HUSC pipeline

Wherein we demonstrate the capabilities of HUSC.

Setup

First, import everything we need and switch to the right directory.


In [ ]:
from husc import preprocess as hpre, io as hio, features as hfeat
from skimage import io

%cd ~/Data/marcelle-hcs-sample/images-work

Optionally, set up inline figures.


In [ ]:
%pylab inline

IO

Next, read in the required images.