
coercion: as.logical as.integer as.bit as.bitwhich which
operator: ! & | xor != ==
querying: print length any all min max range sum summary
bit access: length<- [ [<- [[ [[<-
for more help type ?bit
Attaching package: ‘bit’
The following object is masked from ‘package:base’:
xor
Attaching package bit64
package:bit64 (c) 2011-2012 Jens Oehlschlaegel
creators: integer64 seq :
coercion: as.integer64 as.vector as.logical as.integer as.double as.character as.bin
logical operator: ! & | xor != == < <= >= >
arithmetic operator: + - * / %/% %% ^
math: sign abs sqrt log log2 log10
math: floor ceiling trunc round
querying: is.integer64 is.vector [is.atomic} [length] format print str
values: is.na is.nan is.finite is.infinite
aggregation: any all min max range sum prod
cumulation: diff cummin cummax cumsum cumprod
access: length<- [ [<- [[ [[<-
combine: c rep cbind rbind as.data.frame
WARNING don't use as subscripts
WARNING semantics differ from integer
for more help type ?bit64
Attaching package: ‘bit64’
The following object is masked from ‘package:bit’:
still.identical
The following object is masked from ‘package:Biobase’:
cache
The following objects are masked from ‘package:BiocGenerics’:
match, order, rank
The following objects are masked from ‘package:base’:
:, %in%, is.double, match, order, rank
Loading required package: Rmisc
Loading required package: lattice
Loading required package: plyr
------------------------------------------------------------------------------
You have loaded plyr after dplyr - this is likely to cause problems.
If you need functions from both plyr and dplyr, please load plyr first, then dplyr:
library(plyr); library(dplyr)
------------------------------------------------------------------------------
Attaching package: ‘plyr’
The following objects are masked from ‘package:dplyr’:
arrange, count, desc, failwith, id, mutate, rename, summarise,
summarize
Attaching package: ‘cellrangerRkit’
The following object is masked from ‘package:Seurat’:
run_tsne
Attaching package: ‘reshape’
The following objects are masked from ‘package:plyr’:
rename, round_any
The following object is masked from ‘package:dplyr’:
rename
The following object is masked from ‘package:Matrix’:
expand
Loading tidyverse: tibble
Loading tidyverse: tidyr
Loading tidyverse: readr
Loading tidyverse: purrr
Conflicts with tidy packages ---------------------------------------------------
arrange(): dplyr, plyr
combine(): dplyr, Biobase, BiocGenerics
compact(): purrr, plyr
count(): dplyr, plyr
expand(): tidyr, reshape, Matrix
failwith(): dplyr, plyr
fill(): tidyr, VGAM
filter(): dplyr, stats
ggsave(): ggplot2, cowplot
id(): dplyr, plyr
lag(): dplyr, stats
mutate(): dplyr, plyr
Position(): ggplot2, BiocGenerics, base
rename(): dplyr, reshape, plyr
summarise(): dplyr, plyr
summarize(): dplyr, plyr