In [14]:

    

import networkx as nx
import matplotlib.pyplot as plt

G = nx.read_graphml('datasets/test.graphml')
nx.draw(G)
plt.show()


    

    




C:\dev\apps\Anaconda3\lib\site-packages\networkx\drawing\nx_pylab.py:126: MatplotlibDeprecationWarning:

pyplot.hold is deprecated.
    Future behavior will be consistent with the long-time default:
    plot commands add elements without first clearing the
    Axes and/or Figure.

C:\dev\apps\Anaconda3\lib\site-packages\networkx\drawing\nx_pylab.py:138: MatplotlibDeprecationWarning:

pyplot.hold is deprecated.
    Future behavior will be consistent with the long-time default:
    plot commands add elements without first clearing the
    Axes and/or Figure.

C:\dev\apps\Anaconda3\lib\site-packages\matplotlib\__init__.py:917: UserWarning:

axes.hold is deprecated. Please remove it from your matplotlibrc and/or style files.

C:\dev\apps\Anaconda3\lib\site-packages\matplotlib\rcsetup.py:152: UserWarning:

axes.hold is deprecated, will be removed in 3.0







    

In [15]:

    

import plotly.plotly as py
from plotly.graph_objs import *

import plotly
plotly.offline.plot()bb

import networkx as nx

G=nx.random_geometric_graph(200,0.125)
pos=nx.get_node_attributes(G,'pos')

dmin=1
ncenter=0
for n in pos:
    x,y=pos[n]
    d=(x-0.5)**2+(y-0.5)**2
    if d<dmin:
        ncenter=n
        dmin=d

p=nx.single_source_shortest_path_length(G,ncenter)


    

    




---------------------------------------------------------------------------
TypeError                                 Traceback (most recent call last)
<ipython-input-15-f61c6d700aff> in <module>()
      4 
      5 import plotly
----> 6 plotly.offline.plot()
      7 
      8 import networkx as nx

TypeError: plot() missing 1 required positional argument: 'figure_or_data'

In [ ]:

    

edge_trace = Scatter(
    x=[],
    y=[],
    line=Line(width=0.5,color='#888'),
    hoverinfo='none',
    mode='lines')

for edge in G.edges():
    x0, y0 = G.node[edge[0]]['pos']
    x1, y1 = G.node[edge[1]]['pos']
    edge_trace['x'] += [x0, x1, None]
    edge_trace['y'] += [y0, y1, None]

node_trace = Scatter(
    x=[],
    y=[],
    text=[],
    mode='markers',
    hoverinfo='text',
    marker=Marker(
        showscale=True,
        # colorscale options
        # 'Greys' | 'Greens' | 'Bluered' | 'Hot' | 'Picnic' | 'Portland' |
        # Jet' | 'RdBu' | 'Blackbody' | 'Earth' | 'Electric' | 'YIOrRd' | 'YIGnBu'
        colorscale='YIGnBu',
        reversescale=True,
        color=[],
        size=10,
        colorbar=dict(
            thickness=15,
            title='Node Connections',
            xanchor='left',
            titleside='right'
        ),
        line=dict(width=2)))

for node in G.nodes():
    x, y = G.node[node]['pos']
    node_trace['x'].append(x)
    node_trace['y'].append(y)


    

In [ ]:

    

for node, adjacencies in enumerate(G.adjacency_list()):
    node_trace['marker']['color'].append(len(adjacencies))
    node_info = '# of connections: '+str(len(adjacencies))
    node_trace['text'].append(node_info)


    

In [ ]:

    

fig = Figure(data=Data([edge_trace, node_trace]),
             layout=Layout(
                title='<br>Network graph made with Python',
                titlefont=dict(size=16),
                showlegend=False,
                hovermode='closest',
                margin=dict(b=20,l=5,r=5,t=40),
                annotations=[ dict(
                    text="Python code: <a href='https://plot.ly/ipython-notebooks/network-graphs/'> https://plot.ly/ipython-notebooks/network-graphs/</a>",
                    showarrow=False,
                    xref="paper", yref="paper",
                    x=0.005, y=-0.002 ) ],
                xaxis=XAxis(showgrid=False, zeroline=False, showticklabels=False),
                yaxis=YAxis(showgrid=False, zeroline=False, showticklabels=False)))

py.iplot(fig, filename='networkx')


    

In [18]:

    

import plotly.plotly as py
import plotly
plotly.offline()
from plotly.graph_objs import *

trace0 = Scatter(
    x=[1, 2, 3, 4],
    y=[10, 15, 13, 17]
)
trace1 = Scatter(
    x=[1, 2, 3, 4],
    y=[16, 5, 11, 9]
)
data = Data([trace0, trace1])

py.plot(data, filename = 'basic-line')


    

    




---------------------------------------------------------------------------
TypeError                                 Traceback (most recent call last)
<ipython-input-18-769dbdacec9a> in <module>()
      1 import plotly.plotly as py
      2 import plotly
----> 3 plotly.offline()
      4 from plotly.graph_objs import *
      5 

TypeError: 'module' object is not callable