notebook.community

Edit and run 





In [1]:



    


import requests
import urllib.request
import time
from bs4 import BeautifulSoup

https://towardsdatascience.com/how-to-web-scrape-with-python-in-4-minutes-bc49186a8460





In [2]:



    


baseurl = "http://www.nanotube.msu.edu/fullerene/"
url = "http://www.nanotube.msu.edu/fullerene/fullerene-isomers.html"



    











In [3]:



    


response = requests.get(url)



    











In [4]:



    


soup = BeautifulSoup(response.text, "html.parser")



    











In [5]:



    


soup.find_all("a")



    


















    
Out[5]:








[<a href="fullerene.php?C=20">
 <img src="./C20/C20-Ih.png" width="50px"/><br/>
 <strong>C<sub>20</sub></strong></a>, <a href="fullerene.php?C=24">
 <img src="./C24/C24-D6d.png" width="50px"/><br/>
 <strong>C<sub>24</sub></strong></a>, <a href="fullerene.php?C=26">
 <img src="./C26/C26-D3h.png" width="50px"/><br/>
 <strong>C<sub>26</sub></strong></a>, <a href="fullerene.php?C=28">
 <img src="./C28/C28-Td.png" width="50px"/><br/>
 <strong>C<sub>28</sub></strong></a>, <a href="fullerene.php?C=30">
 <img src="./C30/C30-C2v-3.png" width="50px"/><br/>
 <strong>C<sub>30</sub></strong></a>, <a href="fullerene.php?C=32">
 <img src="./C32/C32-D3-6.png" width="50px"/><br/>
 <strong>C<sub>32</sub></strong></a>, <a href="fullerene.php?C=34">
 <img src="./C34/C34-C2-5.png" width="50px"/><br/>
 <strong>C<sub>34</sub></strong></a>, <a href="fullerene.php?C=36">
 <img src="./C36/C36-D6h-15.png" width="50px"/><br/>
 <strong>C<sub>36</sub></strong></a>, <a href="fullerene.php?C=38">
 <img src="./C38/C38-C2-17.png" width="50px"/><br/>
 <strong>C<sub>38</sub></strong></a>, <a href="fullerene.php?C=40">
 <img src="./C40/C40-D2-38.png" width="50px"/><br/>
 <strong>C<sub>40</sub></strong></a>, <a href="fullerene.php?C=42">
 <img src="./C42/C42-D3-45.png" width="50px"/><br/>
 <strong>C<sub>42</sub></strong></a>, <a href="fullerene.php?C=44">
 <img src="./C44/C44-D2-75.png" width="50px"/><br/>
 <strong>C<sub>44</sub></strong></a>, <a href="fullerene.php?C=46">
 <img src="./C46/C46-C2-109.png" width="50px"/><br/>
 <strong>C<sub>46</sub></strong></a>, <a href="fullerene.php?C=48">
 <img src="./C48/C48-C2-171.png" width="50px"/><br/>
 <strong>C<sub>48</sub></strong></a>, <a href="fullerene.php?C=50">
 <img src="./C50/C50-D3-270.png" width="50px"/><br/>
 <strong>C<sub>50</sub></strong></a>, <a href="fullerene.php?C=52">
 <img src="./C52/C52-D2d-313.png" width="50px"/><br/>
 <strong>C<sub>52</sub></strong></a>, <a href="fullerene.php?C=60">
 <img src="./C60/C60-Ih.png" width="50px"/><br/>
 <strong>C<sub>60</sub></strong></a>, <a href="fullerene.php?C=70">
 <img src="./C70/C70-D5h.png" width="50px"/><br/>
 <strong>C<sub>70</sub></strong></a>, <a href="fullerene.php?C=72">
 <img src="./C72/C72-D6d.png" width="50px"/><br/>
 <strong>C<sub>72</sub></strong></a>, <a href="fullerene.php?C=74">
 <img src="./C74/C74-D3h.png" width="50px"/><br/>
 <strong>C<sub>74</sub></strong></a>, <a href="fullerene.php?C=76">
 <img src="./C76/C76-D2.png" width="50px"/><br/>
 <strong>C<sub>76</sub></strong></a>, <a href="fullerene.php?C=78">
 <img src="./C78/C78-C2v-3.png" width="50px"/><br/>
 <strong>C<sub>78</sub></strong></a>, <a href="fullerene.php?C=80">
 <img src="./C80/C80-D2-2.png" width="50px"/><br/>
 <strong>C<sub>80</sub></strong></a>, <a href="fullerene.php?C=82">
 <img src="./C82/C82-C2-3.png" width="50px"/><br/>
 <strong>C<sub>82</sub></strong></a>, <a href="fullerene.php?C=84">
 <img src="./C84/C84-D6h-24.png" width="50px"/><br/>
 <strong>C<sub>84</sub></strong></a>, <a href="fullerene.php?C=86">
 <img src="./C86/C86-Cs-16.png" width="50px"/><br/>
 <strong>C<sub>86</sub></strong></a>, <a href="fullerene.php?C=90">
 <img src="./C90/C90-C2-45.png" width="50px"/><br/>
 <strong>C<sub>90</sub></strong></a>, <a href="fullerene.php?C=92">
 <img src="./C92/C92-C1-38.png" width="50px"/><br/>
 <strong>C<sub>92</sub></strong></a>, <a href="fullerene.php?C=94">
 <img src="./C94/C94-C2-133.png" width="50px"/><br/>
 <strong>C<sub>94</sub></strong></a>, <a href="fullerene.php?C=96">
 <img src="./C96/C96-D2-183.png" width="50px"/><br/>
 <strong>C<sub>96</sub></strong></a>, <a href="fullerene.php?C=98">
 <img src="./C98/C98-C2-248.png" width="50px"/><br/>
 <strong>C<sub>98</sub></strong></a>, <a href="fullerene.php?C=100">
 <img src="./C100/C100-D2-449.png" width="50px"/><br/>
 <strong>C<sub>100</sub></strong></a>, <a href="fullerene.php?C=180">
 <img src="./C180/C180-0.png" width="50px"/><br/>
 <strong>C<sub>180</sub></strong></a>, <a href="fullerene.php?C=240">
 <img src="./C240/C240-0.png" width="50px"/><br/>
 <strong>C<sub>240</sub></strong></a>, <a href="fullerene.php?C=260">
 <img src="./C260/C260-0.png" width="50px"/><br/>
 <strong>C<sub>260</sub></strong></a>, <a href="fullerene.php?C=320">
 <img src="./C320/C320-0.png" width="50px"/><br/>
 <strong>C<sub>320</sub></strong></a>, <a href="fullerene.php?C=500">
 <img src="./C500/C500-0.png" width="50px"/><br/>
 <strong>C<sub>500</sub></strong></a>, <a href="fullerene.php?C=540">
 <img src="./C540/C540-0.png" width="50px"/><br/>
 <strong>C<sub>540</sub></strong></a>, <a href="fullerene.php?C=720">
 <img src="./C720/C720-0.png" width="50px"/><br/>
 <strong>C<sub>720</sub></strong></a>, <a href="http://www3.clustrmaps.com/user/06311d544"><img alt="Locations of visitors to this page" src="http://www3.clustrmaps.com/stats/maps-no_clusters/www.nanotube.msu.edu-fullerene-fullerene-isomers.html-thumb.jpg">
 </img></a>, <a href="http://accelrys.com/products/datasheets/discovery-studio-visualizer.pdf">
 Discovery Studio Visualizer</a>, <a href="http://journals.aps.org/prb/abstract/10.1103/PhysRevB.90.245403">
 Phys. Rev. B <b>90</b>, 245403 (2014)</a>, <a href="http://www.nanotube.msu.edu/fullerene/fullerene-isomers.html">
 http://www.nanotube.msu.edu/fullerene/fullerene-isomers.html</a>, <a href="http://www.pa.msu.edu/people/tomanek/">David Tomanek</a>, <a href="http://www.msu.edu/">Michigan State University</a>, <a href="http://www.pa.msu.edu/people/tomanek/CNL.html">
 Computational Nanotechnology Lab</a>, <a href="http://www.pa.msu.edu/people/tomanek/GNJ/SI/fullerene-isomer/index.html">
 Supplementary Information</a>, <a href="http://www.pa.msu.edu/people/tomanek/GNJ/">
 Guide through the Nanocarbon Jungle:
 Buckyballs, Nanotubes, Graphene, and Beyond</a>, <a href="mailto:frede123@msu.edu">Nick Frederick</a>]

















In [35]:



    


for item in soup.find_all("a"):
    time.sleep(1)
    
    href = item["href"]
    print("\n--->", href)
    if href[:15] != "fullerene.php?C":
        continue
    fullerene_page = requests.get(baseurl + href)
    fullerene_soup = BeautifulSoup(fullerene_page.text, "html.parser")
    
    files = list()
    for structure in fullerene_soup.find_all("a"):
        s_href = structure["href"]
        if ".xyz" == s_href[-4:]:
            filename = s_href.split("/")[-1]
            if filename in files:
                continue
            files.append(filename)
            print("Download: ", filename)
            urllib.request.urlretrieve(baseurl + s_href[1:], filename)
            time.sleep(1)



    


















    






---> fullerene.php?C=20
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---> fullerene.php?C=24
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---> fullerene.php?C=26
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---> fullerene.php?C=28
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---> fullerene.php?C=30
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---> fullerene.php?C=32
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---> fullerene.php?C=34
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---> fullerene.php?C=36
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---> fullerene.php?C=38
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---> fullerene.php?C=40
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---> fullerene.php?C=42
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---> fullerene.php?C=44
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---> fullerene.php?C=46
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---> fullerene.php?C=48
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---> fullerene.php?C=94
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---> fullerene.php?C=180
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---> fullerene.php?C=240
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---> fullerene.php?C=260
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---> fullerene.php?C=320
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---> fullerene.php?C=500
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---> fullerene.php?C=540
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---> fullerene.php?C=720
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---> http://www3.clustrmaps.com/user/06311d544

---> http://accelrys.com/products/datasheets/discovery-studio-visualizer.pdf

---> http://journals.aps.org/prb/abstract/10.1103/PhysRevB.90.245403

---> http://www.nanotube.msu.edu/fullerene/fullerene-isomers.html

---> http://www.pa.msu.edu/people/tomanek/

---> http://www.msu.edu/

---> http://www.pa.msu.edu/people/tomanek/CNL.html

---> http://www.pa.msu.edu/people/tomanek/GNJ/SI/fullerene-isomer/index.html

---> http://www.pa.msu.edu/people/tomanek/GNJ/

---> mailto:frede123@msu.edu

















In [37]:



    


import os
import shutil
for file in os.listdir():
    if file[-4:] == ".xyz":
        folder = file.split("-")[0]
        if not os.path.exists(folder):
            os.mkdir(folder)
        shutil.move(file, folder)

Content source: gVallverdu/cookbook

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