In [1]:
import os
import Bio
import re
import timeit
import copy
import sys
from Bio import SeqIO
from Bio.Blast import NCBIXML
from Bio import Restriction
from Bio.Restriction import *
from Bio.Alphabet.IUPAC import IUPACAmbiguousDNA
from Bio.Seq import Seq
from Bio.SeqRecord import SeqRecord
from Bio.Blast.Applications import NcbiblastnCommandline
from Bio import SeqFeature
from Bio.SeqFeature import *
import pandas
import cPickle as pickle
from numpy import *
from pylab import *
In [25]:
cutslistdict = {}
for item in cutslist:
cutslistdict[str(item.seq)] = item.description
In [79]:
# Load in the BLAST results
result_handle = open("../HiSeqOut/alltgts_ADL2_less_stringent_eval.blast")
ecoli_hits_blast = NCBIXML.parse(result_handle) # use NCBIXML.parse(result_handle) for multiple queries here
In [85]:
ehb_list = []
for i in range(5):
ehb_list.append(next(ecoli_hits_blast))
In [126]:
a_goodguides = []
b_MBNerrors = []
c_15match_guides = []
whittlinglist = []
import multiprocessing
import time
# IF: a blast entry has a score of >20 and is in the theoretical guides list, put into a_guideslist.
# ELSEIF: a blast entry has a score of >20 but isn't in the guides list, put into b_MBNerrors.
# Otherwise, put into a list to be dealt with and meted out later.
def splitme(item):
try:
if item.alignments[0].hsps[0].score > 19:
try:
#a_goodguides.append((cutslistdict[item.alignments[0].hsps[0].query[0:20]], item.alignments[0].hsps[0].query[0:20]))
return "A"
except:
return "wtf"
elif item.alignments[0].hsps[0].score > 14:
try:
#c_15match_guides.append((cutslistdict[item.alignments[0].hsps[0].query[0:20]], b_MBNerrors[3].alignments[0].hsps[0].query[0:20]))
return "C"
except:
#b_MBNerrors.append(item)
return "B"
else:
#whittlinglist.append(item)
return "w"
except:
#whittlinglist.append(item)
return "w"
In [2]:
%run "../al_funcs.ipynb"
In [3]:
handle = open("../../../Genomic Data/Escherichia coli str. K-12 substr. MG1655, complete genome.fasta", 'rb')
ecoligenome = SeqIO.parse(handle, "fasta", alphabet=IUPACAmbiguousDNA())
ecoligenomedict = {}
ecoligenomedict["gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome"] = next(ecoligenome)
In [4]:
import timeit
In [43]:
handle = open("../../../Genomic Data/Escherichia coli str. K-12 substr. MG1655, complete genome.fasta", 'rb')
ecoligenome = [item for item in SeqIO.parse(handle, "fasta", alphabet=IUPACAmbiguousDNA())]
ecoliguides = al_digesttarget(ecoligenome)
In [44]:
ecoliguidesshort = []
for item in range(1000):
ecoliguidesshort.append(next(ecoliguides))
In [15]:
'''
if __name__=='__main__':
from timeit import Timer
t = Timer(lambda: pool.map(mapfunc, ecoliguidesshort))
print t.timeit(number=1)
'''
14.3535060883
In [17]:
# http://stackoverflow.com/questions/13499824/using-python-map-function-with-keyword-arguments
# https://medium.com/@thechriskiehl/parallelism-in-one-line-40e9b2b36148
from functools import partial
mapfunc = partial(al_scoreguide, genome="ecolik12", genomedict = ecoligenomedict)
pool = multiprocessing.Pool(4)
results = pool.map(mapfunc, ecoliguides)
pool.close()
In [48]:
from functools import partial
mapfunc = partial(al_scoreguide, genome="ecolik12", genomedict = ecoligenomedict)
pool = multiprocessing.Pool(4)
results = pool.map(mapfunc, ecoliguidesshort)
pool.close()
In [54]:
al_scoreguide_multithreaded(ecoliguidesshort[0], genome="ecolik12", genomedict = ecoligenomedict)
Out[54]:
(100,
[[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2584093,
u'TCGCCGCCGCCCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2740545,
u'CGCCGCCGCCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
555915,
u'CGCCGCCGCCCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2586316,
u'GACTCGCCGCCGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3716775,
u'CGCCGCCGCCCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3977201,
u'ACTCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4364062,
u'GCCGCCGCCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
14414,
u'CGCCGCCGCCCA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
453304,
u'CGCCGCCGCCCA')],
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(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
767062,
u'CCGCCGCCCAGC')],
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(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
878913,
u'ACTCGCCGCCGC')],
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(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
915213,
u'TCGCCGCCGCCC')],
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(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1080923,
u'TCGCCGCCGCCC')],
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(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
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u'ACTCGCCGCCGC')],
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(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1831213,
u'CCGCCGCCCAGC')],
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(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2126529,
u'CTCGCCGCCGCC')],
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(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
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u'TCGCCGCCGCCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
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u'CCGCCGCCCAGC')],
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(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
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u'TCGCCGCCGCCC')],
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(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
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u'CGCCGCCGCCCA')],
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(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
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u'GCCGCCGCCCAG')],
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(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
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u'TCGCCGCCGCCC')],
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(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
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u'CGCCGCCGCCCA')],
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(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4099853,
u'CGCCGCCGCCCA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4299598,
u'CCGCCGCCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
49700,
u'GGACTCGCCGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
57420,
u'GCCGCCGCCCA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
136202,
u'TCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
210921,
u'TCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
283501,
u'TCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
351890,
u'CCGCCGCCCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
424467,
u'GCCGCCGCCCA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
460040,
u'CGCCGCCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
535914,
u'CCGCCGCCCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
542632,
u'CGCCGCCGCCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
553754,
u'TCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
623961,
u'TCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
822887,
u'CGCCGCCGCCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
841439,
u'ACTCGCCGCCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
882657,
u'CGCCGCCGCCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
897324,
u'TCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
901620,
u'TCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
917181,
u'CTCGCCGCCGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1111804,
u'TCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1122578,
u'CCGCCGCCCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1273042,
u'CTCGCCGCCGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1337480,
u'CTCGCCGCCGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1493869,
u'TCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1550188,
u'TCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1593966,
u'CGCCGCCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1917064,
u'CGCCGCCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1948027,
u'TCGCCACCGCCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1956032,
u'CCGCCGCCCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1973678,
u'CTCGCCGCCGGCCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1985423,
u'CGCCGCCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2091314,
u'TCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2126998,
u'TCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2184337,
u'CGCCGCCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2252951,
u'TCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2256587,
u'CTCGCCGCCGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2325150,
u'GGGACTCGCCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2354297,
u'GCCGCCGCCCA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2441034,
u'TCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2645526,
u'TCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2659336,
u'ACTCGCCGCCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2936130,
u'CGCCGCCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2945704,
u'CCGCCGCCCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3032459,
u'CGCCGCCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3045305,
u'CTCGCCGCCGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3071598,
u'TCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3150534,
u'CTCGCCGCCGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3200881,
u'CGCCGCCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3335765,
u'TCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3629316,
u'CGCCGCCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3771430,
u'ACTCGCCGCCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3813389,
u'TCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3852123,
u'CCGCCGCCCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4029991,
u'GCCGCCGCCCA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4173520,
u'TCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4402210,
u'CCGCCGCCCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4411498,
u'CCGCCGCCCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4457635,
u'TCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4524395,
u'CGCCGCCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4589596,
u'CGCCGCCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4606807,
u'CTCGCCGCCGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4628036,
u'GACTCGCCGCC')]])
In [52]:
len(results)
Out[52]:
1000
In [19]:
sum([score for score, details in results])/len([score for score, details in results])
Out[19]:
97
In [20]:
results[0:10]
Out[20]:
[(100,
[[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2584093,
u'TCGCCGCCGCCCAG')],
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(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2740545,
u'CGCCGCCGCCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
555915,
u'CGCCGCCGCCCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2586316,
u'GACTCGCCGCCGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3716775,
u'CGCCGCCGCCCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3977201,
u'ACTCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4364062,
u'GCCGCCGCCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
14414,
u'CGCCGCCGCCCA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
453304,
u'CGCCGCCGCCCA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
767062,
u'CCGCCGCCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
878913,
u'ACTCGCCGCCGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
915213,
u'TCGCCGCCGCCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1080923,
u'TCGCCGCCGCCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1690383,
u'ACTCGCCGCCGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1831213,
u'CCGCCGCCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2126529,
u'CTCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2229190,
u'TCGCCGCCGCCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2379223,
u'CCGCCGCCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2604157,
u'TCGCCGCCGCCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3180158,
u'CGCCGCCGCCCA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3294815,
u'GCCGCCGCCCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3345957,
u'TCGCCGCCGCCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3909234,
u'CGCCGCCGCCCA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4099853,
u'CGCCGCCGCCCA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4299598,
u'CCGCCGCCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
49700,
u'GGACTCGCCGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
57420,
u'GCCGCCGCCCA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
136202,
u'TCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
210921,
u'TCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
283501,
u'TCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
351890,
u'CCGCCGCCCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
424467,
u'GCCGCCGCCCA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
460040,
u'CGCCGCCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
535914,
u'CCGCCGCCCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
542632,
u'CGCCGCCGCCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
553754,
u'TCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
623961,
u'TCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
822887,
u'CGCCGCCGCCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
841439,
u'ACTCGCCGCCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
882657,
u'CGCCGCCGCCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
897324,
u'TCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
901620,
u'TCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
917181,
u'CTCGCCGCCGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1111804,
u'TCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1122578,
u'CCGCCGCCCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1273042,
u'CTCGCCGCCGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1337480,
u'CTCGCCGCCGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1493869,
u'TCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1550188,
u'TCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1593966,
u'CGCCGCCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1917064,
u'CGCCGCCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1948027,
u'TCGCCACCGCCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1956032,
u'CCGCCGCCCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1973678,
u'CTCGCCGCCGGCCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1985423,
u'CGCCGCCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2091314,
u'TCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2126998,
u'TCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2184337,
u'CGCCGCCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2252951,
u'TCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2256587,
u'CTCGCCGCCGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2325150,
u'GGGACTCGCCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2354297,
u'GCCGCCGCCCA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2441034,
u'TCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2645526,
u'TCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2659336,
u'ACTCGCCGCCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2936130,
u'CGCCGCCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2945704,
u'CCGCCGCCCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3032459,
u'CGCCGCCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3045305,
u'CTCGCCGCCGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3071598,
u'TCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3150534,
u'CTCGCCGCCGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3200881,
u'CGCCGCCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3335765,
u'TCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3629316,
u'CGCCGCCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3771430,
u'ACTCGCCGCCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3813389,
u'TCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3852123,
u'CCGCCGCCCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4029991,
u'GCCGCCGCCCA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4173520,
u'TCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4402210,
u'CCGCCGCCCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4411498,
u'CCGCCGCCCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4457635,
u'TCGCCGCCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4524395,
u'CGCCGCCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4589596,
u'CGCCGCCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4606807,
u'CTCGCCGCCGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4628036,
u'GACTCGCCGCC')]]),
(100,
[[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
619847,
u'TTGCGCCAGCGGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2175586,
u'ATTGCGCCAGCGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2970065,
u'TGCGCCAGCGGGA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4030127,
u'TGCGCCAGCGGGA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4621818,
u'AATTGCGCCAGCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4622979,
u'TGCGCCAGCGGGA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4625691,
u'TGCGCCAGCGGGA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
75818,
u'ATTGCGCCAGCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
132316,
u'CGCCAGCGGGAA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
445540,
u'ATTGCGCCAGCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
632585,
u'AATTGCGCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
795538,
u'GCCAGCGGGAAC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
834300,
u'ATTGCGCCAGCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
886006,
u'CGCCAGCGGGAA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1267256,
u'CGCCAGCGGGAA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1558536,
u'TGCGCCAGCGGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1665070,
u'ATTGCGCCAGCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1722181,
u'ATTGCGCCAGCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1959130,
u'TGCGCCAGCGGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2001257,
u'TGCGCCAGCGGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2280317,
u'TGCGCCAGCGGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2633005,
u'TTGCGCCAGCGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2793565,
u'CGCCAGCGGGAA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2972358,
u'TGCGCCAGCGGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3109891,
u'TTGCGCCAGCGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3211932,
u'ATTGCGCCAGCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3274582,
u'GCCAGCGGGAAC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3276769,
u'CGCCAGCGGGAA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3644236,
u'AATTGCGCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3822911,
u'TGCGCCAGCGGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4006365,
u'TTGCGCCAGCGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4140183,
u'AATTGCGCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4563964,
u'AATTGCGCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4581703,
u'TTGCGCCAGCGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4605486,
u'ATTGCGCCAGCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
132772,
u'TTGCGCCAGCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
146093,
u'AATTGCGCCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
159901,
u'TGCGCCAGCTGGAAC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
165718,
u'GCCAGCGGGAA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
170202,
u'TGCGCCAGCGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
277581,
u'TGCGCCAGCGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
360065,
u'AATTGCGCCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
486923,
u'TTGCGCCAGCTGGAA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
628463,
u'TTGCGCCAGCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
634331,
u'TTGCGCCAGCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
654460,
u'ATTGCGCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
673978,
u'TGCGCCAGCGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
723855,
u'TGCGCCAGCGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
728310,
u'CGCCAGCGGGA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
745734,
u'TTGCGCCAGCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
844289,
u'GCCAGCGGGAA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
854155,
u'ATTGCGCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
864475,
u'GCCAGCGGGAA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
920592,
u'TTGCGCCAGCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1007301,
u'AATTGCGCCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1072130,
u'GCCAGCGGGAA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1076535,
u'GCCAGCGGGAA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1107352,
u'TTGCGCCAGCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1177946,
u'CGCCAGCGGGA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1190987,
u'GCCAGCGGGAA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1260663,
u'CGCCAGCGGGA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1277323,
u'AATTGCGCCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1513233,
u'GCGCCAGCGGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1686314,
u'GCCAGCGGGAA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1791215,
u'GCGCCAGCGGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1874549,
u'CGCCAGCGGGA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1969404,
u'AATTGCGCCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1989541,
u'TTGCGCCAGCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2138635,
u'TGCGCCAGCGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2193461,
u'TTGCGCCAGCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2218319,
u'AATTGCGCCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2225930,
u'CCAGCGGGAAC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2240913,
u'TGCGCCAGCGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2241268,
u'AATTGCGCCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2303448,
u'TTGCGCCAGCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2330582,
u'TGCGCCAGCGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2376869,
u'CGCCAGCGGGA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2411588,
u'CGCCAGCGGGA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2536777,
u'TGCGCCAGCGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2688979,
u'ATTGCGCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2772689,
u'TGCGCCAGCGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2789609,
u'GCGCCAGCGGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2826693,
u'TGCGCCAGCGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2877903,
u'GCGCCAGCGGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2877964,
u'GCGCCAGCGGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2878025,
u'GCGCCAGCGGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2878086,
u'GCGCCAGCGGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2878147,
u'GCGCCAGCGGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2878209,
u'GCGCCAGCGGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2878271,
u'GCGCCAGCGGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2878332,
u'GCGCCAGCGGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2878393,
u'GCGCCAGCGGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2878454,
u'GCGCCAGCGGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2898967,
u'TGCGCCAGCGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2904032,
u'GCGCCAGCGGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2904093,
u'GCGCCAGCGGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2904154,
u'GCGCCAGCGGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2904215,
u'GCGCCAGCGGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2904276,
u'GCGCCAGCGGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2904337,
u'GCGCCAGCGGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2904398,
u'GCGCCAGCGGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2918450,
u'CGCCAGCGGGA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2941170,
u'GCCAGCGGGAA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3082096,
u'ATTGCGCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3123691,
u'AATTGCGCCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3163908,
u'AATTGCGCCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3205926,
u'ATTGCGCCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3240691,
u'CCAGCGGGAAC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3374405,
u'GCGCCAGCGGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3416774,
u'GCGCCAGCGGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3431148,
u'GCCAGCGGGAA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3506898,
u'CCAGCGGGAAC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3507788,
u'AATTGCGCCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3525689,
u'TGCGCCAGCGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3563935,
u'AATTGCGCCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3671462,
u'CGCCAGCGGGA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3678020,
u'GCGCCAGCGGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3692140,
u'TTGCGCCAGCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3714623,
u'TGCGCCAGCGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3761583,
u'CGCCAGCGGGA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3880667,
u'CGCCAGCGGGA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3952818,
u'CGCCAGCGGGA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4070217,
u'TGCGCCAGCGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4106726,
u'TTGCGCCAGCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4202323,
u'CGCCAGCGGGA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4238836,
u'TTGCGCCAGCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4273488,
u'CGCCAGCGGGA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4338684,
u'TGCGCCAGCGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4465737,
u'TTGCGCCAGCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4486655,
u'TTGCGCCAGCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4559719,
u'TGCGCCAGCGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4569469,
u'CCAGCGGGAAC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4632168,
u'GCCAGCGGGAA')]]),
(100,
[[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
42701,
u'GTTTGTTGCGGCAGTGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1326567,
u'AGTTTGTTGGGGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2516473,
u'TTGTTGGGGCAGT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1373380,
u'GTTTGTTGGGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2279584,
u'GTTGGGGCAGT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2342958,
u'AGTTTGTTGGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2765341,
u'GTTGGGGCAGT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2943735,
u'AGTTTGTTGGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2956552,
u'TGTTGGGGCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4554287,
u'TTTGTTGGCGCAGTG')]]),
(100,
[[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3657833,
u'AGCGTTGATGCTAT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2268511,
u'CAGCGTTGATGCT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2790569,
u'CAGCGTTGATGCT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
97516,
u'GCGTTGATGCTA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
673019,
u'GTTGATGCTATC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1353916,
u'CAGCGTTGATGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1910630,
u'GCAGCGTTGATG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2209915,
u'CAGCGTTGATGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2967826,
u'CAGCGTTGATGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4237877,
u'AGCGCAGCGTTG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
95548,
u'TTGATGCTATC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
388315,
u'CAGCGTTGATG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
493431,
u'AGCGCAGCGTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
532767,
u'CGCAGCGTTGA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
644276,
u'AGCGGAGCGTTGATG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
660739,
u'GCGCAGCGTTG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
706537,
u'CGCAGCGTTGA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
841381,
u'GCGTTGATGCT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
857046,
u'GCAGCGTTGAT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
869460,
u'CAGCGTTGATG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
978572,
u'CAGCGTTGATG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1392155,
u'GCGCAGCGTTG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1553506,
u'CAGCGTTGATG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2037890,
u'TTGATGCTATC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2158729,
u'GCAGCGTTGAT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2415860,
u'CAGCGTTGATG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2453112,
u'CAGCGTTGATG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2617715,
u'GCGCAGCGTTG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2692350,
u'TTGATGCTATC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2735804,
u'CAGCGTTGATG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2895160,
u'GCGTTGATGCT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3099432,
u'TTGATGCTATC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3232955,
u'AGCGCAGCGTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3351376,
u'CAGCGTTGATG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3451009,
u'GCGTTGATGCT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3485473,
u'GCGTTGATGCT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3513269,
u'CAGCGTTGATG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3548412,
u'GCGCAGCGTTG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3662609,
u'CGCAGCGTTGA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3693564,
u'CAGCGTTGATG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4214874,
u'GCAGCGTTGAT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4529675,
u'TTGATGCTATC')]]),
(100,
[[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1631156,
u'CGATCGCCATTATG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1550210,
u'CGATCGCCATTAT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4530078,
u'TGTCGATCGCCAT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
95289,
u'ATCGCCATTATG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
484362,
u'GATCGCCATTAT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
502641,
u'ATCGCCATTATG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
895648,
u'ATCGCCATTATG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1497462,
u'TGTCGATCGCCA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1943663,
u'TGTCGATCGCCA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2172296,
u'ATGTCGATCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2268358,
u'TGTCGATCGCCA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2325923,
u'CGATCGCCATTA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2359156,
u'CGATCGCCATTA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2840404,
u'TCGCCATTATGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3018500,
u'TCGCCATTATGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3364106,
u'GATCGCCATTAT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3696554,
u'GTCGATCGCCAT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3806706,
u'ATCGCCATTATG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3904605,
u'CGCCATTATGGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3935455,
u'CGCCATTATGGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
73271,
u'GATCGCCATTA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
145546,
u'GTCGATCGCCA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
176559,
u'ATCGCCATTAT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
328600,
u'ATGTCGATCGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
384429,
u'TCGATCGCCAT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
709821,
u'GCCATTATGGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
845171,
u'CGCCATTATGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1161740,
u'ATCGCCATTAT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1251336,
u'GATCGCCATTA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1711830,
u'TCGCCATTATG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1728688,
u'CGCCATTATGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1762423,
u'CGCCATTATGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1832609,
u'GCCATTATGGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2008494,
u'GATCGCCATTA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2021579,
u'ATCGCCATTAT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2022793,
u'ATCGCCATTAT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2253516,
u'GATCGCCATTA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2375623,
u'GATCGCCATTA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2433151,
u'ATGTCGATCGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2632040,
u'GCCATTATGGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2678702,
u'CGCCATTATGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2685991,
u'GATCGCCATTA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2800817,
u'ATGTCGATCGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2889799,
u'TGTCGATCGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3090744,
u'CGATCGCCATT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3208072,
u'ATCGCCATTAT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3238629,
u'TCGCCATTATG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3575316,
u'GATCGCCATTA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3626652,
u'CGATCGCCATT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3806024,
u'TCGCCATTATG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3928404,
u'CGCCATTATGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4164529,
u'CGATCCCCATTATGG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4473644,
u'CGATCGCCATT')]]),
(100,
[[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
24362,
u'ACCGCGCGCTTC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
205704,
u'ACCGCGCGCTTC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1366997,
u'CCGCGCGCTTCT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4261979,
u'CCGCGCGCTTCT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
66516,
u'GCTTCTAATAC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
122746,
u'CGCGCGCTTCT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
425751,
u'ACCGCGCGCTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
644658,
u'CGCGCGCTTCT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
958654,
u'GCGCGCTTCTA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1439173,
u'GCGCGCTTCTA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1496140,
u'ACCGCGCGCTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1888083,
u'CCGCGCGCTTC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2115819,
u'CCGCGCGCTTC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2300789,
u'ACCGCGCGCTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3057959,
u'CCGCGCGCTTC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3080939,
u'CGCGCGCTTCT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3235228,
u'CGCGCGCTTCT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3635875,
u'CGCTTCTAATA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3958200,
u'CGCGCGCTTCT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4566780,
u'ACCGCGCGCTT')]]),
(100,
[[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2342901,
u'CAACGTTACTGTTA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
404427,
u'CAACGTTACTGATTATCGAT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4331550,
u'ACGTTACTGTTA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
236539,
u'TTACTGTTATC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
271285,
u'CTGTTATCGAT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
893116,
u'TGTTATCGATC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1069635,
u'ACGTTACTGTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1398596,
u'TGTTATCGATC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1470040,
u'CTGTTATCGAT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1658842,
u'TGTTATCGATC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2310722,
u'TGTTATCGATC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2373267,
u'CAACGTTACTG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2836723,
u'CGTTACTGTTA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2947870,
u'CAACGTTACTG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3296373,
u'TGTTATCGATC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4507935,
u'CTGTTATCGAT')]]),
(100,
[[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
831963,
u'CAGCAGTTTTTCGA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1835813,
u'ACTGCCAGCAGTTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1972887,
u'CAGCAGTTTTTCGA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3059956,
u'TGCCAGCAGTTTTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
718764,
u'AGCAGTTTTTCGA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
903356,
u'CCAGCAGTTTTTC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1273159,
u'GCCAGCAGTTTTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1295722,
u'TGCCAGCAGTTTCTCGA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1302305,
u'GCCAGCAGTTTTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2176037,
u'CTGCCAGCAGTTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2513244,
u'AGCAGTTTTTCGA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2732494,
u'CAGCAGTTTTTCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3774487,
u'CTGCCAGCAGTTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
124328,
u'GCAGTTTTTCGA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
351398,
u'CCAGCAGTTTTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
364433,
u'CAGCAGTTTTTC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
461063,
u'CTGCCAGGAGTTTTTC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1054768,
u'CTGCCAGCAGTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2337997,
u'AGCAGTTTTTCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2386206,
u'CTGCCAGCAGTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2622939,
u'CCAGCAGTTTTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2695481,
u'TGCCAGCAGTTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2769915,
u'ACTGCCAGCAGT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2839916,
u'TGCCAGCAGTTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2891564,
u'AGCAGTTTTTCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2925995,
u'CAGCAGTTTTTC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2936063,
u'CAGCAGTTTTTC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3071152,
u'ACTGCCAGCAGT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3096990,
u'CCAGCAGTTTTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3394390,
u'CAGCAGTTTTTC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3447288,
u'CCAGCAGTTTTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3495548,
u'GCCAGCAGTTCTTCGA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3545674,
u'TGCCAGCAGTTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3774183,
u'CTGCCAGCAGTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3879045,
u'CTGCCAGCAGTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3914457,
u'CAGCAGTTTTTC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4121995,
u'ACTGCCAGCAGT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4159065,
u'CAGCAGTTTTTC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4314896,
u'CCAGCAGTTTTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4322103,
u'AGCAGTTTTTCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4590210,
u'GCCAGCAGTTTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
350433,
u'GCCAGCAGTTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
423076,
u'GCAGTTTTTCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
448704,
u'CAGTTTTTCGA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
450849,
u'CAGTTTTTCGA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
472093,
u'TGCCAGCAGTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
509440,
u'ACTGCCAGCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
522587,
u'CAGCAGTTTTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
534967,
u'ACTGCCAGCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
614085,
u'CTGCCAGCAGT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
645628,
u'ACTGCCAGCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
698039,
u'GCCAGCAGTTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
724018,
u'CCAGCAGTTCTTCGA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
756282,
u'AGTTTTTCGAC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
846215,
u'CCAGCAGTTTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1083196,
u'TGCCAGCAGTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1127097,
u'CTGCCAGCGGTTTATCGAC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1155803,
u'CAGTTTTTCGA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1168388,
u'CAGCAGTTTTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1183947,
u'CAGTTTTTCGA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1229946,
u'GCCAGCAGTTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1344215,
u'CAGTTTTTCGA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1371531,
u'AGTTTTTCGAC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1430320,
u'ACTGCCAGCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1513715,
u'AGCAGTTTTTC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1641111,
u'TGCCAGCAGTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1687364,
u'CAGTTTTTCGA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1704813,
u'AGCAGTTTTTC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1757919,
u'ACTGCCAGCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1809812,
u'GCAGTTTTTCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1979815,
u'TGCCAGCAGTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2099463,
u'CAGCAGTTTTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2233609,
u'CAGCAGTTTTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2433203,
u'GCAGTTTTTCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2460320,
u'TGCCAGCAGTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2546475,
u'GCAGTTTTTCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2615151,
u'ACTGCCAGCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2705563,
u'GCCAGCAGTTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2748941,
u'CAGCAATTTTTCGAC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2962965,
u'CTGCCAGCAGT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3002268,
u'CTGCCAGCAGT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3062396,
u'GCCAGCAGGTTTTCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3356244,
u'GCCAGCAGTTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3412710,
u'TGCCAGCAGTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3542671,
u'TGCCAGCAGTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3835016,
u'ACTGCCAGCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3906875,
u'GCCAGCAGTTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3928447,
u'GCCAGCAGTTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3975250,
u'CTGCCAGCAGT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3977005,
u'GCCAGCAGTTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4072273,
u'CCAGCAGTTTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4095860,
u'CTGCCAGCAGT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4166270,
u'CAGTTTTTCGA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4218052,
u'GCCAGCAGTTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4307922,
u'GCCATCAGTTTTTCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4332630,
u'CCAGCAGTTTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4346313,
u'CAGTTTTTCGA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4357509,
u'GCCAGCAGTTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4441106,
u'GCCAGCAGTTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4448617,
u'TGCCAGCAGTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4489834,
u'AGCAGTTTTTC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4611838,
u'GCCAGCAGTTT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4616242,
u'ACTGCCAGCAG')]]),
(100,
[[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3140,
u'TGCGGCAAGCCGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
687073,
u'CGGCAAGCCGCA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2630992,
u'GCGGCAAGCCGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4556953,
u'GGCAAGCCGCAT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
80999,
u'GCAAGCCGCAT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
134732,
u'ATTGCGGTAAGCCGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
337978,
u'GGCAAGCCGCA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
360719,
u'GGCAAGCCGCA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
501387,
u'CGGCAAGCCGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
943120,
u'CGGCAAGCCGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1035182,
u'CGGCAAGCCGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1439204,
u'TTGCGGCAAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1505283,
u'TATTGCGGCAA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1809819,
u'GCAAGCCGCAT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1945448,
u'GCAAGCCGCAT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2007655,
u'GCGGCAAGCCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2325481,
u'AAGCCGCATTC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2433348,
u'CGGCAAGCCGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2672839,
u'TGCGGCAAGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2702895,
u'TATTGCGGCAA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2962264,
u'TATTGCGGCAA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2998222,
u'GGCAAGCCGCA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3058480,
u'TATTGCGGCAA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3131404,
u'CGGCAAGCCGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3700277,
u'GCGGCAAGCCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3785164,
u'GCGGCAAGCCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3888204,
u'AAGCCGCATTC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4020576,
u'CGGCAAGCCGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4067312,
u'CGGCAAGCCGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4096462,
u'GCGGCAAGCCG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4284064,
u'TGCGGCAAGCC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4394489,
u'TTGCGGCAAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4401493,
u'GCGGCAAGCCACATT')]]),
(100,
[[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4057829,
u'ATCAGCACCATGT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
469067,
u'ATCAGCACCATG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
578004,
u'CATGTGATCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1778093,
u'TCAGCACCATGT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3768239,
u'ATCAGCACCATG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
33140,
u'ATCAGCACCAT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
104469,
u'CATGTGATCAG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
379327,
u'ACCATGTGATC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
651489,
u'ATCAGCACCAT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1283637,
u'TCAGCACCATG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
1680887,
u'ATCAGCACCAT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2492939,
u'CCATGTGATCA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2574458,
u'CAGCACCATGT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2666211,
u'ATGTGATCAGC')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2791810,
u'TCAGCACCATG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2807892,
u'TCAGCACCATG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
2977029,
u'ATCAGCACCAT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3257452,
u'TCAGCACCATG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3292644,
u'ATCAGCACCAT')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
3932447,
u'TCAGCACCATG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4186931,
u'TCAGCACCATG')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4226887,
u'CCATGTGATCA')],
[0.0,
(u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome',
4272208,
u'ACCATGTGATC')]])]
In [34]:
for score, details in results[68:70]:
print score
oof= zip([b[1][2] for b in details], [b[1] for b in details])
for item in oof:
print str(item[0]) + str(item[1][1:]) + "\n"
100
37
TCGCATCAGGCGCTGAATG(2894848, u'TCGCATCAGGCGCTGAATG')
TCGCATCAGGCGTTGAATGC(66632, u'TCGCATCAGGCGTTGAATGC')
TCGCATCAGGCGTTGAATGC(66717, u'TCGCATCAGGCGTTGAATGC')
TCGCATCAGGCACTGAATGC(2118572, u'TCGCATCAGGCACTGAATGC')
TCGCATCAGGCGCTG(4484343, u'TCGCATCAGGCGCTG')
CGCATCAGGCGCTG(903694, u'CGCATCAGGCGCTG')
GCATCAGGCGCTGA(1701122, u'GCATCAGGCGCTGA')
CAGGCGCTGAATGC(1798738, u'CAGGCGCTGAATGC')
CATCAGGCGCTGAA(3721446, u'CATCAGGCGCTGAA')
GCATCAGGCGCTGCATGC(4325118, u'GCATCAGGCGCTGCATGC')
TCGCATCAGGCGCT(4633220, u'TCGCATCAGGCGCT')
CATCAGGCGCTGA(209562, u'CATCAGGCGCTGA')
AGGCGCTGAATGC(929386, u'AGGCGCTGAATGC')
GCATCAGGCGCTG(1071556, u'GCATCAGGCGCTG')
CATCAGGCGCTGGATGC(1110950, u'CATCAGGCGCTGGATGC')
CGCATCTGGCGCTGAAT(1282814, u'CGCATCTGGCGCTGAAT')
GCATCAGGCGCTG(1356126, u'GCATCAGGCGCTG')
ATCAGGCGCTGAA(2832204, u'ATCAGGCGCTGAA')
CATCAGGCGCTGA(3810275, u'CATCAGGCGCTGA')
CGCATCAGGCGCT(4026485, u'CGCATCAGGCGCT')
GCATCAGGCGCTTAATG(4302521, u'GCATCAGGCGCTTAATG')
GGCGCTGAATGC(33972, u'GGCGCTGAATGC')
ATCAGGCGCTGA(73830, u'ATCAGGCGCTGA')
GGCGCTGAATGC(139894, u'GGCGCTGAATGC')
TCGCATCAGGCG(216112, u'TCGCATCAGGCG')
CAGGCGCTGAAT(340447, u'CAGGCGCTGAAT')
CATCAGGCGCTG(474777, u'CATCAGGCGCTG')
ATCAGGCGCTGA(588820, u'ATCAGGCGCTGA')
ATCAGGCGCTGTATGC(613791, u'ATCAGGCGCTGTATGC')
AGGCGCTGAATG(618972, u'AGGCGCTGAATG')
TCAGGCGCTGAA(696246, u'TCAGGCGCTGAA')
TCAGGCGCTGAA(726992, u'TCAGGCGCTGAA')
CATCAGGCGCTTAATG(931475, u'CATCAGGCGCTTAATG')
TCGCATCAGGCG(1013724, u'TCGCATCAGGCG')
TCAGGCGCTGAA(1130315, u'TCAGGCGCTGAA')
AGGCGCTGAATG(1142284, u'AGGCGCTGAATG')
CATCAGGCGCTG(1225996, u'CATCAGGCGCTG')
CAGGCGCTGAAT(1379363, u'CAGGCGCTGAAT')
CAGGCGCTGAAT(1681564, u'CAGGCGCTGAAT')
CATCAGGCGCTG(1841781, u'CATCAGGCGCTG')
GGCGCTGAATGC(2117223, u'GGCGCTGAATGC')
TCGCATCAGGCAATGAATGC(2123080, u'TCGCATCAGGCAATGAATGC')
TCGCATCAGGCG(2139712, u'TCGCATCAGGCG')
TCGCATCAGGCG(2146610, u'TCGCATCAGGCG')
CGCATCAGGCGC(2248831, u'CGCATCAGGCGC')
TCAGGCGCTGAA(2262995, u'TCAGGCGCTGAA')
TCAGGCGCTGAA(2625393, u'TCAGGCGCTGAA')
AGGCGCTGAATG(2920373, u'AGGCGCTGAATG')
AGGCGCTGAATG(2947751, u'AGGCGCTGAATG')
TCGCATCAGGCG(3042331, u'TCGCATCAGGCG')
CATCAGGCGCTG(3060194, u'CATCAGGCGCTG')
CAGGCGCTGAAT(3148833, u'CAGGCGCTGAAT')
TCAGGCGCTGAA(3156101, u'TCAGGCGCTGAA')
ATCAGGCGCTGA(3196341, u'ATCAGGCGCTGA')
CATCAGGCGCTG(3197292, u'CATCAGGCGCTG')
GGCGCTGAATGC(3526705, u'GGCGCTGAATGC')
TCAGGCGCTGAA(3787443, u'TCAGGCGCTGAA')
CAGGCGCTGAAT(3957704, u'CAGGCGCTGAAT')
GGCGCTGAATGC(4108968, u'GGCGCTGAATGC')
TCGCATCAGGCG(4249372, u'TCGCATCAGGCG')
TCGCATCAGGCG(4295958, u'TCGCATCAGGCG')
TCGCATCAGGCG(4296071, u'TCGCATCAGGCG')
TCGCATCAGGCG(4296184, u'TCGCATCAGGCG')
TCGCATCAGGCG(4296297, u'TCGCATCAGGCG')
ATCAGGCGCTGA(4341015, u'ATCAGGCGCTGA')
GCATCAGGCGCAGAAT(4418241, u'GCATCAGGCGCAGAAT')
TCAGGCGCTGAA(4559884, u'TCAGGCGCTGAA')
CAGGCGCTGAAT(4566794, u'CAGGCGCTGAAT')
TCGCATCAGGC(39222, u'TCGCATCAGGC')
TCAGGCGCTGA(47789, u'TCAGGCGCTGA')
CAGGCGCTGAA(64313, u'CAGGCGCTGAA')
CAGGCGCTGAA(81895, u'CAGGCGCTGAA')
GGCGCTGAATG(98073, u'GGCGCTGAATG')
TCGCATCAGGC(111487, u'TCGCATCAGGC')
TCGCATCAGGC(111603, u'TCGCATCAGGC')
AGGCGCTGAAT(135143, u'AGGCGCTGAAT')
TCGCATCAGGC(244187, u'TCGCATCAGGC')
TCGCATCAGGC(247516, u'TCGCATCAGGC')
TCGCATCAGGC(248157, u'TCGCATCAGGC')
TCGCATCAGGC(248258, u'TCGCATCAGGC')
TCGCATCAGGC(375006, u'TCGCATCAGGC')
TCGCATCAGGC(375107, u'TCGCATCAGGC')
TCGCATCAGGC(375208, u'TCGCATCAGGC')
TCGCATCAGGC(375309, u'TCGCATCAGGC')
TCGCATCAGGC(377345, u'TCGCATCAGGC')
TCGCATCAGGC(377445, u'TCGCATCAGGC')
TCGCATCAGGC(411088, u'TCGCATCAGGC')
TCGCATCAGGC(411190, u'TCGCATCAGGC')
ATCAGGCGCTG(454004, u'ATCAGGCGCTG')
ATCAGGCGCTG(458435, u'ATCAGGCGCTG')
ATCAGGCGCTG(492831, u'ATCAGGCGCTG')
ATCAGGCGCTG(496912, u'ATCAGGCGCTG')
TCGCATCAGGC(501502, u'TCGCATCAGGC')
ATCAGGCGCTG(509569, u'ATCAGGCGCTG')
CAGGCGCTGAA(536187, u'CAGGCGCTGAA')
TCGCATCAGGC(551364, u'TCGCATCAGGC')
TCGCATCAGGC(551434, u'TCGCATCAGGC')
CAGGCGCTGAA(640161, u'CAGGCGCTGAA')
GCGCTGAATGC(649513, u'GCGCTGAATGC')
CGCATCAGGCG(699092, u'CGCATCAGGCG')
CAGGCGCTGAA(700511, u'CAGGCGCTGAA')
TCGCATCAGGC(705911, u'TCGCATCAGGC')
TCGCATCAGGC(741049, u'TCGCATCAGGC')
GCATCAGGCGC(755836, u'GCATCAGGCGC')
CGCATCAGGCG(758517, u'CGCATCAGGCG')
TCGCATCAGGC(786759, u'TCGCATCAGGC')
TCAGGCGCTGA(793348, u'TCAGGCGCTGA')
ATCAGGCGCTG(798271, u'ATCAGGCGCTG')
AGGCGCTGAAT(870270, u'AGGCGCTGAAT')
ATCAGGCGCTG(903388, u'ATCAGGCGCTG')
CAGGCGCTGAA(921331, u'CAGGCGCTGAA')
GGCGCTGAATG(948575, u'GGCGCTGAATG')
CGCATCTGGCGCTGA(994510, u'CGCATCTGGCGCTGA')
TCGCATCAGGC(1040568, u'TCGCATCAGGC')
TCGCATCAGGC(1084692, u'TCGCATCAGGC')
CAGGCGCTGAA(1113212, u'CAGGCGCTGAA')
CAGGCGCTGAA(1127797, u'CAGGCGCTGAA')
GGCGCTGAATG(1133089, u'GGCGCTGAATG')
TCAGGCGCTGA(1143191, u'TCAGGCGCTGA')
TCGCATCAGGC(1276142, u'TCGCATCAGGC')
TCGCATCCGGCGCTG(1386009, u'TCGCATCCGGCGCTG')
GCGCTGAATGC(1422510, u'GCGCTGAATGC')
ATCAGGCGCTG(1505071, u'ATCAGGCGCTG')
AGGCGCTGAAT(1701099, u'AGGCGCTGAAT')
GCGCTGAATGC(1754986, u'GCGCTGAATGC')
TCAGGCGCTGA(1829123, u'TCAGGCGCTGA')
CATCAGGCGCT(1854375, u'CATCAGGCGCT')
CGCATCAGGCG(1876661, u'CGCATCAGGCG')
TCAGGCGCTGA(1924040, u'TCAGGCGCTGA')
AGGCGCTGAAT(1932846, u'AGGCGCTGAAT')
TCGCATCAGGC(1944294, u'TCGCATCAGGC')
TCAGGCGCTGA(1950108, u'TCAGGCGCTGA')
TCGCATCAGGC(1951599, u'TCGCATCAGGC')
GCGCTGAATGC(1971563, u'GCGCTGAATGC')
GCATCAGGCGC(2016231, u'GCATCAGGCGC')
CAGGCGCTGAA(2075343, u'CAGGCGCTGAA')
ATCAGGCGCTG(2090310, u'ATCAGGCGCTG')
GCGCTGAATGC(2101296, u'GCGCTGAATGC')
TCGCATCAGGC(2118476, u'TCGCATCAGGC')
GCATCAGGCGC(2187195, u'GCATCAGGCGC')
CAGGCGCTGAA(2196994, u'CAGGCGCTGAA')
CAGGCGCTGAA(2212569, u'CAGGCGCTGAA')
GCATCAGGCGC(2227530, u'GCATCAGGCGC')
CAGGCGCTGAA(2262421, u'CAGGCGCTGAA')
CATCAGGCGCT(2267679, u'CATCAGGCGCT')
ATCAGGCGCTG(2280837, u'ATCAGGCGCTG')
TCGCATCAGGC(2304820, u'TCGCATCAGGC')
TCGCATCAGGC(2340323, u'TCGCATCAGGC')
TCGCATCAGGC(2347317, u'TCGCATCAGGC')
TCGCATCAGGC(2431002, u'TCGCATCAGGC')
TCGCATCAGGC(2511362, u'TCGCATCAGGC')
TCGCATCAGGC(2539617, u'TCGCATCAGGC')
CAGGCGCTGAA(2573612, u'CAGGCGCTGAA')
TCGCATCAGGC(2593035, u'TCGCATCAGGC')
GCGCTGAATGC(2623698, u'GCGCTGAATGC')
GCGCTGAATGC(2638406, u'GCGCTGAATGC')
TCGCATCAGGC(2662564, u'TCGCATCAGGC')
TCAGGCGCTGA(2695040, u'TCAGGCGCTGA')
TCGCATCAGGC(2725999, u'TCGCATCAGGC')
GCGCTGAATGC(2801399, u'GCGCTGAATGC')
TCGCATCAGGC(2808189, u'TCGCATCAGGC')
CAGGCGCTGAA(2824304, u'CAGGCGCTGAA')
GCGCTGAATGC(2851941, u'GCGCTGAATGC')
CAGGCGCTGAA(2875969, u'CAGGCGCTGAA')
TCGCATCAGGC(2888344, u'TCGCATCAGGC')
TCAGGCGCTGA(2907714, u'TCAGGCGCTGA')
TCAGGCGCTGA(2918251, u'TCAGGCGCTGA')
TCAGGCGCGGAATGC(2940709, u'TCAGGCGCGGAATGC')
CAGGCGCTGAA(2958239, u'CAGGCGCTGAA')
ATCAGGCGCTG(2971901, u'ATCAGGCGCTG')
CATCAGGCGCT(3014655, u'CATCAGGCGCT')
TCGCATCAGGC(3042303, u'TCGCATCAGGC')
TCGCATCAGGC(3042450, u'TCGCATCAGGC')
TCGCATCAGGC(3139678, u'TCGCATCAGGC')
CATCAGGCGCT(3142267, u'CATCAGGCGCT')
TCGCATCAGGC(3217512, u'TCGCATCAGGC')
CAGGCGCTGAA(3225445, u'CAGGCGCTGAA')
TCGCATCAGGC(3297009, u'TCGCATCAGGC')
GGCGCTGAATG(3351454, u'GGCGCTGAATG')
ATCAGGCGCTG(3419100, u'ATCAGGCGCTG')
CATCAGGCGCT(3442229, u'CATCAGGCGCT')
GCATCAGGCGC(3551660, u'GCATCAGGCGC')
CAGGCGCTGAA(3577394, u'CAGGCGCTGAA')
CGCATCAGGCG(3628763, u'CGCATCAGGCG')
CGCATCAGGCG(3650802, u'CGCATCAGGCG')
TCGCATCAGGC(3708332, u'TCGCATCAGGC')
GGCGCTGAATG(3723114, u'GGCGCTGAATG')
TCAGGCGCTGA(3740782, u'TCAGGCGCTGA')
TCGCATCAGGC(3754931, u'TCGCATCAGGC')
CAGGCGCTGAA(3827201, u'CAGGCGCTGAA')
CAGGCGCTGAA(3873246, u'CAGGCGCTGAA')
CAGGCGCTGAA(3915011, u'CAGGCGCTGAA')
CAGGCGCTGAA(3969715, u'CAGGCGCTGAA')
CAGGCGCTGAA(4005815, u'CAGGCGCTGAA')
AGGCGCTGAAT(4008512, u'AGGCGCTGAAT')
TCGCATCAGGC(4027430, u'TCGCATCAGGC')
TCGCATCAGGC(4027528, u'TCGCATCAGGC')
ATCAGGCGCTG(4032856, u'ATCAGGCGCTG')
GCGCTGAATGC(4067548, u'GCGCTGAATGC')
TCGCATCAGGC(4103533, u'TCGCATCAGGC')
GCATCAGGCGC(4125449, u'GCATCAGGCGC')
CGCATCAGGCG(4128039, u'CGCATCAGGCG')
TCGCATCAGGC(4218494, u'TCGCATCAGGC')
TCAGGCGCTGA(4244536, u'TCAGGCGCTGA')
TCGCATCAGGC(4295845, u'TCGCATCAGGC')
TCGCATCAGGC(4296408, u'TCGCATCAGGC')
TCGCATCAGGC(4325827, u'TCGCATCAGGC')
TCGCATCAGGC(4325927, u'TCGCATCAGGC')
TCGCATCAGGC(4326027, u'TCGCATCAGGC')
TCGCATCAGGC(4326127, u'TCGCATCAGGC')
TCGCATCAGGC(4326227, u'TCGCATCAGGC')
TCGCATCAGGC(4326327, u'TCGCATCAGGC')
CGCATCAGGCG(4392073, u'CGCATCAGGCG')
GCGCTGAATGC(4418815, u'GCGCTGAATGC')
ATCAGGCGCTG(4420896, u'ATCAGGCGCTG')
TCGCATCAGGC(4451002, u'TCGCATCAGGC')
TCGCATCAGGC(4457242, u'TCGCATCAGGC')
CGCATCAGGCG(4470459, u'CGCATCAGGCG')
TCGCATCAGGC(4488530, u'TCGCATCAGGC')
TCAGGCGCTGA(4564914, u'TCAGGCGCTGA')
CGCATCAGGCG(4569287, u'CGCATCAGGCG')
CAGGCGCTGAA(4583407, u'CAGGCGCTGAA')
TCGCATCAGGC(4614315, u'TCGCATCAGGC')
TCGCATCAGGC(4614416, u'TCGCATCAGGC')
TCGCATCAGGC(4614517, u'TCGCATCAGGC')
TCGCATCAGGC(4614618, u'TCGCATCAGGC')
CGCATCAGGCG(4615371, u'CGCATCAGGCG')
CGCATCAGGCG(4618126, u'CGCATCAGGCG')
TCGCATCAGGC(4628753, u'TCGCATCAGGC')
In [35]:
print item
(u'TCGCATCAGGC', (u'gi|545778205|gb|U00096.3| Escherichia coli str. K-12 substr. MG1655, complete genome', 4628753, u'TCGCATCAGGC'))
In [36]:
len(results)
Out[36]:
92450
In [38]:
posresults = []
for item in results:
posresults.append((item[1][-2], item[0]))
---------------------------------------------------------------------------
IndexError Traceback (most recent call last)
<ipython-input-38-233100378d80> in <module>()
1 posresults = []
2 for item in results:
----> 3 posresults.append((item[1][-2], item[0]))
IndexError: list index out of range
In [39]:
item
Out[39]:
(100, [])
In [ ]:
Content source: eatingcrispr/VirtualEating
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