In [1]:

    

%run ~/relmapping/annot/notebooks/__init__.ipynb


    

    




/mnt/home3/jj374/anaconda36/lib/python3.6/site-packages/statsmodels/compat/pandas.py:56: FutureWarning: The pandas.core.datetools module is deprecated and will be removed in a future version. Please use the pandas.tseries module instead.
  from pandas.core import datetools






    




os.getcwd(): /mnt/beegfs/scratch_copy/ahringer/jj374/lab/relmapping

In [3]:

    

for stage in config['stages_wt']:
    fp = 'hmod_geo/tracks/H3K4me3_%s.bw' % (stage,)
    !md5sum {fp} | awk '{{print $$1}}'


    

    




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In [4]:

    

for stage in config['stages_wt']:
    fp = 'hmod_geo/tracks/H3K4me1_%s.bw' % (stage,)
    !md5sum {fp} | awk '{{print $$1}}'


    

    




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In [5]:

    

for stage in config['stages_wt']:
    fp = 'hmod_geo/tracks/H3K36me3_%s.bw' % (stage,)
    !md5sum {fp} | awk '{{print $$1}}'


    

    




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In [6]:

    

for stage in config['stages_wt']:
    fp = 'hmod_geo/tracks/H3K27me3_%s.bw' % (stage,)
    !md5sum {fp} | awk '{{print $$1}}'


    

    




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In [11]:

    

# file checksum -- H3K27me3
for sample in config['stages_wt_rep']:
    fp = 'hmod749/reads_md5sum/H3K27me3_%s.reads_md5sum.txt' % (sample,)
    !cat {fp} | awk '{{print $$1}}'


    

    




14d257c34307ec5612a64ab444c57336
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efe3205ed6b24f6a24a7c41194f095a2

In [12]:

    

# file checksum -- H3K36me3
for sample in config['stages_wt_rep']:
    fp = 'hmod749/reads_md5sum/H3K36me3_%s.reads_md5sum.txt' % (sample,)
    !cat {fp} | awk '{{print $$1}}'


    

    




dc9006648a03930f41a8baf7f79a30cd
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93627dc74d618760ae8c14a580c36b7a

In [13]:

    

# file checksum -- H3K4me1
for sample in config['stages_wt_rep']:
    fp = 'hmod749/reads_md5sum/H3K4me1_%s.reads_md5sum.txt' % (sample,)
    !cat {fp} | awk '{{print $$1}}'


    

    




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e48a4ef62c1a84b69494189a9d7fe3c1

In [14]:

    

# file checksum -- H3K4me3
for sample in config['stages_wt_rep']:
    fp = 'hmod749/reads_md5sum/H3K4me3_%s.reads_md5sum.txt' % (sample,)
    !cat {fp} | awk '{{print $$1}}'


    

    




44a451c7f54ba199d17eb1d8f8c41250
a100a60d8d0eac9c8d5c1f9f9ef4edeb
b37726ad03c1a69c8bf037e85451adde
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3e325bdf1c40782b52d89f8955f31f99

In [15]:

    

# read length -- H3K27me3
for sample in config['stages_wt_rep']:
    fp = 'hmod749/reads_readlen/H3K27me3_%s.reads_readlen.txt' % (sample,)
    !cat {fp} | awk '{{print $$1}}'


    

    




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In [16]:

    

# read length -- H3K36me3
for sample in config['stages_wt_rep']:
    fp = 'hmod749/reads_readlen/H3K36me3_%s.reads_readlen.txt' % (sample,)
    !cat {fp} | awk '{{print $$1}}'


    

    




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In [17]:

    

# read length -- H3K4me1
for sample in config['stages_wt_rep']:
    fp = 'hmod749/reads_readlen/H3K4me1_%s.reads_readlen.txt' % (sample,)
    !cat {fp} | awk '{{print $$1}}'


    

    




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In [18]:

    

# read length -- H3K4me3
for sample in config['stages_wt_rep']:
    fp = 'hmod749/reads_readlen/H3K4me3_%s.reads_readlen.txt' % (sample,)
    !cat {fp} | awk '{{print $$1}}'


    

    




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In [ ]: