In [1]:
import torch
import torch.nn as nn
from torch.autograd import Variable
import torch.utils.data as Data
import torchvision
import matplotlib.pyplot as plt
import sklearn
In [51]:
torch.manual_seed(1) # reproducible
# Hyper Parameters
EPOCH = 1 # train the training data n times, to save time, we just train 1 epoch
BATCH_SIZE = 50
LR = 0.001 # learning rate
DOWNLOAD_MNIST = True # set to False if you have downloaded
# Mnist digits dataset
train_data = torchvision.datasets.MNIST(
root='./mnist/',
train=True, # this is training data
transform=torchvision.transforms.ToTensor(), # Converts a PIL.Image or numpy.ndarray to
# torch.FloatTensor of shape (C x H x W) and normalize in the range [0.0, 1.0]
download=DOWNLOAD_MNIST, # download it if you don't have it
)
# plot one example
print(train_data.train_data.size()) # (60000, 28, 28)
print(train_data.train_labels.size()) # (60000)
plt.imshow(train_data.train_data[0].numpy(), cmap='gray')
plt.title('%i' % train_data.train_labels[0])
plt.show()
# Data Loader for easy mini-batch return in training, the image batch shape will be (50, 1, 28, 28)
train_loader = Data.DataLoader(dataset=train_data, batch_size=BATCH_SIZE, shuffle=True)
# convert test data into Variable, pick 2000 samples to speed up testing
test_data = torchvision.datasets.MNIST(root='./mnist/', train=False)
test_x = Variable(torch.unsqueeze(test_data.test_data, dim=1), volatile=True).type(torch.FloatTensor)[:2000]/255. # shape from (2000, 28, 28) to (2000, 1, 28, 28), value in range(0,1)
test_y = test_data.test_labels[:2000]
#test_y = Variable(test_y)
In [5]:
class CNN(nn.Module):
def __init__(self):
super(CNN, self).__init__()
self.conv1 = nn.Sequential( # input shape (1, 28, 28)
nn.Conv2d(
in_channels=1, # input height
out_channels=16, # n_filters
kernel_size=5, # filter size
stride=1, # filter movement/step
padding=2, # if want same width and length of this image after con2d, padding=(kernel_size-1)/2 if stride=1
), # output shape (16, 28, 28)
nn.PReLU(), # activation
nn.MaxPool2d(kernel_size=2), # choose max value in 2x2 area, output shape (16, 14, 14)
)
self.conv2 = nn.Sequential( # input shape (1, 28, 28)
nn.Conv2d(16, 32, 5, 1, 2), # output shape (32, 14, 14)
nn.PReLU(), # activation
nn.MaxPool2d(2), # output shape (32, 7, 7)
)
self.out = nn.Linear(32 * 7 * 7, 10) # fully connected layer, output 10 classes
def forward(self, x):
x = self.conv1(x)
x = self.conv2(x)
x = x.view(x.size(0), -1) # flatten the output of conv2 to (batch_size, 32 * 7 * 7)
output = self.out(x)
return output, x # return x for visualization
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def train():
cnn = CNN()
print(cnn) # net architecture
optimizer = torch.optim.Adam(cnn.parameters(), lr=LR) # optimize all cnn parameters
loss_func = nn.CrossEntropyLoss() # the target label is not one-hotted
# following function (plot_with_labels) is for visualization, can be ignored if not interested
# training and testing
for epoch in range(EPOCH):
for step, (x, y) in enumerate(train_loader): # gives batch data, normalize x when iterate train_loader
b_x = Variable(x) # batch x
b_y = Variable(y) # batch y
output = cnn(b_x)[0] # cnn output
loss = loss_func(output, b_y) # cross entropy loss
optimizer.zero_grad() # clear gradients for this training step
loss.backward() # backpropagation, compute gradients
optimizer.step() # apply gradients
if step % 50 == 0:
test_output, last_layer = cnn(test_x)
pred_y = torch.max(test_output, 1)[1].data.squeeze()
accuracy = sum(pred_y == test_y) / float(test_y.size(0))
print('Epoch: ', epoch, '| train loss: %.4f' % loss.data[0], '| test accuracy: %.2f' % accuracy)
# print 10 predictions from test data
test_output, _ = cnn(test_x[:10])
pred_y = torch.max(test_output, 1)[1].data.numpy().squeeze()
print(pred_y, 'prediction number')
print(test_y[:10].numpy(), 'real number')
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train()
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#save model params
torch.save(cnn.state_dict(), 'params.pkl')
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#load model
model = CNN()
model.load_state_dict(torch.load('params.pkl'))
test_output, _ = model(test_x[:2000])
pred_y = torch.max(test_output, 1)[1].data.numpy().squeeze()
print(pred_y, 'prediction number')
print(test_y[:20].numpy(), 'real number')
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#precision recall fscore support
from sklearn.metrics import precision_recall_fscore_support as score
predicted = list(pred_y)
y_test = list(test_y)
precision, recall, fscore, support = score(y_test, predicted)
print('precision: {}'.format(precision))
print('recall: {}'.format(recall))
print('fscore: {}'.format(fscore))
print('support: {}'.format(support))
In [53]:
print(__doc__)
import itertools
import numpy as np
import matplotlib.pyplot as plt
from sklearn import svm, datasets
from sklearn.model_selection import train_test_split
from sklearn.metrics import confusion_matrix
class_names = [0,1,2,3,4,5,6,7,8,9]
model = CNN()
model.load_state_dict(torch.load('params.pkl'))
test_output, _ = model(test_x[:2000])
y_pred = torch.max(test_output, 1)[1].data.numpy().squeeze()
test_y = test_y.numpy()
# Run classifier, using a model that is too regularized (C too low) to see
# the impact on the results
def plot_confusion_matrix(cm, classes,
normalize=False,
title='Confusion matrix',
cmap=plt.cm.Blues):
"""
This function prints and plots the confusion matrix.
Normalization can be applied by setting `normalize=True`.
"""
if normalize:
cm = cm.astype('float') / cm.sum(axis=1)[:, np.newaxis]
print("Normalized confusion matrix")
else:
print('Confusion matrix, without normalization')
print(cm)
plt.imshow(cm, interpolation='nearest', cmap=cmap)
plt.title(title)
plt.colorbar()
tick_marks = np.arange(len(classes))
plt.xticks(tick_marks, classes, rotation=45)
plt.yticks(tick_marks, classes)
fmt = '.2f' if normalize else 'd'
thresh = cm.max() / 2.
for i, j in itertools.product(range(cm.shape[0]), range(cm.shape[1])):
plt.text(j, i, format(cm[i, j], fmt),
horizontalalignment="center",
color="white" if cm[i, j] > thresh else "black")
plt.tight_layout()
plt.ylabel('True label')
plt.xlabel('Predicted label')
# Compute confusion matrix
cnf_matrix = confusion_matrix(test_y, y_pred)
np.set_printoptions(precision=2)
# Plot non-normalized confusion matrix
plt.figure()
plot_confusion_matrix(cnf_matrix, classes=class_names,
title='Confusion matrix, without normalization')
# Plot normalized confusion matrix
plt.figure()
plot_confusion_matrix(cnf_matrix, classes=class_names, normalize=True,
title='Normalized confusion matrix')
plt.show()