In [ ]:
import igv
In [ ]:
b = igv.Browser(
{"reference": {
"id": "hg19",
"fastaURL": "files/data/hg19.snippet.fasta",
"indexed": False,
"cytobandURL": "files/data/cytoband.hg19.snippet.txt",
"tracks": [
{
"name": "RefGene",
"url": "files/data/refgene.hg19.snippet.bed"
}
]
}}
)
In [ ]:
b.show()
In [ ]:
b.load_track(
{
"name": "Local VCF",
"url": "files/data/example.vcf",
"format": "vcf",
"type": "variant",
"indexed": False
})
In [ ]:
b.zoom_in()
In [ ]:
b.zoom_out()