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In [7]:



    


# Recursively convert 12 bpp to 16 bpp TIFF
import cv2
import os
from os import listdir, mkdir
from os.path import isfile, join



    











In [17]:



    


inRoot = r"c:\smart_data"
outRoot = r"c:\smartypants"
maxToProcessPerDirectory = 10
try:
    os.mkdir (outRoot)
except:
    pass



    











In [18]:



    


cv2.namedWindow ("cap")
for root, dirs, files in os.walk(inRoot):
    print root
    for d in dirs:
        inDir = join (root, d)
        outDir= inDir.replace(inRoot, outRoot)
        try:
            os.mkdir (outDir)
        except:
            pass
        onlyFiles = [ f for f in listdir(inDir) if isfile(join(inDir,f)) ]
        print root, d, inDir, outDir, len(onlyFiles)
     
        for i, f in enumerate(onlyFiles):
            if i > maxToProcessPerDirectory:
                pass
            elif f.endswith(".tif"):
                inPath = join(inDir, f)
                outPath = join(outDir, f)
                print  inPath, outPath 
                frame = cv2.imread(inPath, cv2.IMREAD_UNCHANGED)
                frame = 16 * frame 
                cv2.imwrite (outPath, frame)
                cv2.imshow('cap', frame) 
                cv2.waitKey (1)



    


















    






c:\smart_data
c:\smart_data Session_CAM c:\smart_data\Session_CAM c:\smartypants\Session_CAM 0
c:\smart_data\Session_CAM
c:\smart_data\Session_CAM Grid_2_SMART c:\smart_data\Session_CAM\Grid_2_SMART c:\smartypants\Session_CAM\Grid_2_SMART 305
c:\smart_data\Session_CAM\Grid_2_SMART\20151023151951585_2_None_camJJ.tif c:\smartypants\Session_CAM\Grid_2_SMART\20151023151951585_2_None_camJJ.tif
c:\smart_data\Session_CAM\Grid_2_SMART\20151023152109526_2_0_0_0_camJ.tif c:\smartypants\Session_CAM\Grid_2_SMART\20151023152109526_2_0_0_0_camJ.tif
c:\smart_data\Session_CAM\Grid_2_SMART\20151023152111933_2_0_-2_1_camJ.tif c:\smartypants\Session_CAM\Grid_2_SMART\20151023152111933_2_0_-2_1_camJ.tif
c:\smart_data\Session_CAM\Grid_2_SMART\20151023152114265_2_0_-1_1_camJ.tif c:\smartypants\Session_CAM\Grid_2_SMART\20151023152114265_2_0_-1_1_camJ.tif
c:\smart_data\Session_CAM\Grid_2_SMART\20151023152116603_2_0_0_1_camJ.tif c:\smartypants\Session_CAM\Grid_2_SMART\20151023152116603_2_0_0_1_camJ.tif
c:\smart_data\Session_CAM\Grid_2_SMART\20151023152118935_2_0_1_1_camJ.tif c:\smartypants\Session_CAM\Grid_2_SMART\20151023152118935_2_0_1_1_camJ.tif
c:\smart_data\Session_CAM\Grid_2_SMART\20151023152121304_2_0_1_2_camJ.tif c:\smartypants\Session_CAM\Grid_2_SMART\20151023152121304_2_0_1_2_camJ.tif
c:\smart_data\Session_CAM\Grid_2_SMART\20151023152123639_2_0_0_2_camJ.tif c:\smartypants\Session_CAM\Grid_2_SMART\20151023152123639_2_0_0_2_camJ.tif
c:\smart_data\Session_CAM\Grid_2_SMART\20151023152126317_2_0_-1_2_camJ.tif c:\smartypants\Session_CAM\Grid_2_SMART\20151023152126317_2_0_-1_2_camJ.tif
c:\smart_data\Session_CAM\Grid_2_SMART\20151023152128636_2_0_-2_2_camJ.tif c:\smartypants\Session_CAM\Grid_2_SMART\20151023152128636_2_0_-2_2_camJ.tif
c:\smart_data\Session_CAM\Grid_2_SMART\20151023152131018_2_0_-3_2_camJ.tif c:\smartypants\Session_CAM\Grid_2_SMART\20151023152131018_2_0_-3_2_camJ.tif
c:\smart_data\Session_CAM Grid_2_SMART_3.67nm c:\smart_data\Session_CAM\Grid_2_SMART_3.67nm c:\smartypants\Session_CAM\Grid_2_SMART_3.67nm 821
c:\smart_data\Session_CAM\Grid_2_SMART_3.67nm\20151023144335088_2_None_camJ.tif c:\smartypants\Session_CAM\Grid_2_SMART_3.67nm\20151023144335088_2_None_camJ.tif
c:\smart_data\Session_CAM\Grid_2_SMART_3.67nm\20151023144526030_2_0_0_0_camJ.tif c:\smartypants\Session_CAM\Grid_2_SMART_3.67nm\20151023144526030_2_0_0_0_camJ.tif
c:\smart_data\Session_CAM\Grid_2_SMART_3.67nm\20151023144528305_2_0_-2_1_camJ.tif c:\smartypants\Session_CAM\Grid_2_SMART_3.67nm\20151023144528305_2_0_-2_1_camJ.tif
c:\smart_data\Session_CAM\Grid_2_SMART_3.67nm\20151023144530647_2_0_-1_1_camJ.tif c:\smartypants\Session_CAM\Grid_2_SMART_3.67nm\20151023144530647_2_0_-1_1_camJ.tif
c:\smart_data\Session_CAM\Grid_2_SMART_3.67nm\20151023144532958_2_0_0_1_camJ.tif c:\smartypants\Session_CAM\Grid_2_SMART_3.67nm\20151023144532958_2_0_0_1_camJ.tif
c:\smart_data\Session_CAM\Grid_2_SMART_3.67nm\20151023144535283_2_0_1_2_camJ.tif c:\smartypants\Session_CAM\Grid_2_SMART_3.67nm\20151023144535283_2_0_1_2_camJ.tif
c:\smart_data\Session_CAM\Grid_2_SMART_3.67nm\20151023144537614_2_0_0_2_camJ.tif c:\smartypants\Session_CAM\Grid_2_SMART_3.67nm\20151023144537614_2_0_0_2_camJ.tif
c:\smart_data\Session_CAM\Grid_2_SMART_3.67nm\20151023144539930_2_0_-1_2_camJ.tif c:\smartypants\Session_CAM\Grid_2_SMART_3.67nm\20151023144539930_2_0_-1_2_camJ.tif
c:\smart_data\Session_CAM\Grid_2_SMART_3.67nm\20151023144542283_2_0_-2_2_camJ.tif c:\smartypants\Session_CAM\Grid_2_SMART_3.67nm\20151023144542283_2_0_-2_2_camJ.tif
c:\smart_data\Session_CAM\Grid_2_SMART_3.67nm\20151023144544635_2_0_-3_2_camJ.tif c:\smartypants\Session_CAM\Grid_2_SMART_3.67nm\20151023144544635_2_0_-3_2_camJ.tif
c:\smart_data\Session_CAM\Grid_2_SMART_3.67nm\20151023144546983_2_0_-4_2_camJ.tif c:\smartypants\Session_CAM\Grid_2_SMART_3.67nm\20151023144546983_2_0_-4_2_camJ.tif
c:\smart_data\Session_CAM Grid_2_SMART_4.5nm c:\smart_data\Session_CAM\Grid_2_SMART_4.5nm c:\smartypants\Session_CAM\Grid_2_SMART_4.5nm 537
c:\smart_data\Session_CAM\Grid_2_SMART_4.5nm\20151023122649716_2_0_0_0_camJ.tif c:\smartypants\Session_CAM\Grid_2_SMART_4.5nm\20151023122649716_2_0_0_0_camJ.tif
c:\smart_data\Session_CAM\Grid_2_SMART_4.5nm\20151023122652137_2_0_0_1_camJ.tif c:\smartypants\Session_CAM\Grid_2_SMART_4.5nm\20151023122652137_2_0_0_1_camJ.tif
c:\smart_data\Session_CAM\Grid_2_SMART_4.5nm\20151023122654595_2_0_1_1_camJ.tif c:\smartypants\Session_CAM\Grid_2_SMART_4.5nm\20151023122654595_2_0_1_1_camJ.tif
c:\smart_data\Session_CAM\Grid_2_SMART_4.5nm\20151023122657011_2_0_2_1_camJ.tif c:\smartypants\Session_CAM\Grid_2_SMART_4.5nm\20151023122657011_2_0_2_1_camJ.tif
c:\smart_data\Session_CAM\Grid_2_SMART_4.5nm\20151023122659369_2_0_3_1_camJ.tif c:\smartypants\Session_CAM\Grid_2_SMART_4.5nm\20151023122659369_2_0_3_1_camJ.tif
c:\smart_data\Session_CAM\Grid_2_SMART_4.5nm\20151023122701805_2_0_4_1_camJ.tif c:\smartypants\Session_CAM\Grid_2_SMART_4.5nm\20151023122701805_2_0_4_1_camJ.tif
c:\smart_data\Session_CAM\Grid_2_SMART_4.5nm\20151023122704175_2_0_5_1_camJ.tif c:\smartypants\Session_CAM\Grid_2_SMART_4.5nm\20151023122704175_2_0_5_1_camJ.tif
c:\smart_data\Session_CAM\Grid_2_SMART_4.5nm\20151023122706569_2_0_6_1_camJ.tif c:\smartypants\Session_CAM\Grid_2_SMART_4.5nm\20151023122706569_2_0_6_1_camJ.tif
c:\smart_data\Session_CAM\Grid_2_SMART_4.5nm\20151023122708980_2_0_7_1_camJ.tif c:\smartypants\Session_CAM\Grid_2_SMART_4.5nm\20151023122708980_2_0_7_1_camJ.tif
c:\smart_data\Session_CAM\Grid_2_SMART_4.5nm\20151023122711389_2_0_8_1_camJ.tif c:\smartypants\Session_CAM\Grid_2_SMART_4.5nm\20151023122711389_2_0_8_1_camJ.tif
c:\smart_data\Session_CAM\Grid_2_SMART_4.5nm\20151023122713787_2_0_9_1_camJ.tif c:\smartypants\Session_CAM\Grid_2_SMART_4.5nm\20151023122713787_2_0_9_1_camJ.tif
c:\smart_data\Session_CAM Grid_3_6_10_Stained c:\smart_data\Session_CAM\Grid_3_6_10_Stained c:\smartypants\Session_CAM\Grid_3_6_10_Stained 825
c:\smart_data\Session_CAM\Grid_3_6_10_Stained\20151023125232953_3_None_camJ.tif c:\smartypants\Session_CAM\Grid_3_6_10_Stained\20151023125232953_3_None_camJ.tif
c:\smart_data\Session_CAM\Grid_3_6_10_Stained\20151023125316332_3_0_0_0_camJ.tif c:\smartypants\Session_CAM\Grid_3_6_10_Stained\20151023125316332_3_0_0_0_camJ.tif
c:\smart_data\Session_CAM\Grid_3_6_10_Stained\20151023125318708_3_0_-1_1_camJ.tif c:\smartypants\Session_CAM\Grid_3_6_10_Stained\20151023125318708_3_0_-1_1_camJ.tif
c:\smart_data\Session_CAM\Grid_3_6_10_Stained\20151023125321098_3_0_0_1_camJ.tif c:\smartypants\Session_CAM\Grid_3_6_10_Stained\20151023125321098_3_0_0_1_camJ.tif
c:\smart_data\Session_CAM\Grid_3_6_10_Stained\20151023125323498_3_0_1_1_camJ.tif c:\smartypants\Session_CAM\Grid_3_6_10_Stained\20151023125323498_3_0_1_1_camJ.tif
c:\smart_data\Session_CAM\Grid_3_6_10_Stained\20151023125325845_3_0_1_2_camJ.tif c:\smartypants\Session_CAM\Grid_3_6_10_Stained\20151023125325845_3_0_1_2_camJ.tif
c:\smart_data\Session_CAM\Grid_3_6_10_Stained\20151023125328245_3_0_0_2_camJ.tif c:\smartypants\Session_CAM\Grid_3_6_10_Stained\20151023125328245_3_0_0_2_camJ.tif
c:\smart_data\Session_CAM\Grid_3_6_10_Stained\20151023125330640_3_0_-1_2_camJ.tif c:\smartypants\Session_CAM\Grid_3_6_10_Stained\20151023125330640_3_0_-1_2_camJ.tif
c:\smart_data\Session_CAM\Grid_3_6_10_Stained\20151023125332959_3_0_-2_2_camJ.tif c:\smartypants\Session_CAM\Grid_3_6_10_Stained\20151023125332959_3_0_-2_2_camJ.tif
c:\smart_data\Session_CAM\Grid_3_6_10_Stained\20151023125335296_3_0_-3_2_camJ.tif c:\smartypants\Session_CAM\Grid_3_6_10_Stained\20151023125335296_3_0_-3_2_camJ.tif
c:\smart_data\Session_CAM\Grid_3_6_10_Stained\20151023125337656_3_0_-4_3_camJ.tif c:\smartypants\Session_CAM\Grid_3_6_10_Stained\20151023125337656_3_0_-4_3_camJ.tif
c:\smart_data\Session_CAM Grid_5_6_9_Unstained c:\smart_data\Session_CAM\Grid_5_6_9_Unstained c:\smartypants\Session_CAM\Grid_5_6_9_Unstained 304
c:\smart_data\Session_CAM\Grid_5_6_9_Unstained\20151023134318351_5_None_camJ.tif c:\smartypants\Session_CAM\Grid_5_6_9_Unstained\20151023134318351_5_None_camJ.tif
c:\smart_data\Session_CAM\Grid_5_6_9_Unstained\20151023134813433_5_0_0_0_camJ.tif c:\smartypants\Session_CAM\Grid_5_6_9_Unstained\20151023134813433_5_0_0_0_camJ.tif
c:\smart_data\Session_CAM\Grid_5_6_9_Unstained\20151023134815761_5_0_-2_1_camJ.tif c:\smartypants\Session_CAM\Grid_5_6_9_Unstained\20151023134815761_5_0_-2_1_camJ.tif
c:\smart_data\Session_CAM\Grid_5_6_9_Unstained\20151023134818101_5_0_-1_1_camJ.tif c:\smartypants\Session_CAM\Grid_5_6_9_Unstained\20151023134818101_5_0_-1_1_camJ.tif
c:\smart_data\Session_CAM\Grid_5_6_9_Unstained\20151023134820467_5_0_0_1_camJ.tif c:\smartypants\Session_CAM\Grid_5_6_9_Unstained\20151023134820467_5_0_0_1_camJ.tif
c:\smart_data\Session_CAM\Grid_5_6_9_Unstained\20151023134822818_5_0_1_2_camJ.tif c:\smartypants\Session_CAM\Grid_5_6_9_Unstained\20151023134822818_5_0_1_2_camJ.tif
c:\smart_data\Session_CAM\Grid_5_6_9_Unstained\20151023134825176_5_0_0_2_camJ.tif c:\smartypants\Session_CAM\Grid_5_6_9_Unstained\20151023134825176_5_0_0_2_camJ.tif
c:\smart_data\Session_CAM\Grid_5_6_9_Unstained\20151023134827576_5_0_-1_2_camJ.tif c:\smartypants\Session_CAM\Grid_5_6_9_Unstained\20151023134827576_5_0_-1_2_camJ.tif
c:\smart_data\Session_CAM\Grid_5_6_9_Unstained\20151023134829912_5_0_-2_2_camJ.tif c:\smartypants\Session_CAM\Grid_5_6_9_Unstained\20151023134829912_5_0_-2_2_camJ.tif
c:\smart_data\Session_CAM\Grid_5_6_9_Unstained\20151023134832270_5_0_-3_2_camJ.tif c:\smartypants\Session_CAM\Grid_5_6_9_Unstained\20151023134832270_5_0_-3_2_camJ.tif
c:\smart_data\Session_CAM\Grid_5_6_9_Unstained\20151023134834599_5_0_-4_2_camJ.tif c:\smartypants\Session_CAM\Grid_5_6_9_Unstained\20151023134834599_5_0_-4_2_camJ.tif
c:\smart_data\Session_CAM Grid_7_16_6C c:\smart_data\Session_CAM\Grid_7_16_6C c:\smartypants\Session_CAM\Grid_7_16_6C 825
c:\smart_data\Session_CAM\Grid_7_16_6C\20151023140253249_7_None_camJ.tif c:\smartypants\Session_CAM\Grid_7_16_6C\20151023140253249_7_None_camJ.tif
c:\smart_data\Session_CAM\Grid_7_16_6C\20151023140447191_7_0_0_0_camJ.tif c:\smartypants\Session_CAM\Grid_7_16_6C\20151023140447191_7_0_0_0_camJ.tif
c:\smart_data\Session_CAM\Grid_7_16_6C\20151023140449573_7_0_-1_1_camJ.tif c:\smartypants\Session_CAM\Grid_7_16_6C\20151023140449573_7_0_-1_1_camJ.tif
c:\smart_data\Session_CAM\Grid_7_16_6C\20151023140451909_7_0_0_1_camJ.tif c:\smartypants\Session_CAM\Grid_7_16_6C\20151023140451909_7_0_0_1_camJ.tif
c:\smart_data\Session_CAM\Grid_7_16_6C\20151023140454304_7_0_1_1_camJ.tif c:\smartypants\Session_CAM\Grid_7_16_6C\20151023140454304_7_0_1_1_camJ.tif
c:\smart_data\Session_CAM\Grid_7_16_6C\20151023140456679_7_0_1_2_camJ.tif c:\smartypants\Session_CAM\Grid_7_16_6C\20151023140456679_7_0_1_2_camJ.tif
c:\smart_data\Session_CAM\Grid_7_16_6C\20151023140459118_7_0_0_2_camJ.tif c:\smartypants\Session_CAM\Grid_7_16_6C\20151023140459118_7_0_0_2_camJ.tif
c:\smart_data\Session_CAM\Grid_7_16_6C\20151023140501477_7_0_-1_2_camJ.tif c:\smartypants\Session_CAM\Grid_7_16_6C\20151023140501477_7_0_-1_2_camJ.tif
c:\smart_data\Session_CAM\Grid_7_16_6C\20151023140503841_7_0_-2_2_camJ.tif c:\smartypants\Session_CAM\Grid_7_16_6C\20151023140503841_7_0_-2_2_camJ.tif
c:\smart_data\Session_CAM\Grid_7_16_6C\20151023140506249_7_0_-3_2_camJ.tif c:\smartypants\Session_CAM\Grid_7_16_6C\20151023140506249_7_0_-3_2_camJ.tif
c:\smart_data\Session_CAM\Grid_7_16_6C\20151023140508640_7_0_-4_3_camJ.tif c:\smartypants\Session_CAM\Grid_7_16_6C\20151023140508640_7_0_-4_3_camJ.tif
c:\smart_data\Session_CAM\Grid_2_SMART
c:\smart_data\Session_CAM\Grid_2_SMART_3.67nm
c:\smart_data\Session_CAM\Grid_2_SMART_4.5nm
c:\smart_data\Session_CAM\Grid_3_6_10_Stained
c:\smart_data\Session_CAM\Grid_5_6_9_Unstained
c:\smart_data\Session_CAM\Grid_7_16_6C

















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