gb to bed

In [1]:

    

import Utilities


    

In [3]:

    

from Utilities import gb_to_bed


    

In [4]:

    

gb_to_bed ('pBR322.gb', 'pBR322')


    

    




50 features to be parsed

In [6]:

    

cat pBR322.bed


    

    




track name=J01749.1 description="pBR322" visibility=2 colorByStrand="255,0,0 0,0,255"
J01749.1	85	1276	tet	1000	+	
J01749.1	85	1276	tet	1000	+	
J01749.1	145	147	tet	1000	+	
J01749.1	410	414	tet	1000	+	
J01749.1	425	426	tet	1000	+	
J01749.1	468	472	tet	1000	+	
J01749.1	525	528	tet	1000	+	
J01749.1	3292	4153	bla	1000	-	
J01749.1	3292	4153	bla	1000	-	
J01749.1	4084	4153	bla	1000	-	
J01749.1	3295	4084	bla	1000	-