# SIM Pattern Generator

### The Python version

From the SI of the paper:

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In [8]:

%pylab inline
#nice plotting
#import seaborn as sns
import numexpr as ne
#for minimizing the difference between the desired frequency and the calculated one
from scipy.optimize import minimize
#Need to be able to do polynomial fitting
from sklearn.preprocessing import PolynomialFeatures
from sklearn import linear_model
#PIL allows us to write binary images, though we need a cludge, see 'Writing Binary Files.ipynb'
from PIL import Image
import os
import zipfile

from scipy.ndimage import gaussian_filter

from skimage.draw import circle

from matplotlib.colors import LogNorm

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``````

Populating the interactive namespace from numpy and matplotlib

WARNING: pylab import has clobbered these variables: ['size', 'angle']
`%matplotlib` prevents importing * from pylab and numpy

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In [9]:

def pattern_gen(angle, period, onfrac = 0.5, phase_idx = 0., phase_offset = 0., nphases =5, sizex =2048, sizey =1536, SIM_2D = True):
'''
Generates a binary SLM pattern for SIM by generating a sine wave and then binarizing it

Parameters
----------
angle : float
Defines the pattern orientation
period : float
Defines the period of the pattern
onfrac : float
The fraction of on pixels in the pattern
phase_idx : int
phase_offset : float
The offset in phase, mostly used for aligning patterns of different colors
nphases : int
the number of phases
sizex : int
size of the pattern
sizey : int
size of the pattern

Returns
-------
pattern : ndarray
A binary array representing a single bitplane to send to the SLM
'''

if not 0 < onfrac < 1:
raise ValueError('onfrac must have a value between 0 and 1. onfrac = {}'.format(onfrac))

if SIM_2D:
#Then we only want to take steps of 2pi/n in illumination which means pi/n at the SLM
phase_step = 2
else:
phase_step = 1

#indices are backwards here for backwards compatability with older generation code.
yy, xx = meshgrid(arange(sizey),arange(sizex),indexing='ij')

#here's the pattern frequency
freq = 2*pi/period

phi = (phase_idx/nphases/phase_step)*(2*pi)+phase_offset

#our sine goes from -1 to 1 while on frac goes from 0,1 so move onfrac into the right range
onfrac = onfrac*2-1

#given angle is the angle of the fourier spots from the 'i' vector, so pattern should be 90 degrees from this
a=angle

#do the evaluation
toreturn = ne.evaluate("sin(freq*(cos(a)*xx+sin(a)*yy)+phi) > onfrac")

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In [10]:

%timeit pattern_gen(1.492, 8, 0.5, 0, 0, 5,2048,2048)

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10 loops, best of 3: 42.4 ms per loop

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In [11]:

matshow( pattern_gen(1.492, 8, 0.5, 0, 0, 5) )

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Out[11]:

<matplotlib.image.AxesImage at 0xa5dfeb8>

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In [12]:

size=128
pat =  pattern_gen(my_angle, 8, 0.5, 0, 0, 5,size,size)
pat_fft = fftshift(fftn(ifftshift(pat)))
l = size/8
figsize(10,10)
matshow(pat,cmap='Greys')
arrow(size/2,size/2,cos(my_angle)*l, sin(my_angle)*l,width=2/2048*size,ec='c')
grid('off')
matshow(abs(pat_fft),cmap='Greys',norm=LogNorm())
grid('off')
matshow(gaussian_filter(abs(pat_fft),10/2048*size),norm=LogNorm(),cmap='Greys')
grid('off')

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In [13]:

def angles(init_angle, num_angles):
thetas = arange(0., num_angles)*pi/1./num_angles + init_angle
return thetas

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In [14]:

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Out[14]:

array([   4.76,   64.76,  124.76])

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In [15]:

def ideal_period(wavelength, NA = 0.85):
'''
All units are in mm
'''
pixel_size = 8.2/1000 #pixel size in mm for QXGA display (4DD)
fl = 250 #focal length of lens in mm
fl2 = 300 #focal length of the second lens
ftube = 200 #focal length of the tube lens, for Nikon this is 200 mm
wl = wavelength/10**6 #wavelength of light
mag = 1/100
sigma = sqrt(2) * 12/pixel_size/4 #std dev of gaussian beam in units of pixels at the SLM
pupil_diameter = 2*NA*mag*fl2    #Size of pupil image at first fourier plane
hole_radius = 2*wl*fl/(2* pi * sigma *sqrt(2) * pixel_size) #this is the limit of hole size
hole_radius = 0.1/2# this is more reasonable (50 um)
period = wl * fl * (1/(pupil_diameter/2 - hole_radius))/ pixel_size #in mm

return period

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In [16]:

def pattern_params(angle, period, onfrac = 0.5, phaseInd = 0., phaseOffset = 0., nphases = 5, sizex =2048, sizey =1536):
'''
Find the precise pattern period

Using 2nd order polynomial fit along either axis
'''

#this is a standin for nextpow2, I don't know if there's a more efficient one, but its not going to
#be a bottle neck
n = 1<<(min(sizex,sizey)-1).bit_length()

my_pat = pattern_gen(angle, period, onfrac, phaseInd, phaseOffset, nphases, n, n)

my_pat_fft = abs(fftshift(fftn(ifftshift(my_pat))))

dc_loc = ((np.array(my_pat_fft.shape)+1)//2)

#mask data and find next biggest peak
#pull the 3x3 region around the peak
region_size = 3
start = -(region_size-1)//2
end = region_size+start

x = arange(start,end)

xfit = polyfit(x, my_pat_fft_subx,2)
yfit = polyfit(x, my_pat_fft_suby,2)

x0 = -xfit[1]/(2*xfit[0])
y0 = -yfit[1]/(2*yfit[0])

precisepeak = array(max_loc)+array([x0,y0])-array(dc_loc)

preciseangle = arctan2(precisepeak[0],precisepeak[1])

if angle < 0:
preciseangle -= pi

precise_period = n/norm(precisepeak)

return {"period" : precise_period, "angle" : preciseangle, "pat" : my_pat, "pat fft" : my_pat_fft}

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In [17]:

a =rand(1)*pi-pi/2
print(a)
print(tan(a))
z = pattern_params(a, 7)
print(z['angle'])

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[ 0.30029348]
[ 0.30965784]
0.303874659387

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In [18]:

matshow(gaussian_filter(z['pat fft'],10),norm=LogNorm())

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Out[18]:

<matplotlib.image.AxesImage at 0xc9e5ba8>

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In [19]:

matshow(z['pat'][:128,:128])

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Out[19]:

<matplotlib.image.AxesImage at 0xca47320>

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In [20]:

#testing different solvers, note that Nelder-Mead and Powell methods are the
#only ones that seem to work for this function.
def objf_l1(period, iperiod, size = 1024):
angle = 1.492
data = array([pattern_params(angle, period,phaseInd = n,sizex = size)['period'] for n in range(1)])
return mean(abs(data-iperiod))

def objf_l2(*args):
return objf_l1(*args)**2

%timeit minimize(objf_l1, 8.4,method='Powell',args=(ideal_period(568, 0.7),512))

%timeit minimize(objf_l2, 8.4,method='Powell',args=(ideal_period(568, 0.7),512))

res_l1_p = minimize(objf_l1, 8.4,method='Powell',args=(ideal_period(568, 0.7),512))

res_l2_p = minimize(objf_l2, 8.4,method='Powell',args=(ideal_period(568, 0.7),512))

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1 loops, best of 3: 1.24 s per loop
1 loops, best of 3: 2.36 s per loop
1 loops, best of 3: 1.25 s per loop
1 loops, best of 3: 3.96 s per loop

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In [21]:

print('x values')
print('L1-norm: Nelder-Mead = {}\tPowell = {}'.format(res_l1_nm['x'][0],res_l1_p['x']))
print('L2-norm: Nelder-Mead = {}\tPowell = {}'.format(res_l2_nm['x'][0],res_l2_p['x']))
print('Func Calls')
print('L1-norm: Nelder-Mead = {}\tPowell = {}'.format(res_l1_nm['nfev'],res_l1_p['nfev']))
print('L2-norm: Nelder-Mead = {}\tPowell = {}'.format(res_l2_nm['nfev'],res_l2_p['nfev']))
print('Differences')
print('L1-norm: Nelder-Mead - Powell = {}'.format(res_l1_nm['fun']-res_l1_p['fun']))
print('L1-norm: Nelder-Mead - Powell = {}'.format(res_l1_nm['fun']**2-res_l1_p['fun']**2))
print('L2-norm: Nelder-Mead - Powell = {}'.format(res_l2_nm['fun']-res_l2_p['fun']))

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x values
L1-norm: Nelder-Mead = 8.436606445312503	Powell = 8.436552077585471
L2-norm: Nelder-Mead = 8.436606445312503	Powell = 8.43654578876646
Func Calls
L1-norm: Nelder-Mead = 38	Powell = 71
L2-norm: Nelder-Mead = 38	Powell = 114
Differences
L1-norm: Nelder-Mead - Powell = 3.662237410395619e-05
L1-norm: Nelder-Mead - Powell = 4.040938787977771e-06
L2-norm: Nelder-Mead - Powell = 4.345110138979317e-06

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It looks like the simplex (`'Nelder-Mead'`) algorithm is the best for this problem. Barring more complex convex methods.

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In [299]:

iperiod = ideal_period(568,0.7)

def objf(period, iperiod, size = 1024):
return objf_l1(period, iperiod, size)/iperiod*100

x = linspace(iperiod-0.05,iperiod+0.05,101)
y512 = array([objf(period, iperiod,512) for period in x])
y1024 = array([objf(period, iperiod,1024) for period in x])
y2048 = array([objf(period, iperiod,2048) for period in x])

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In [300]:

res_512 = minimize(objf, iperiod ,method='Nelder-Mead',args=(ideal_period(568, 0.7),512))
res_1024 = minimize(objf, iperiod ,method='Nelder-Mead',args=(ideal_period(568, 0.7),1024))
res_2048 = minimize(objf, iperiod ,method='Nelder-Mead',args=(ideal_period(568, 0.7),2048))

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In [301]:

plot(x,y512,'b',label='512 x 512')
plot(res_512['x'],res_512['fun'],'bo')#,label='512 Optimized point')
plot(x,y1024,'r',label='1024 x 1024')
plot(res_1024['x'],res_1024['fun'],'ro')#,label='1024 Optimized point')
plot(x,y2048,'g',label='2048 x 2048')
plot(res_2048['x'],res_2048['fun'],'go')#,label='1024 Optimized point')
axis('tight')
axvline(iperiod,color='k',linestyle='dashed',label='Starting Point')
xlabel('Given Period')
ylabel('% Error')
legend(loc='best')
savefig("PeriodOpt2.pdf")

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In [22]:

def opt_period(iperiod,angle,**kwargs):
def objf_l1(period):
data = array([pattern_params(angle, period, **kwargs)['period'] for n in range(1)])
return mean(abs(data-iperiod))

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In [23]:

def opt_angle(period,iangle,**kwargs):
def objf_l1(angle):
data = array([pattern_params(angle, period, **kwargs)['angle'] for n in range(1)])
return mean(abs(data-iangle))

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In [31]:

def objf_l1(angle, iangle, size = 1024):
period = ideal_period(568,0.7)
data = array([pattern_params(angle, period,phaseInd = n,sizex = size)['angle'] for n in range(1)])
return mean(abs(data-iangle))

def objf(angle, iangle, size = 1024):
return objf_l1(angle, iangle, size)/iangle*100

x = linspace(iangle-0.05,iangle+0.05,101)
y512 = array([objf(angle, iangle,512) for angle in x])
y1024 = array([objf(angle, iangle,1024) for angle in x])
y2048 = array([objf(angle, iangle,2048) for angle in x])

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In [32]:

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In [33]:

plot(x,y512,'b',label='512 x 512')
plot(res_512['x'],res_512['fun'],'bo')#,label='512 Optimized point')
plot(x,y1024,'r',label='1024 x 1024')
plot(res_1024['x'],res_1024['fun'],'ro')#,label='1024 Optimized point')
plot(x,y2048,'g',label='2048 x 2048')
plot(res_2048['x'],res_2048['fun'],'go')#,label='1024 Optimized point')
axis('tight')
axvline(iangle,color='k',linestyle='dashed',label='Starting Point')
xlabel('Given Angle')
ylabel('% Error')
legend(loc='best')
savefig("AngleOpt +124.76.pdf")

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In [311]:

'''
We can use sets as a way to keep track of images and sequences.

Images and sequences will be denoted by strings referring to the actual file name

A repetoire will only contain a list of RunningOrders and have a method to write out running orders.

It should also have the ability to read in a .rep file

Need a method to return a given running order, by name
'''

class RunningOrder(object):
'''
A class representing a running order for a 4DD SLM
'''

def __init__(self, name, triggered = True):
self._name = name
#we want these properties to be immutable and we don't want duplicates
self._sequences = set()
self._bitplanes = set()
self.triggered = triggered
self._RO = []

@property
def name(self):
return self._name

@property
def sequences(self):
return self._sequences

@property
def bitplanes(self):
return self._bitplanes

@property
def RO(self):
return self._RO

def addbitplane(self, sequence, bitplane, position = None):
'''
A function to add sequence bitplane pairs to a running order
'''

seq_bp = {'sequence' : sequence, 'bitplane' : bitplane}

if position is None:
self._RO.append(seq_bp)
else:
self._RO.insert(position, seq_bp)

class Repetoire(object):
'''
This object holds a list of Running orders. It has the ability to output .rep files

Further functionality will be to read in .rep files.
'''

def __init__(self, listofROs = None):
self._ROs = []
self._sequences = set()
self._bitplanes = set()
if listofROs is not None:
for RO in listofROs:

if isinstance(RO, list):

if not isinstance(RO, RunningOrder):
raise TypeError('Not a RunningOrder')
else:
self._ROs.append(RO)
self._sequences |= RO.sequences
self._bitplanes |= RO.bitplanes

def __str__(self):
'''
This function writes the repetoire
'''

toreturn = ''

#If ROs is empty
if not len(self._ROs):

####################
# MAKING SEQUENCES #
####################

#need to save the letter assignments
seq_dict = {}

seqs = ['SEQUENCES']
for i, seq in enumerate(sorted(self._sequences)):
char = chr(65+i)
seqs.append(char+' "'+seq+'"')
seq_dict[seq] = char

seqs.append('SEQUENCES_END\n\n')

toreturn = "\n".join(seqs)

####################
# MAKING BITPLANES #
####################

bp_dict = {}
bps = ['IMAGES']
for i, bp in enumerate(sorted(self._bitplanes)):
bps.append('1 "'+bp+'"')
bp_dict[bp] = i

bps.append('IMAGES_END\n\n')

toreturn += "\n".join(bps)

#Need to have at least one RunningOrder be Default, why not the first one?
#If no DEFAULT then MetroCon will continue to look for one and fail.
toreturn += 'DEFAULT '
#sort the RunningOrders by name
for RO in self._ROs:#.sort(key=lambda x: x.name):
toreturn += self._writeRO(RO, seq_dict, bp_dict)

@staticmethod
def _writeRO(RO, seq_dict, bp_dict):
'''
This function will write the repetoire based on the sequence dict and image dict

It assumes that all that is wanted is standard SIM sequences
'''

toreturn = ['"{}"'.format(RO.name)]

toreturn.append('[HWA\n')

if not RO.triggered:
toappend = ' {'

for seq_bp in RO.RO:
seq = seq_bp['sequence']
bp = seq_bp['bitplane']
if RO.triggered:
toreturn.append(' <t({0},{1}) >\n {{f ({0},{1}) }}'.format(seq_dict[seq],bp_dict[bp]))
else:
toappend += '({0},{1}) '.format(seq_dict[seq],bp_dict[bp])

if not RO.triggered:
toappend += '}'
toreturn.append(toappend)

toreturn.append(']\n\n')

return '\n'.join(toreturn)

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In [312]:

from matplotlib.patches import Circle, Wedge, Polygon

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In [344]:

fig,ax = subplots(1,1,squeeze=True, figsize=(6,6))
circle = Circle((0,0),1,fill=False)
ax.set_xlim(-1.5,1.5)
ax.set_ylim(-1.5,1.5)
colors = ('r','k','b')
for ang, c in zip(angles(1.492,3),colors):

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In [360]:

##Regular SIM for 488 and 561
onfrac = 0.5

num_phases = 3

name = 'SIM 2D 488 and 561 New Algo test'

#open zip file, make sure the compression is set to ZIP_DEFLATED (8)
with zipfile.ZipFile('{}.repz11'.format(name), 'w', compression=zipfile.ZIP_DEFLATED) as myzip:

opt = False

my_dir = os.path.join(name,'')
if not os.path.isdir(my_dir):
print('Making '+my_dir)
os.mkdir(my_dir)

NAs = linspace(0.78,0.85,8)

ROlist = []

seq = '48070 HHMI 10ms.seq11'

myzip.write(os.path.join('HHMI_R11_Seq',seq),arcname=seq)

for wl in [488, 561]:
for NA in NAs:
print('{} NA {}'.format(wl, NA))

iperiod = ideal_period(wl,NA=NA)
super_RO = RunningOrder('{} SIM NA {}'.format(wl,NA))

RO_all_t = RunningOrder('{} NA {} All Orientations Triggered'.format(wl,NA))
RO_all = RunningOrder('{} NA {} All Orientations'.format(wl,NA),triggered=False)

patall =zeros((1536, 2048))

for angle in my_angles:

#calculate degree from angle for filename

RO1orient = RunningOrder('{} NA {} {:+.2f} degrees'.format(wl, NA, degree), triggered=False)

#optimize the angle
if opt:
print('Optimizing angle = {:+.2f} degrees'.format(degree))
my_per = opt_period(iperiod,angle)[0]
else:
my_per = iperiod

for phase in range(num_phases):
#generate pattern
pat = pattern_gen(angle, my_per,onfrac=onfrac,phase_idx=phase,nphases=num_phases)

#make image object
pat_img = Image.fromarray((pat*255).astype('uint8'),mode='L')

#generate filename, put orientation in front, so that its consistent
name = 'pat-{:.2f}NA{:+.1f}deg-{:02d}ph-{:.4f}pix-{:.2f}DC.bmp'.format(NA, degree,phase,my_per,onfrac)

#convert to binary and save
pat_img.convert('1').save(os.path.join(my_dir,name))

#move to zip file and save
myzip.write(os.path.join(my_dir,name),arcname=name)

if not phase:
patall += pat

print('Wrote file: {}'.format(name))

ROlist.append(RO1orient)

#make image object for all
patall_img = Image.fromarray((patall/num_angles*255).astype('uint8'),mode='L')

#generate filename, put orientation in front, so that its consistent
nameall = 'pat-{:.2f}NA-{:.4f}pix-{:.2f}DC_allangles.bmp'.format(NA,my_per,onfrac)

#convert to binary and save
patall_img.convert('1').save(os.path.join(my_dir,nameall))

#move to zip file and save
myzip.write(os.path.join(my_dir,nameall),arcname=nameall)

ROlist.append(super_RO)
ROlist.append(RO_all_t)
ROlist.append(RO_all)

my_Rep = Repetoire(ROlist)

#write the rep file
with open(os.path.join(my_dir,'{}.rep'.format(name)),'w') as repfile:
repfile.write(str(my_Rep))

#now add the file to the zip
myzip.write(os.path.join(my_dir,'{}.rep'.format(name)),arcname='{}.rep'.format(name))

print(my_Rep)

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488 NA 0.78
Wrote file: pat-0.78NA+4.8deg-00ph-6.4970pix-0.50DC.bmp
Wrote file: pat-0.78NA+4.8deg-01ph-6.4970pix-0.50DC.bmp
Wrote file: pat-0.78NA+4.8deg-02ph-6.4970pix-0.50DC.bmp
Wrote file: pat-0.78NA+64.8deg-00ph-6.4970pix-0.50DC.bmp
Wrote file: pat-0.78NA+64.8deg-01ph-6.4970pix-0.50DC.bmp
Wrote file: pat-0.78NA+64.8deg-02ph-6.4970pix-0.50DC.bmp
Wrote file: pat-0.78NA+124.8deg-00ph-6.4970pix-0.50DC.bmp
Wrote file: pat-0.78NA+124.8deg-01ph-6.4970pix-0.50DC.bmp
Wrote file: pat-0.78NA+124.8deg-02ph-6.4970pix-0.50DC.bmp
488 NA 0.79
Wrote file: pat-0.79NA+4.8deg-00ph-6.4130pix-0.50DC.bmp
Wrote file: pat-0.79NA+4.8deg-01ph-6.4130pix-0.50DC.bmp
Wrote file: pat-0.79NA+4.8deg-02ph-6.4130pix-0.50DC.bmp
Wrote file: pat-0.79NA+64.8deg-00ph-6.4130pix-0.50DC.bmp
Wrote file: pat-0.79NA+64.8deg-01ph-6.4130pix-0.50DC.bmp
Wrote file: pat-0.79NA+64.8deg-02ph-6.4130pix-0.50DC.bmp
Wrote file: pat-0.79NA+124.8deg-00ph-6.4130pix-0.50DC.bmp
Wrote file: pat-0.79NA+124.8deg-01ph-6.4130pix-0.50DC.bmp
Wrote file: pat-0.79NA+124.8deg-02ph-6.4130pix-0.50DC.bmp
488 NA 0.8
Wrote file: pat-0.80NA+4.8deg-00ph-6.3311pix-0.50DC.bmp
Wrote file: pat-0.80NA+4.8deg-01ph-6.3311pix-0.50DC.bmp
Wrote file: pat-0.80NA+4.8deg-02ph-6.3311pix-0.50DC.bmp
Wrote file: pat-0.80NA+64.8deg-00ph-6.3311pix-0.50DC.bmp
Wrote file: pat-0.80NA+64.8deg-01ph-6.3311pix-0.50DC.bmp
Wrote file: pat-0.80NA+64.8deg-02ph-6.3311pix-0.50DC.bmp
Wrote file: pat-0.80NA+124.8deg-00ph-6.3311pix-0.50DC.bmp
Wrote file: pat-0.80NA+124.8deg-01ph-6.3311pix-0.50DC.bmp
Wrote file: pat-0.80NA+124.8deg-02ph-6.3311pix-0.50DC.bmp
488 NA 0.81
Wrote file: pat-0.81NA+4.8deg-00ph-6.2513pix-0.50DC.bmp
Wrote file: pat-0.81NA+4.8deg-01ph-6.2513pix-0.50DC.bmp
Wrote file: pat-0.81NA+4.8deg-02ph-6.2513pix-0.50DC.bmp
Wrote file: pat-0.81NA+64.8deg-00ph-6.2513pix-0.50DC.bmp
Wrote file: pat-0.81NA+64.8deg-01ph-6.2513pix-0.50DC.bmp
Wrote file: pat-0.81NA+64.8deg-02ph-6.2513pix-0.50DC.bmp
Wrote file: pat-0.81NA+124.8deg-00ph-6.2513pix-0.50DC.bmp
Wrote file: pat-0.81NA+124.8deg-01ph-6.2513pix-0.50DC.bmp
Wrote file: pat-0.81NA+124.8deg-02ph-6.2513pix-0.50DC.bmp
488 NA 0.82
Wrote file: pat-0.82NA+4.8deg-00ph-6.1735pix-0.50DC.bmp
Wrote file: pat-0.82NA+4.8deg-01ph-6.1735pix-0.50DC.bmp
Wrote file: pat-0.82NA+4.8deg-02ph-6.1735pix-0.50DC.bmp
Wrote file: pat-0.82NA+64.8deg-00ph-6.1735pix-0.50DC.bmp
Wrote file: pat-0.82NA+64.8deg-01ph-6.1735pix-0.50DC.bmp
Wrote file: pat-0.82NA+64.8deg-02ph-6.1735pix-0.50DC.bmp
Wrote file: pat-0.82NA+124.8deg-00ph-6.1735pix-0.50DC.bmp
Wrote file: pat-0.82NA+124.8deg-01ph-6.1735pix-0.50DC.bmp
Wrote file: pat-0.82NA+124.8deg-02ph-6.1735pix-0.50DC.bmp
488 NA 0.83
Wrote file: pat-0.83NA+4.8deg-00ph-6.0976pix-0.50DC.bmp
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Wrote file: pat-0.83NA+64.8deg-00ph-6.0976pix-0.50DC.bmp
Wrote file: pat-0.83NA+64.8deg-01ph-6.0976pix-0.50DC.bmp
Wrote file: pat-0.83NA+64.8deg-02ph-6.0976pix-0.50DC.bmp
Wrote file: pat-0.83NA+124.8deg-00ph-6.0976pix-0.50DC.bmp
Wrote file: pat-0.83NA+124.8deg-01ph-6.0976pix-0.50DC.bmp
Wrote file: pat-0.83NA+124.8deg-02ph-6.0976pix-0.50DC.bmp
488 NA 0.84
Wrote file: pat-0.84NA+4.8deg-00ph-6.0235pix-0.50DC.bmp
Wrote file: pat-0.84NA+4.8deg-01ph-6.0235pix-0.50DC.bmp
Wrote file: pat-0.84NA+4.8deg-02ph-6.0235pix-0.50DC.bmp
Wrote file: pat-0.84NA+64.8deg-00ph-6.0235pix-0.50DC.bmp
Wrote file: pat-0.84NA+64.8deg-01ph-6.0235pix-0.50DC.bmp
Wrote file: pat-0.84NA+64.8deg-02ph-6.0235pix-0.50DC.bmp
Wrote file: pat-0.84NA+124.8deg-00ph-6.0235pix-0.50DC.bmp
Wrote file: pat-0.84NA+124.8deg-01ph-6.0235pix-0.50DC.bmp
Wrote file: pat-0.84NA+124.8deg-02ph-6.0235pix-0.50DC.bmp
488 NA 0.85
Wrote file: pat-0.85NA+4.8deg-00ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+4.8deg-01ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+4.8deg-02ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+64.8deg-00ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+64.8deg-01ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+64.8deg-02ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+124.8deg-00ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+124.8deg-01ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+124.8deg-02ph-5.9512pix-0.50DC.bmp
561 NA 0.78
Wrote file: pat-0.78NA+4.8deg-00ph-7.4688pix-0.50DC.bmp
Wrote file: pat-0.78NA+4.8deg-01ph-7.4688pix-0.50DC.bmp
Wrote file: pat-0.78NA+4.8deg-02ph-7.4688pix-0.50DC.bmp
Wrote file: pat-0.78NA+64.8deg-00ph-7.4688pix-0.50DC.bmp
Wrote file: pat-0.78NA+64.8deg-01ph-7.4688pix-0.50DC.bmp
Wrote file: pat-0.78NA+64.8deg-02ph-7.4688pix-0.50DC.bmp
Wrote file: pat-0.78NA+124.8deg-00ph-7.4688pix-0.50DC.bmp
Wrote file: pat-0.78NA+124.8deg-01ph-7.4688pix-0.50DC.bmp
Wrote file: pat-0.78NA+124.8deg-02ph-7.4688pix-0.50DC.bmp
561 NA 0.79
Wrote file: pat-0.79NA+4.8deg-00ph-7.3723pix-0.50DC.bmp
Wrote file: pat-0.79NA+4.8deg-01ph-7.3723pix-0.50DC.bmp
Wrote file: pat-0.79NA+4.8deg-02ph-7.3723pix-0.50DC.bmp
Wrote file: pat-0.79NA+64.8deg-00ph-7.3723pix-0.50DC.bmp
Wrote file: pat-0.79NA+64.8deg-01ph-7.3723pix-0.50DC.bmp
Wrote file: pat-0.79NA+64.8deg-02ph-7.3723pix-0.50DC.bmp
Wrote file: pat-0.79NA+124.8deg-00ph-7.3723pix-0.50DC.bmp
Wrote file: pat-0.79NA+124.8deg-01ph-7.3723pix-0.50DC.bmp
Wrote file: pat-0.79NA+124.8deg-02ph-7.3723pix-0.50DC.bmp
561 NA 0.8
Wrote file: pat-0.80NA+4.8deg-00ph-7.2782pix-0.50DC.bmp
Wrote file: pat-0.80NA+4.8deg-01ph-7.2782pix-0.50DC.bmp
Wrote file: pat-0.80NA+4.8deg-02ph-7.2782pix-0.50DC.bmp
Wrote file: pat-0.80NA+64.8deg-00ph-7.2782pix-0.50DC.bmp
Wrote file: pat-0.80NA+64.8deg-01ph-7.2782pix-0.50DC.bmp
Wrote file: pat-0.80NA+64.8deg-02ph-7.2782pix-0.50DC.bmp
Wrote file: pat-0.80NA+124.8deg-00ph-7.2782pix-0.50DC.bmp
Wrote file: pat-0.80NA+124.8deg-01ph-7.2782pix-0.50DC.bmp
Wrote file: pat-0.80NA+124.8deg-02ph-7.2782pix-0.50DC.bmp
561 NA 0.81
Wrote file: pat-0.81NA+4.8deg-00ph-7.1864pix-0.50DC.bmp
Wrote file: pat-0.81NA+4.8deg-01ph-7.1864pix-0.50DC.bmp
Wrote file: pat-0.81NA+4.8deg-02ph-7.1864pix-0.50DC.bmp
Wrote file: pat-0.81NA+64.8deg-00ph-7.1864pix-0.50DC.bmp
Wrote file: pat-0.81NA+64.8deg-01ph-7.1864pix-0.50DC.bmp
Wrote file: pat-0.81NA+64.8deg-02ph-7.1864pix-0.50DC.bmp
Wrote file: pat-0.81NA+124.8deg-00ph-7.1864pix-0.50DC.bmp
Wrote file: pat-0.81NA+124.8deg-01ph-7.1864pix-0.50DC.bmp
Wrote file: pat-0.81NA+124.8deg-02ph-7.1864pix-0.50DC.bmp
561 NA 0.82
Wrote file: pat-0.82NA+4.8deg-00ph-7.0970pix-0.50DC.bmp
Wrote file: pat-0.82NA+4.8deg-01ph-7.0970pix-0.50DC.bmp
Wrote file: pat-0.82NA+4.8deg-02ph-7.0970pix-0.50DC.bmp
Wrote file: pat-0.82NA+64.8deg-00ph-7.0970pix-0.50DC.bmp
Wrote file: pat-0.82NA+64.8deg-01ph-7.0970pix-0.50DC.bmp
Wrote file: pat-0.82NA+64.8deg-02ph-7.0970pix-0.50DC.bmp
Wrote file: pat-0.82NA+124.8deg-00ph-7.0970pix-0.50DC.bmp
Wrote file: pat-0.82NA+124.8deg-01ph-7.0970pix-0.50DC.bmp
Wrote file: pat-0.82NA+124.8deg-02ph-7.0970pix-0.50DC.bmp
561 NA 0.83
Wrote file: pat-0.83NA+4.8deg-00ph-7.0097pix-0.50DC.bmp
Wrote file: pat-0.83NA+4.8deg-01ph-7.0097pix-0.50DC.bmp
Wrote file: pat-0.83NA+4.8deg-02ph-7.0097pix-0.50DC.bmp
Wrote file: pat-0.83NA+64.8deg-00ph-7.0097pix-0.50DC.bmp
Wrote file: pat-0.83NA+64.8deg-01ph-7.0097pix-0.50DC.bmp
Wrote file: pat-0.83NA+64.8deg-02ph-7.0097pix-0.50DC.bmp
Wrote file: pat-0.83NA+124.8deg-00ph-7.0097pix-0.50DC.bmp
Wrote file: pat-0.83NA+124.8deg-01ph-7.0097pix-0.50DC.bmp
Wrote file: pat-0.83NA+124.8deg-02ph-7.0097pix-0.50DC.bmp
561 NA 0.84
Wrote file: pat-0.84NA+4.8deg-00ph-6.9246pix-0.50DC.bmp
Wrote file: pat-0.84NA+4.8deg-01ph-6.9246pix-0.50DC.bmp
Wrote file: pat-0.84NA+4.8deg-02ph-6.9246pix-0.50DC.bmp
Wrote file: pat-0.84NA+64.8deg-00ph-6.9246pix-0.50DC.bmp
Wrote file: pat-0.84NA+64.8deg-01ph-6.9246pix-0.50DC.bmp
Wrote file: pat-0.84NA+64.8deg-02ph-6.9246pix-0.50DC.bmp
Wrote file: pat-0.84NA+124.8deg-00ph-6.9246pix-0.50DC.bmp
Wrote file: pat-0.84NA+124.8deg-01ph-6.9246pix-0.50DC.bmp
Wrote file: pat-0.84NA+124.8deg-02ph-6.9246pix-0.50DC.bmp
561 NA 0.85
Wrote file: pat-0.85NA+4.8deg-00ph-6.8415pix-0.50DC.bmp
Wrote file: pat-0.85NA+4.8deg-01ph-6.8415pix-0.50DC.bmp
Wrote file: pat-0.85NA+4.8deg-02ph-6.8415pix-0.50DC.bmp
Wrote file: pat-0.85NA+64.8deg-00ph-6.8415pix-0.50DC.bmp
Wrote file: pat-0.85NA+64.8deg-01ph-6.8415pix-0.50DC.bmp
Wrote file: pat-0.85NA+64.8deg-02ph-6.8415pix-0.50DC.bmp
Wrote file: pat-0.85NA+124.8deg-00ph-6.8415pix-0.50DC.bmp
Wrote file: pat-0.85NA+124.8deg-01ph-6.8415pix-0.50DC.bmp
Wrote file: pat-0.85NA+124.8deg-02ph-6.8415pix-0.50DC.bmp
SEQUENCES
A "48070 HHMI 10ms.seq11"
SEQUENCES_END

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1 "pat-0.84NA+64.8deg-02ph-6.9246pix-0.50DC.bmp"
1 "pat-0.84NA-6.0235pix-0.50DC_allangles.bmp"
1 "pat-0.84NA-6.9246pix-0.50DC_allangles.bmp"
1 "pat-0.85NA+124.8deg-00ph-5.9512pix-0.50DC.bmp"
1 "pat-0.85NA+124.8deg-00ph-6.8415pix-0.50DC.bmp"
1 "pat-0.85NA+124.8deg-01ph-5.9512pix-0.50DC.bmp"
1 "pat-0.85NA+124.8deg-01ph-6.8415pix-0.50DC.bmp"
1 "pat-0.85NA+124.8deg-02ph-5.9512pix-0.50DC.bmp"
1 "pat-0.85NA+124.8deg-02ph-6.8415pix-0.50DC.bmp"
1 "pat-0.85NA+4.8deg-00ph-5.9512pix-0.50DC.bmp"
1 "pat-0.85NA+4.8deg-00ph-6.8415pix-0.50DC.bmp"
1 "pat-0.85NA+4.8deg-01ph-5.9512pix-0.50DC.bmp"
1 "pat-0.85NA+4.8deg-01ph-6.8415pix-0.50DC.bmp"
1 "pat-0.85NA+4.8deg-02ph-5.9512pix-0.50DC.bmp"
1 "pat-0.85NA+4.8deg-02ph-6.8415pix-0.50DC.bmp"
1 "pat-0.85NA+64.8deg-00ph-5.9512pix-0.50DC.bmp"
1 "pat-0.85NA+64.8deg-00ph-6.8415pix-0.50DC.bmp"
1 "pat-0.85NA+64.8deg-01ph-5.9512pix-0.50DC.bmp"
1 "pat-0.85NA+64.8deg-01ph-6.8415pix-0.50DC.bmp"
1 "pat-0.85NA+64.8deg-02ph-5.9512pix-0.50DC.bmp"
1 "pat-0.85NA+64.8deg-02ph-6.8415pix-0.50DC.bmp"
1 "pat-0.85NA-5.9512pix-0.50DC_allangles.bmp"
1 "pat-0.85NA-6.8415pix-0.50DC_allangles.bmp"
IMAGES_END

DEFAULT "488 NA 0.78 +4.76 degrees"
[HWA

{(A,6) }
]

"488 NA 0.78 +64.76 degrees"
[HWA

{(A,12) }
]

"488 NA 0.78 +124.76 degrees"
[HWA

{(A,0) }
]

"488 SIM NA 0.78"
[HWA

<t(A,6) >
{f (A,6) }
<t(A,8) >
{f (A,8) }
<t(A,10) >
{f (A,10) }
<t(A,12) >
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<t(A,16) >
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<t(A,4) >
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"488 NA 0.78 All Orientations Triggered"
[HWA

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{f (A,18) }
]

"488 NA 0.78 All Orientations"
[HWA

{(A,18) }
]

"488 NA 0.79 +4.76 degrees"
[HWA

{(A,26) }
]

"488 NA 0.79 +64.76 degrees"
[HWA

{(A,32) }
]

"488 NA 0.79 +124.76 degrees"
[HWA

{(A,20) }
]

"488 SIM NA 0.79"
[HWA

<t(A,26) >
{f (A,26) }
<t(A,28) >
{f (A,28) }
<t(A,30) >
{f (A,30) }
<t(A,32) >
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<t(A,34) >
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<t(A,36) >
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<t(A,22) >
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<t(A,24) >
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]

"488 NA 0.79 All Orientations Triggered"
[HWA

<t(A,38) >
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]

"488 NA 0.79 All Orientations"
[HWA

{(A,38) }
]

"488 NA 0.8 +4.76 degrees"
[HWA

{(A,46) }
]

"488 NA 0.8 +64.76 degrees"
[HWA

{(A,52) }
]

"488 NA 0.8 +124.76 degrees"
[HWA

{(A,40) }
]

"488 SIM NA 0.8"
[HWA

<t(A,46) >
{f (A,46) }
<t(A,48) >
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<t(A,50) >
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<t(A,42) >
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]

"488 NA 0.8 All Orientations Triggered"
[HWA

<t(A,58) >
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]

"488 NA 0.8 All Orientations"
[HWA

{(A,58) }
]

"488 NA 0.81 +4.76 degrees"
[HWA

{(A,66) }
]

"488 NA 0.81 +64.76 degrees"
[HWA

{(A,72) }
]

"488 NA 0.81 +124.76 degrees"
[HWA

{(A,60) }
]

"488 SIM NA 0.81"
[HWA

<t(A,66) >
{f (A,66) }
<t(A,68) >
{f (A,68) }
<t(A,70) >
{f (A,70) }
<t(A,72) >
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<t(A,74) >
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<t(A,76) >
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<t(A,62) >
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<t(A,64) >
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]

"488 NA 0.81 All Orientations Triggered"
[HWA

<t(A,78) >
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]

"488 NA 0.81 All Orientations"
[HWA

{(A,78) }
]

"488 NA 0.82 +4.76 degrees"
[HWA

{(A,86) }
]

"488 NA 0.82 +64.76 degrees"
[HWA

{(A,92) }
]

"488 NA 0.82 +124.76 degrees"
[HWA

{(A,80) }
]

"488 SIM NA 0.82"
[HWA

<t(A,86) >
{f (A,86) }
<t(A,88) >
{f (A,88) }
<t(A,90) >
{f (A,90) }
<t(A,92) >
{f (A,92) }
<t(A,94) >
{f (A,94) }
<t(A,96) >
{f (A,96) }
<t(A,80) >
{f (A,80) }
<t(A,82) >
{f (A,82) }
<t(A,84) >
{f (A,84) }
]

"488 NA 0.82 All Orientations Triggered"
[HWA

<t(A,98) >
{f (A,98) }
]

"488 NA 0.82 All Orientations"
[HWA

{(A,98) }
]

"488 NA 0.83 +4.76 degrees"
[HWA

{(A,106) }
]

"488 NA 0.83 +64.76 degrees"
[HWA

{(A,112) }
]

"488 NA 0.83 +124.76 degrees"
[HWA

{(A,100) }
]

"488 SIM NA 0.83"
[HWA

<t(A,106) >
{f (A,106) }
<t(A,108) >
{f (A,108) }
<t(A,110) >
{f (A,110) }
<t(A,112) >
{f (A,112) }
<t(A,114) >
{f (A,114) }
<t(A,116) >
{f (A,116) }
<t(A,100) >
{f (A,100) }
<t(A,102) >
{f (A,102) }
<t(A,104) >
{f (A,104) }
]

"488 NA 0.83 All Orientations Triggered"
[HWA

<t(A,118) >
{f (A,118) }
]

"488 NA 0.83 All Orientations"
[HWA

{(A,118) }
]

"488 NA 0.84 +4.76 degrees"
[HWA

{(A,126) }
]

"488 NA 0.84 +64.76 degrees"
[HWA

{(A,132) }
]

"488 NA 0.84 +124.76 degrees"
[HWA

{(A,120) }
]

"488 SIM NA 0.84"
[HWA

<t(A,126) >
{f (A,126) }
<t(A,128) >
{f (A,128) }
<t(A,130) >
{f (A,130) }
<t(A,132) >
{f (A,132) }
<t(A,134) >
{f (A,134) }
<t(A,136) >
{f (A,136) }
<t(A,120) >
{f (A,120) }
<t(A,122) >
{f (A,122) }
<t(A,124) >
{f (A,124) }
]

"488 NA 0.84 All Orientations Triggered"
[HWA

<t(A,138) >
{f (A,138) }
]

"488 NA 0.84 All Orientations"
[HWA

{(A,138) }
]

"488 NA 0.85 +4.76 degrees"
[HWA

{(A,146) }
]

"488 NA 0.85 +64.76 degrees"
[HWA

{(A,152) }
]

"488 NA 0.85 +124.76 degrees"
[HWA

{(A,140) }
]

"488 SIM NA 0.85"
[HWA

<t(A,146) >
{f (A,146) }
<t(A,148) >
{f (A,148) }
<t(A,150) >
{f (A,150) }
<t(A,152) >
{f (A,152) }
<t(A,154) >
{f (A,154) }
<t(A,156) >
{f (A,156) }
<t(A,140) >
{f (A,140) }
<t(A,142) >
{f (A,142) }
<t(A,144) >
{f (A,144) }
]

"488 NA 0.85 All Orientations Triggered"
[HWA

<t(A,158) >
{f (A,158) }
]

"488 NA 0.85 All Orientations"
[HWA

{(A,158) }
]

"561 NA 0.78 +4.76 degrees"
[HWA

{(A,7) }
]

"561 NA 0.78 +64.76 degrees"
[HWA

{(A,13) }
]

"561 NA 0.78 +124.76 degrees"
[HWA

{(A,1) }
]

"561 SIM NA 0.78"
[HWA

<t(A,7) >
{f (A,7) }
<t(A,9) >
{f (A,9) }
<t(A,11) >
{f (A,11) }
<t(A,13) >
{f (A,13) }
<t(A,15) >
{f (A,15) }
<t(A,17) >
{f (A,17) }
<t(A,1) >
{f (A,1) }
<t(A,3) >
{f (A,3) }
<t(A,5) >
{f (A,5) }
]

"561 NA 0.78 All Orientations Triggered"
[HWA

<t(A,19) >
{f (A,19) }
]

"561 NA 0.78 All Orientations"
[HWA

{(A,19) }
]

"561 NA 0.79 +4.76 degrees"
[HWA

{(A,27) }
]

"561 NA 0.79 +64.76 degrees"
[HWA

{(A,33) }
]

"561 NA 0.79 +124.76 degrees"
[HWA

{(A,21) }
]

"561 SIM NA 0.79"
[HWA

<t(A,27) >
{f (A,27) }
<t(A,29) >
{f (A,29) }
<t(A,31) >
{f (A,31) }
<t(A,33) >
{f (A,33) }
<t(A,35) >
{f (A,35) }
<t(A,37) >
{f (A,37) }
<t(A,21) >
{f (A,21) }
<t(A,23) >
{f (A,23) }
<t(A,25) >
{f (A,25) }
]

"561 NA 0.79 All Orientations Triggered"
[HWA

<t(A,39) >
{f (A,39) }
]

"561 NA 0.79 All Orientations"
[HWA

{(A,39) }
]

"561 NA 0.8 +4.76 degrees"
[HWA

{(A,47) }
]

"561 NA 0.8 +64.76 degrees"
[HWA

{(A,53) }
]

"561 NA 0.8 +124.76 degrees"
[HWA

{(A,41) }
]

"561 SIM NA 0.8"
[HWA

<t(A,47) >
{f (A,47) }
<t(A,49) >
{f (A,49) }
<t(A,51) >
{f (A,51) }
<t(A,53) >
{f (A,53) }
<t(A,55) >
{f (A,55) }
<t(A,57) >
{f (A,57) }
<t(A,41) >
{f (A,41) }
<t(A,43) >
{f (A,43) }
<t(A,45) >
{f (A,45) }
]

"561 NA 0.8 All Orientations Triggered"
[HWA

<t(A,59) >
{f (A,59) }
]

"561 NA 0.8 All Orientations"
[HWA

{(A,59) }
]

"561 NA 0.81 +4.76 degrees"
[HWA

{(A,67) }
]

"561 NA 0.81 +64.76 degrees"
[HWA

{(A,73) }
]

"561 NA 0.81 +124.76 degrees"
[HWA

{(A,61) }
]

"561 SIM NA 0.81"
[HWA

<t(A,67) >
{f (A,67) }
<t(A,69) >
{f (A,69) }
<t(A,71) >
{f (A,71) }
<t(A,73) >
{f (A,73) }
<t(A,75) >
{f (A,75) }
<t(A,77) >
{f (A,77) }
<t(A,61) >
{f (A,61) }
<t(A,63) >
{f (A,63) }
<t(A,65) >
{f (A,65) }
]

"561 NA 0.81 All Orientations Triggered"
[HWA

<t(A,79) >
{f (A,79) }
]

"561 NA 0.81 All Orientations"
[HWA

{(A,79) }
]

"561 NA 0.82 +4.76 degrees"
[HWA

{(A,87) }
]

"561 NA 0.82 +64.76 degrees"
[HWA

{(A,93) }
]

"561 NA 0.82 +124.76 degrees"
[HWA

{(A,81) }
]

"561 SIM NA 0.82"
[HWA

<t(A,87) >
{f (A,87) }
<t(A,89) >
{f (A,89) }
<t(A,91) >
{f (A,91) }
<t(A,93) >
{f (A,93) }
<t(A,95) >
{f (A,95) }
<t(A,97) >
{f (A,97) }
<t(A,81) >
{f (A,81) }
<t(A,83) >
{f (A,83) }
<t(A,85) >
{f (A,85) }
]

"561 NA 0.82 All Orientations Triggered"
[HWA

<t(A,99) >
{f (A,99) }
]

"561 NA 0.82 All Orientations"
[HWA

{(A,99) }
]

"561 NA 0.83 +4.76 degrees"
[HWA

{(A,107) }
]

"561 NA 0.83 +64.76 degrees"
[HWA

{(A,113) }
]

"561 NA 0.83 +124.76 degrees"
[HWA

{(A,101) }
]

"561 SIM NA 0.83"
[HWA

<t(A,107) >
{f (A,107) }
<t(A,109) >
{f (A,109) }
<t(A,111) >
{f (A,111) }
<t(A,113) >
{f (A,113) }
<t(A,115) >
{f (A,115) }
<t(A,117) >
{f (A,117) }
<t(A,101) >
{f (A,101) }
<t(A,103) >
{f (A,103) }
<t(A,105) >
{f (A,105) }
]

"561 NA 0.83 All Orientations Triggered"
[HWA

<t(A,119) >
{f (A,119) }
]

"561 NA 0.83 All Orientations"
[HWA

{(A,119) }
]

"561 NA 0.84 +4.76 degrees"
[HWA

{(A,127) }
]

"561 NA 0.84 +64.76 degrees"
[HWA

{(A,133) }
]

"561 NA 0.84 +124.76 degrees"
[HWA

{(A,121) }
]

"561 SIM NA 0.84"
[HWA

<t(A,127) >
{f (A,127) }
<t(A,129) >
{f (A,129) }
<t(A,131) >
{f (A,131) }
<t(A,133) >
{f (A,133) }
<t(A,135) >
{f (A,135) }
<t(A,137) >
{f (A,137) }
<t(A,121) >
{f (A,121) }
<t(A,123) >
{f (A,123) }
<t(A,125) >
{f (A,125) }
]

"561 NA 0.84 All Orientations Triggered"
[HWA

<t(A,139) >
{f (A,139) }
]

"561 NA 0.84 All Orientations"
[HWA

{(A,139) }
]

"561 NA 0.85 +4.76 degrees"
[HWA

{(A,147) }
]

"561 NA 0.85 +64.76 degrees"
[HWA

{(A,153) }
]

"561 NA 0.85 +124.76 degrees"
[HWA

{(A,141) }
]

"561 SIM NA 0.85"
[HWA

<t(A,147) >
{f (A,147) }
<t(A,149) >
{f (A,149) }
<t(A,151) >
{f (A,151) }
<t(A,153) >
{f (A,153) }
<t(A,155) >
{f (A,155) }
<t(A,157) >
{f (A,157) }
<t(A,141) >
{f (A,141) }
<t(A,143) >
{f (A,143) }
<t(A,145) >
{f (A,145) }
]

"561 NA 0.85 All Orientations Triggered"
[HWA

<t(A,159) >
{f (A,159) }
]

"561 NA 0.85 All Orientations"
[HWA

{(A,159) }
]

``````
``````

In [363]:

#Super SIM
onfrac = 0.5
num_angles = 3

num_phases = 24

wl = 488

name = 'SIM{}_2D_newalgo'.format(wl)
#open zip file, make sure the compression is set to ZIP_DEFLATED (8)
with zipfile.ZipFile('{}.repz11'.format(name), 'w', compression=zipfile.ZIP_DEFLATED) as myzip:

opt = False

my_dir = os.path.join('{}'.format(name),'')
if not os.path.isdir(my_dir):
print('Making '+my_dir)
os.mkdir(my_dir)

NAs = linspace(0.78,0.85,8)

ROlist = []

seq = '48070 HHMI 10ms.seq11'

myzip.write(os.path.join('HHMI_R11_Seq',seq),arcname=seq)

for NA in NAs:
print('NA {}'.format(NA))

iperiod = ideal_period(wl,NA=NA)
super_RO = RunningOrder('Super SIM NA {}'.format(NA))
reg_RO = RunningOrder('SIM NA {}'.format(NA))

RO_all_t = RunningOrder('NA {} All Orientations Triggered'.format(NA))
RO_all = RunningOrder('NA {} All Orientations'.format(NA),triggered=False)

patall =zeros((1536, 2048))

for angle in my_angles:

#calculate degree from angle for filename

RO1orient = RunningOrder('NA {} {:+.2f} degrees'.format(NA, degree), triggered=False)

#optimize the angle
if opt:
print('Optimizing angle = {:+.2f} degrees'.format(degree))
my_per = opt_period(iperiod,angle)[0]
else:
my_per = iperiod

for phase in range(num_phases):
#generate pattern, but with two periods
pat = pattern_gen(angle, my_per,onfrac=onfrac,phase_idx=phase,nphases=num_phases,SIM_2D=False)

#make image object
pat_img = Image.fromarray((pat*255).astype('uint8'),mode='L')

#generate filename, put orientation in front, so that its consistent
name = 'pat-{:.2f}NA{:+.1f}deg-{:02d}ph-{:.4f}pix-{:.2f}DC.bmp'.format(NA, degree,phase,my_per,onfrac)

#convert to binary and save
pat_img.convert('1').save(os.path.join(my_dir,name))

#move to zip file and save
myzip.write(os.path.join(my_dir,name),arcname=name)

if not phase:
patall += pat

#only pull the first three phases so that we can do regular SIM too
if (phase % (num_phases//6) == 0) and (phase/num_phases*2 < 1):

print('Wrote file: {}'.format(name))

ROlist.append(RO1orient)

#make image object for all
patall_img = Image.fromarray((patall/num_angles*255).astype('uint8'),mode='L')

#generate filename, put orientation in front, so that its consistent
nameall = 'pat-{:.2f}NA-{:.4f}pix-{:.2f}DC_allangles.bmp'.format(NA,my_per,onfrac)

#convert to binary and save
patall_img.convert('1').save(os.path.join(my_dir,nameall))

#move to zip file and save
myzip.write(os.path.join(my_dir,nameall),arcname=nameall)

ROlist.append(super_RO)
ROlist.append(reg_RO)
ROlist.append(RO_all_t)
ROlist.append(RO_all)

my_Rep = Repetoire(ROlist)

#write the rep file
with open(os.path.join(my_dir,'{}.rep'.format(name)),'w') as repfile:
repfile.write(str(my_Rep))

#now add the file to the zip
myzip.write(os.path.join(my_dir,'{}.rep'.format(name)),arcname='{}.rep'.format(name))

print(my_Rep)

``````
``````

Making SIM488_2D_newalgo\
NA 0.78
Wrote file: pat-0.78NA+4.8deg-00ph-6.4970pix-0.50DC.bmp
Wrote file: pat-0.78NA+4.8deg-01ph-6.4970pix-0.50DC.bmp
Wrote file: pat-0.78NA+4.8deg-02ph-6.4970pix-0.50DC.bmp
Wrote file: pat-0.78NA+4.8deg-03ph-6.4970pix-0.50DC.bmp
Wrote file: pat-0.78NA+4.8deg-04ph-6.4970pix-0.50DC.bmp
Wrote file: pat-0.78NA+4.8deg-05ph-6.4970pix-0.50DC.bmp
Wrote file: pat-0.78NA+4.8deg-06ph-6.4970pix-0.50DC.bmp
Wrote file: pat-0.78NA+4.8deg-07ph-6.4970pix-0.50DC.bmp
Wrote file: pat-0.78NA+4.8deg-08ph-6.4970pix-0.50DC.bmp
Wrote file: pat-0.78NA+4.8deg-09ph-6.4970pix-0.50DC.bmp
Wrote file: pat-0.78NA+4.8deg-10ph-6.4970pix-0.50DC.bmp
Wrote file: pat-0.78NA+4.8deg-11ph-6.4970pix-0.50DC.bmp
Wrote file: pat-0.78NA+4.8deg-12ph-6.4970pix-0.50DC.bmp
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NA 0.79
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NA 0.8
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NA 0.81
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NA 0.82
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NA 0.83
Wrote file: pat-0.83NA+4.8deg-00ph-6.0976pix-0.50DC.bmp
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NA 0.84
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Wrote file: pat-0.84NA+124.8deg-08ph-6.0235pix-0.50DC.bmp
Wrote file: pat-0.84NA+124.8deg-09ph-6.0235pix-0.50DC.bmp
Wrote file: pat-0.84NA+124.8deg-10ph-6.0235pix-0.50DC.bmp
Wrote file: pat-0.84NA+124.8deg-11ph-6.0235pix-0.50DC.bmp
Wrote file: pat-0.84NA+124.8deg-12ph-6.0235pix-0.50DC.bmp
Wrote file: pat-0.84NA+124.8deg-13ph-6.0235pix-0.50DC.bmp
Wrote file: pat-0.84NA+124.8deg-14ph-6.0235pix-0.50DC.bmp
Wrote file: pat-0.84NA+124.8deg-15ph-6.0235pix-0.50DC.bmp
Wrote file: pat-0.84NA+124.8deg-16ph-6.0235pix-0.50DC.bmp
Wrote file: pat-0.84NA+124.8deg-17ph-6.0235pix-0.50DC.bmp
Wrote file: pat-0.84NA+124.8deg-18ph-6.0235pix-0.50DC.bmp
Wrote file: pat-0.84NA+124.8deg-19ph-6.0235pix-0.50DC.bmp
Wrote file: pat-0.84NA+124.8deg-20ph-6.0235pix-0.50DC.bmp
Wrote file: pat-0.84NA+124.8deg-21ph-6.0235pix-0.50DC.bmp
Wrote file: pat-0.84NA+124.8deg-22ph-6.0235pix-0.50DC.bmp
Wrote file: pat-0.84NA+124.8deg-23ph-6.0235pix-0.50DC.bmp
NA 0.85
Wrote file: pat-0.85NA+4.8deg-00ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+4.8deg-01ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+4.8deg-02ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+4.8deg-03ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+4.8deg-04ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+4.8deg-05ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+4.8deg-06ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+4.8deg-07ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+4.8deg-08ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+4.8deg-09ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+4.8deg-10ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+4.8deg-11ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+4.8deg-12ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+4.8deg-13ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+4.8deg-14ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+4.8deg-15ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+4.8deg-16ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+4.8deg-17ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+4.8deg-18ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+4.8deg-19ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+4.8deg-20ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+4.8deg-21ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+4.8deg-22ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+4.8deg-23ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+64.8deg-00ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+64.8deg-01ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+64.8deg-02ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+64.8deg-03ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+64.8deg-04ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+64.8deg-05ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+64.8deg-06ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+64.8deg-07ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+64.8deg-08ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+64.8deg-09ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+64.8deg-10ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+64.8deg-11ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+64.8deg-12ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+64.8deg-13ph-5.9512pix-0.50DC.bmp
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Wrote file: pat-0.85NA+64.8deg-15ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+64.8deg-16ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+64.8deg-17ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+64.8deg-18ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+64.8deg-19ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+64.8deg-20ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+64.8deg-21ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+64.8deg-22ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+64.8deg-23ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+124.8deg-00ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+124.8deg-01ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+124.8deg-02ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+124.8deg-03ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+124.8deg-04ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+124.8deg-05ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+124.8deg-06ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+124.8deg-07ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+124.8deg-08ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+124.8deg-09ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+124.8deg-10ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+124.8deg-11ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+124.8deg-12ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+124.8deg-13ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+124.8deg-14ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+124.8deg-15ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+124.8deg-16ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+124.8deg-17ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+124.8deg-18ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+124.8deg-19ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+124.8deg-20ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+124.8deg-21ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+124.8deg-22ph-5.9512pix-0.50DC.bmp
Wrote file: pat-0.85NA+124.8deg-23ph-5.9512pix-0.50DC.bmp
SEQUENCES
A "48070 HHMI 10ms.seq11"
SEQUENCES_END

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1 "pat-0.85NA-5.9512pix-0.50DC_allangles.bmp"
IMAGES_END

DEFAULT "NA 0.78 +4.76 degrees"
[HWA

{(A,24) }
]

"NA 0.78 +64.76 degrees"
[HWA

{(A,48) }
]

"NA 0.78 +124.76 degrees"
[HWA

{(A,0) }
]

"Super SIM NA 0.78"
[HWA

<t(A,24) >
{f (A,24) }
<t(A,25) >
{f (A,25) }
<t(A,26) >
{f (A,26) }
<t(A,27) >
{f (A,27) }
<t(A,28) >
{f (A,28) }
<t(A,29) >
{f (A,29) }
<t(A,30) >
{f (A,30) }
<t(A,31) >
{f (A,31) }
<t(A,32) >
{f (A,32) }
<t(A,33) >
{f (A,33) }
<t(A,34) >
{f (A,34) }
<t(A,35) >
{f (A,35) }
<t(A,36) >
{f (A,36) }
<t(A,37) >
{f (A,37) }
<t(A,38) >
{f (A,38) }
<t(A,39) >
{f (A,39) }
<t(A,40) >
{f (A,40) }
<t(A,41) >
{f (A,41) }
<t(A,42) >
{f (A,42) }
<t(A,43) >
{f (A,43) }
<t(A,44) >
{f (A,44) }
<t(A,45) >
{f (A,45) }
<t(A,46) >
{f (A,46) }
<t(A,47) >
{f (A,47) }
<t(A,48) >
{f (A,48) }
<t(A,49) >
{f (A,49) }
<t(A,50) >
{f (A,50) }
<t(A,51) >
{f (A,51) }
<t(A,52) >
{f (A,52) }
<t(A,53) >
{f (A,53) }
<t(A,54) >
{f (A,54) }
<t(A,55) >
{f (A,55) }
<t(A,56) >
{f (A,56) }
<t(A,57) >
{f (A,57) }
<t(A,58) >
{f (A,58) }
<t(A,59) >
{f (A,59) }
<t(A,60) >
{f (A,60) }
<t(A,61) >
{f (A,61) }
<t(A,62) >
{f (A,62) }
<t(A,63) >
{f (A,63) }
<t(A,64) >
{f (A,64) }
<t(A,65) >
{f (A,65) }
<t(A,66) >
{f (A,66) }
<t(A,67) >
{f (A,67) }
<t(A,68) >
{f (A,68) }
<t(A,69) >
{f (A,69) }
<t(A,70) >
{f (A,70) }
<t(A,71) >
{f (A,71) }
<t(A,0) >
{f (A,0) }
<t(A,1) >
{f (A,1) }
<t(A,2) >
{f (A,2) }
<t(A,3) >
{f (A,3) }
<t(A,4) >
{f (A,4) }
<t(A,5) >
{f (A,5) }
<t(A,6) >
{f (A,6) }
<t(A,7) >
{f (A,7) }
<t(A,8) >
{f (A,8) }
<t(A,9) >
{f (A,9) }
<t(A,10) >
{f (A,10) }
<t(A,11) >
{f (A,11) }
<t(A,12) >
{f (A,12) }
<t(A,13) >
{f (A,13) }
<t(A,14) >
{f (A,14) }
<t(A,15) >
{f (A,15) }
<t(A,16) >
{f (A,16) }
<t(A,17) >
{f (A,17) }
<t(A,18) >
{f (A,18) }
<t(A,19) >
{f (A,19) }
<t(A,20) >
{f (A,20) }
<t(A,21) >
{f (A,21) }
<t(A,22) >
{f (A,22) }
<t(A,23) >
{f (A,23) }
]

"SIM NA 0.78"
[HWA

<t(A,24) >
{f (A,24) }
<t(A,28) >
{f (A,28) }
<t(A,32) >
{f (A,32) }
<t(A,48) >
{f (A,48) }
<t(A,52) >
{f (A,52) }
<t(A,56) >
{f (A,56) }
<t(A,0) >
{f (A,0) }
<t(A,4) >
{f (A,4) }
<t(A,8) >
{f (A,8) }
]

"NA 0.78 All Orientations Triggered"
[HWA

<t(A,72) >
{f (A,72) }
]

"NA 0.78 All Orientations"
[HWA

{(A,72) }
]

"NA 0.79 +4.76 degrees"
[HWA

{(A,97) }
]

"NA 0.79 +64.76 degrees"
[HWA

{(A,121) }
]

"NA 0.79 +124.76 degrees"
[HWA

{(A,73) }
]

"Super SIM NA 0.79"
[HWA

<t(A,97) >
{f (A,97) }
<t(A,98) >
{f (A,98) }
<t(A,99) >
{f (A,99) }
<t(A,100) >
{f (A,100) }
<t(A,101) >
{f (A,101) }
<t(A,102) >
{f (A,102) }
<t(A,103) >
{f (A,103) }
<t(A,104) >
{f (A,104) }
<t(A,105) >
{f (A,105) }
<t(A,106) >
{f (A,106) }
<t(A,107) >
{f (A,107) }
<t(A,108) >
{f (A,108) }
<t(A,109) >
{f (A,109) }
<t(A,110) >
{f (A,110) }
<t(A,111) >
{f (A,111) }
<t(A,112) >
{f (A,112) }
<t(A,113) >
{f (A,113) }
<t(A,114) >
{f (A,114) }
<t(A,115) >
{f (A,115) }
<t(A,116) >
{f (A,116) }
<t(A,117) >
{f (A,117) }
<t(A,118) >
{f (A,118) }
<t(A,119) >
{f (A,119) }
<t(A,120) >
{f (A,120) }
<t(A,121) >
{f (A,121) }
<t(A,122) >
{f (A,122) }
<t(A,123) >
{f (A,123) }
<t(A,124) >
{f (A,124) }
<t(A,125) >
{f (A,125) }
<t(A,126) >
{f (A,126) }
<t(A,127) >
{f (A,127) }
<t(A,128) >
{f (A,128) }
<t(A,129) >
{f (A,129) }
<t(A,130) >
{f (A,130) }
<t(A,131) >
{f (A,131) }
<t(A,132) >
{f (A,132) }
<t(A,133) >
{f (A,133) }
<t(A,134) >
{f (A,134) }
<t(A,135) >
{f (A,135) }
<t(A,136) >
{f (A,136) }
<t(A,137) >
{f (A,137) }
<t(A,138) >
{f (A,138) }
<t(A,139) >
{f (A,139) }
<t(A,140) >
{f (A,140) }
<t(A,141) >
{f (A,141) }
<t(A,142) >
{f (A,142) }
<t(A,143) >
{f (A,143) }
<t(A,144) >
{f (A,144) }
<t(A,73) >
{f (A,73) }
<t(A,74) >
{f (A,74) }
<t(A,75) >
{f (A,75) }
<t(A,76) >
{f (A,76) }
<t(A,77) >
{f (A,77) }
<t(A,78) >
{f (A,78) }
<t(A,79) >
{f (A,79) }
<t(A,80) >
{f (A,80) }
<t(A,81) >
{f (A,81) }
<t(A,82) >
{f (A,82) }
<t(A,83) >
{f (A,83) }
<t(A,84) >
{f (A,84) }
<t(A,85) >
{f (A,85) }
<t(A,86) >
{f (A,86) }
<t(A,87) >
{f (A,87) }
<t(A,88) >
{f (A,88) }
<t(A,89) >
{f (A,89) }
<t(A,90) >
{f (A,90) }
<t(A,91) >
{f (A,91) }
<t(A,92) >
{f (A,92) }
<t(A,93) >
{f (A,93) }
<t(A,94) >
{f (A,94) }
<t(A,95) >
{f (A,95) }
<t(A,96) >
{f (A,96) }
]

"SIM NA 0.79"
[HWA

<t(A,97) >
{f (A,97) }
<t(A,101) >
{f (A,101) }
<t(A,105) >
{f (A,105) }
<t(A,121) >
{f (A,121) }
<t(A,125) >
{f (A,125) }
<t(A,129) >
{f (A,129) }
<t(A,73) >
{f (A,73) }
<t(A,77) >
{f (A,77) }
<t(A,81) >
{f (A,81) }
]

"NA 0.79 All Orientations Triggered"
[HWA

<t(A,145) >
{f (A,145) }
]

"NA 0.79 All Orientations"
[HWA

{(A,145) }
]

"NA 0.8 +4.76 degrees"
[HWA

{(A,170) }
]

"NA 0.8 +64.76 degrees"
[HWA

{(A,194) }
]

"NA 0.8 +124.76 degrees"
[HWA

{(A,146) }
]

"Super SIM NA 0.8"
[HWA

<t(A,170) >
{f (A,170) }
<t(A,171) >
{f (A,171) }
<t(A,172) >
{f (A,172) }
<t(A,173) >
{f (A,173) }
<t(A,174) >
{f (A,174) }
<t(A,175) >
{f (A,175) }
<t(A,176) >
{f (A,176) }
<t(A,177) >
{f (A,177) }
<t(A,178) >
{f (A,178) }
<t(A,179) >
{f (A,179) }
<t(A,180) >
{f (A,180) }
<t(A,181) >
{f (A,181) }
<t(A,182) >
{f (A,182) }
<t(A,183) >
{f (A,183) }
<t(A,184) >
{f (A,184) }
<t(A,185) >
{f (A,185) }
<t(A,186) >
{f (A,186) }
<t(A,187) >
{f (A,187) }
<t(A,188) >
{f (A,188) }
<t(A,189) >
{f (A,189) }
<t(A,190) >
{f (A,190) }
<t(A,191) >
{f (A,191) }
<t(A,192) >
{f (A,192) }
<t(A,193) >
{f (A,193) }
<t(A,194) >
{f (A,194) }
<t(A,195) >
{f (A,195) }
<t(A,196) >
{f (A,196) }
<t(A,197) >
{f (A,197) }
<t(A,198) >
{f (A,198) }
<t(A,199) >
{f (A,199) }
<t(A,200) >
{f (A,200) }
<t(A,201) >
{f (A,201) }
<t(A,202) >
{f (A,202) }
<t(A,203) >
{f (A,203) }
<t(A,204) >
{f (A,204) }
<t(A,205) >
{f (A,205) }
<t(A,206) >
{f (A,206) }
<t(A,207) >
{f (A,207) }
<t(A,208) >
{f (A,208) }
<t(A,209) >
{f (A,209) }
<t(A,210) >
{f (A,210) }
<t(A,211) >
{f (A,211) }
<t(A,212) >
{f (A,212) }
<t(A,213) >
{f (A,213) }
<t(A,214) >
{f (A,214) }
<t(A,215) >
{f (A,215) }
<t(A,216) >
{f (A,216) }
<t(A,217) >
{f (A,217) }
<t(A,146) >
{f (A,146) }
<t(A,147) >
{f (A,147) }
<t(A,148) >
{f (A,148) }
<t(A,149) >
{f (A,149) }
<t(A,150) >
{f (A,150) }
<t(A,151) >
{f (A,151) }
<t(A,152) >
{f (A,152) }
<t(A,153) >
{f (A,153) }
<t(A,154) >
{f (A,154) }
<t(A,155) >
{f (A,155) }
<t(A,156) >
{f (A,156) }
<t(A,157) >
{f (A,157) }
<t(A,158) >
{f (A,158) }
<t(A,159) >
{f (A,159) }
<t(A,160) >
{f (A,160) }
<t(A,161) >
{f (A,161) }
<t(A,162) >
{f (A,162) }
<t(A,163) >
{f (A,163) }
<t(A,164) >
{f (A,164) }
<t(A,165) >
{f (A,165) }
<t(A,166) >
{f (A,166) }
<t(A,167) >
{f (A,167) }
<t(A,168) >
{f (A,168) }
<t(A,169) >
{f (A,169) }
]

"SIM NA 0.8"
[HWA

<t(A,170) >
{f (A,170) }
<t(A,174) >
{f (A,174) }
<t(A,178) >
{f (A,178) }
<t(A,194) >
{f (A,194) }
<t(A,198) >
{f (A,198) }
<t(A,202) >
{f (A,202) }
<t(A,146) >
{f (A,146) }
<t(A,150) >
{f (A,150) }
<t(A,154) >
{f (A,154) }
]

"NA 0.8 All Orientations Triggered"
[HWA

<t(A,218) >
{f (A,218) }
]

"NA 0.8 All Orientations"
[HWA

{(A,218) }
]

"NA 0.81 +4.76 degrees"
[HWA

{(A,243) }
]

"NA 0.81 +64.76 degrees"
[HWA

{(A,267) }
]

"NA 0.81 +124.76 degrees"
[HWA

{(A,219) }
]

"Super SIM NA 0.81"
[HWA

<t(A,243) >
{f (A,243) }
<t(A,244) >
{f (A,244) }
<t(A,245) >
{f (A,245) }
<t(A,246) >
{f (A,246) }
<t(A,247) >
{f (A,247) }
<t(A,248) >
{f (A,248) }
<t(A,249) >
{f (A,249) }
<t(A,250) >
{f (A,250) }
<t(A,251) >
{f (A,251) }
<t(A,252) >
{f (A,252) }
<t(A,253) >
{f (A,253) }
<t(A,254) >
{f (A,254) }
<t(A,255) >
{f (A,255) }
<t(A,256) >
{f (A,256) }
<t(A,257) >
{f (A,257) }
<t(A,258) >
{f (A,258) }
<t(A,259) >
{f (A,259) }
<t(A,260) >
{f (A,260) }
<t(A,261) >
{f (A,261) }
<t(A,262) >
{f (A,262) }
<t(A,263) >
{f (A,263) }
<t(A,264) >
{f (A,264) }
<t(A,265) >
{f (A,265) }
<t(A,266) >
{f (A,266) }
<t(A,267) >
{f (A,267) }
<t(A,268) >
{f (A,268) }
<t(A,269) >
{f (A,269) }
<t(A,270) >
{f (A,270) }
<t(A,271) >
{f (A,271) }
<t(A,272) >
{f (A,272) }
<t(A,273) >
{f (A,273) }
<t(A,274) >
{f (A,274) }
<t(A,275) >
{f (A,275) }
<t(A,276) >
{f (A,276) }
<t(A,277) >
{f (A,277) }
<t(A,278) >
{f (A,278) }
<t(A,279) >
{f (A,279) }
<t(A,280) >
{f (A,280) }
<t(A,281) >
{f (A,281) }
<t(A,282) >
{f (A,282) }
<t(A,283) >
{f (A,283) }
<t(A,284) >
{f (A,284) }
<t(A,285) >
{f (A,285) }
<t(A,286) >
{f (A,286) }
<t(A,287) >
{f (A,287) }
<t(A,288) >
{f (A,288) }
<t(A,289) >
{f (A,289) }
<t(A,290) >
{f (A,290) }
<t(A,219) >
{f (A,219) }
<t(A,220) >
{f (A,220) }
<t(A,221) >
{f (A,221) }
<t(A,222) >
{f (A,222) }
<t(A,223) >
{f (A,223) }
<t(A,224) >
{f (A,224) }
<t(A,225) >
{f (A,225) }
<t(A,226) >
{f (A,226) }
<t(A,227) >
{f (A,227) }
<t(A,228) >
{f (A,228) }
<t(A,229) >
{f (A,229) }
<t(A,230) >
{f (A,230) }
<t(A,231) >
{f (A,231) }
<t(A,232) >
{f (A,232) }
<t(A,233) >
{f (A,233) }
<t(A,234) >
{f (A,234) }
<t(A,235) >
{f (A,235) }
<t(A,236) >
{f (A,236) }
<t(A,237) >
{f (A,237) }
<t(A,238) >
{f (A,238) }
<t(A,239) >
{f (A,239) }
<t(A,240) >
{f (A,240) }
<t(A,241) >
{f (A,241) }
<t(A,242) >
{f (A,242) }
]

"SIM NA 0.81"
[HWA

<t(A,243) >
{f (A,243) }
<t(A,247) >
{f (A,247) }
<t(A,251) >
{f (A,251) }
<t(A,267) >
{f (A,267) }
<t(A,271) >
{f (A,271) }
<t(A,275) >
{f (A,275) }
<t(A,219) >
{f (A,219) }
<t(A,223) >
{f (A,223) }
<t(A,227) >
{f (A,227) }
]

"NA 0.81 All Orientations Triggered"
[HWA

<t(A,291) >
{f (A,291) }
]

"NA 0.81 All Orientations"
[HWA

{(A,291) }
]

"NA 0.82 +4.76 degrees"
[HWA

{(A,316) }
]

"NA 0.82 +64.76 degrees"
[HWA

{(A,340) }
]

"NA 0.82 +124.76 degrees"
[HWA

{(A,292) }
]

"Super SIM NA 0.82"
[HWA

<t(A,316) >
{f (A,316) }
<t(A,317) >
{f (A,317) }
<t(A,318) >
{f (A,318) }
<t(A,319) >
{f (A,319) }
<t(A,320) >
{f (A,320) }
<t(A,321) >
{f (A,321) }
<t(A,322) >
{f (A,322) }
<t(A,323) >
{f (A,323) }
<t(A,324) >
{f (A,324) }
<t(A,325) >
{f (A,325) }
<t(A,326) >
{f (A,326) }
<t(A,327) >
{f (A,327) }
<t(A,328) >
{f (A,328) }
<t(A,329) >
{f (A,329) }
<t(A,330) >
{f (A,330) }
<t(A,331) >
{f (A,331) }
<t(A,332) >
{f (A,332) }
<t(A,333) >
{f (A,333) }
<t(A,334) >
{f (A,334) }
<t(A,335) >
{f (A,335) }
<t(A,336) >
{f (A,336) }
<t(A,337) >
{f (A,337) }
<t(A,338) >
{f (A,338) }
<t(A,339) >
{f (A,339) }
<t(A,340) >
{f (A,340) }
<t(A,341) >
{f (A,341) }
<t(A,342) >
{f (A,342) }
<t(A,343) >
{f (A,343) }
<t(A,344) >
{f (A,344) }
<t(A,345) >
{f (A,345) }
<t(A,346) >
{f (A,346) }
<t(A,347) >
{f (A,347) }
<t(A,348) >
{f (A,348) }
<t(A,349) >
{f (A,349) }
<t(A,350) >
{f (A,350) }
<t(A,351) >
{f (A,351) }
<t(A,352) >
{f (A,352) }
<t(A,353) >
{f (A,353) }
<t(A,354) >
{f (A,354) }
<t(A,355) >
{f (A,355) }
<t(A,356) >
{f (A,356) }
<t(A,357) >
{f (A,357) }
<t(A,358) >
{f (A,358) }
<t(A,359) >
{f (A,359) }
<t(A,360) >
{f (A,360) }
<t(A,361) >
{f (A,361) }
<t(A,362) >
{f (A,362) }
<t(A,363) >
{f (A,363) }
<t(A,292) >
{f (A,292) }
<t(A,293) >
{f (A,293) }
<t(A,294) >
{f (A,294) }
<t(A,295) >
{f (A,295) }
<t(A,296) >
{f (A,296) }
<t(A,297) >
{f (A,297) }
<t(A,298) >
{f (A,298) }
<t(A,299) >
{f (A,299) }
<t(A,300) >
{f (A,300) }
<t(A,301) >
{f (A,301) }
<t(A,302) >
{f (A,302) }
<t(A,303) >
{f (A,303) }
<t(A,304) >
{f (A,304) }
<t(A,305) >
{f (A,305) }
<t(A,306) >
{f (A,306) }
<t(A,307) >
{f (A,307) }
<t(A,308) >
{f (A,308) }
<t(A,309) >
{f (A,309) }
<t(A,310) >
{f (A,310) }
<t(A,311) >
{f (A,311) }
<t(A,312) >
{f (A,312) }
<t(A,313) >
{f (A,313) }
<t(A,314) >
{f (A,314) }
<t(A,315) >
{f (A,315) }
]

"SIM NA 0.82"
[HWA

<t(A,316) >
{f (A,316) }
<t(A,320) >
{f (A,320) }
<t(A,324) >
{f (A,324) }
<t(A,340) >
{f (A,340) }
<t(A,344) >
{f (A,344) }
<t(A,348) >
{f (A,348) }
<t(A,292) >
{f (A,292) }
<t(A,296) >
{f (A,296) }
<t(A,300) >
{f (A,300) }
]

"NA 0.82 All Orientations Triggered"
[HWA

<t(A,364) >
{f (A,364) }
]

"NA 0.82 All Orientations"
[HWA

{(A,364) }
]

"NA 0.83 +4.76 degrees"
[HWA

{(A,389) }
]

"NA 0.83 +64.76 degrees"
[HWA

{(A,413) }
]

"NA 0.83 +124.76 degrees"
[HWA

{(A,365) }
]

"Super SIM NA 0.83"
[HWA

<t(A,389) >
{f (A,389) }
<t(A,390) >
{f (A,390) }
<t(A,391) >
{f (A,391) }
<t(A,392) >
{f (A,392) }
<t(A,393) >
{f (A,393) }
<t(A,394) >
{f (A,394) }
<t(A,395) >
{f (A,395) }
<t(A,396) >
{f (A,396) }
<t(A,397) >
{f (A,397) }
<t(A,398) >
{f (A,398) }
<t(A,399) >
{f (A,399) }
<t(A,400) >
{f (A,400) }
<t(A,401) >
{f (A,401) }
<t(A,402) >
{f (A,402) }
<t(A,403) >
{f (A,403) }
<t(A,404) >
{f (A,404) }
<t(A,405) >
{f (A,405) }
<t(A,406) >
{f (A,406) }
<t(A,407) >
{f (A,407) }
<t(A,408) >
{f (A,408) }
<t(A,409) >
{f (A,409) }
<t(A,410) >
{f (A,410) }
<t(A,411) >
{f (A,411) }
<t(A,412) >
{f (A,412) }
<t(A,413) >
{f (A,413) }
<t(A,414) >
{f (A,414) }
<t(A,415) >
{f (A,415) }
<t(A,416) >
{f (A,416) }
<t(A,417) >
{f (A,417) }
<t(A,418) >
{f (A,418) }
<t(A,419) >
{f (A,419) }
<t(A,420) >
{f (A,420) }
<t(A,421) >
{f (A,421) }
<t(A,422) >
{f (A,422) }
<t(A,423) >
{f (A,423) }
<t(A,424) >
{f (A,424) }
<t(A,425) >
{f (A,425) }
<t(A,426) >
{f (A,426) }
<t(A,427) >
{f (A,427) }
<t(A,428) >
{f (A,428) }
<t(A,429) >
{f (A,429) }
<t(A,430) >
{f (A,430) }
<t(A,431) >
{f (A,431) }
<t(A,432) >
{f (A,432) }
<t(A,433) >
{f (A,433) }
<t(A,434) >
{f (A,434) }
<t(A,435) >
{f (A,435) }
<t(A,436) >
{f (A,436) }
<t(A,365) >
{f (A,365) }
<t(A,366) >
{f (A,366) }
<t(A,367) >
{f (A,367) }
<t(A,368) >
{f (A,368) }
<t(A,369) >
{f (A,369) }
<t(A,370) >
{f (A,370) }
<t(A,371) >
{f (A,371) }
<t(A,372) >
{f (A,372) }
<t(A,373) >
{f (A,373) }
<t(A,374) >
{f (A,374) }
<t(A,375) >
{f (A,375) }
<t(A,376) >
{f (A,376) }
<t(A,377) >
{f (A,377) }
<t(A,378) >
{f (A,378) }
<t(A,379) >
{f (A,379) }
<t(A,380) >
{f (A,380) }
<t(A,381) >
{f (A,381) }
<t(A,382) >
{f (A,382) }
<t(A,383) >
{f (A,383) }
<t(A,384) >
{f (A,384) }
<t(A,385) >
{f (A,385) }
<t(A,386) >
{f (A,386) }
<t(A,387) >
{f (A,387) }
<t(A,388) >
{f (A,388) }
]

"SIM NA 0.83"
[HWA

<t(A,389) >
{f (A,389) }
<t(A,393) >
{f (A,393) }
<t(A,397) >
{f (A,397) }
<t(A,413) >
{f (A,413) }
<t(A,417) >
{f (A,417) }
<t(A,421) >
{f (A,421) }
<t(A,365) >
{f (A,365) }
<t(A,369) >
{f (A,369) }
<t(A,373) >
{f (A,373) }
]

"NA 0.83 All Orientations Triggered"
[HWA

<t(A,437) >
{f (A,437) }
]

"NA 0.83 All Orientations"
[HWA

{(A,437) }
]

"NA 0.84 +4.76 degrees"
[HWA

{(A,462) }
]

"NA 0.84 +64.76 degrees"
[HWA

{(A,486) }
]

"NA 0.84 +124.76 degrees"
[HWA

{(A,438) }
]

"Super SIM NA 0.84"
[HWA

<t(A,462) >
{f (A,462) }
<t(A,463) >
{f (A,463) }
<t(A,464) >
{f (A,464) }
<t(A,465) >
{f (A,465) }
<t(A,466) >
{f (A,466) }
<t(A,467) >
{f (A,467) }
<t(A,468) >
{f (A,468) }
<t(A,469) >
{f (A,469) }
<t(A,470) >
{f (A,470) }
<t(A,471) >
{f (A,471) }
<t(A,472) >
{f (A,472) }
<t(A,473) >
{f (A,473) }
<t(A,474) >
{f (A,474) }
<t(A,475) >
{f (A,475) }
<t(A,476) >
{f (A,476) }
<t(A,477) >
{f (A,477) }
<t(A,478) >
{f (A,478) }
<t(A,479) >
{f (A,479) }
<t(A,480) >
{f (A,480) }
<t(A,481) >
{f (A,481) }
<t(A,482) >
{f (A,482) }
<t(A,483) >
{f (A,483) }
<t(A,484) >
{f (A,484) }
<t(A,485) >
{f (A,485) }
<t(A,486) >
{f (A,486) }
<t(A,487) >
{f (A,487) }
<t(A,488) >
{f (A,488) }
<t(A,489) >
{f (A,489) }
<t(A,490) >
{f (A,490) }
<t(A,491) >
{f (A,491) }
<t(A,492) >
{f (A,492) }
<t(A,493) >
{f (A,493) }
<t(A,494) >
{f (A,494) }
<t(A,495) >
{f (A,495) }
<t(A,496) >
{f (A,496) }
<t(A,497) >
{f (A,497) }
<t(A,498) >
{f (A,498) }
<t(A,499) >
{f (A,499) }
<t(A,500) >
{f (A,500) }
<t(A,501) >
{f (A,501) }
<t(A,502) >
{f (A,502) }
<t(A,503) >
{f (A,503) }
<t(A,504) >
{f (A,504) }
<t(A,505) >
{f (A,505) }
<t(A,506) >
{f (A,506) }
<t(A,507) >
{f (A,507) }
<t(A,508) >
{f (A,508) }
<t(A,509) >
{f (A,509) }
<t(A,438) >
{f (A,438) }
<t(A,439) >
{f (A,439) }
<t(A,440) >
{f (A,440) }
<t(A,441) >
{f (A,441) }
<t(A,442) >
{f (A,442) }
<t(A,443) >
{f (A,443) }
<t(A,444) >
{f (A,444) }
<t(A,445) >
{f (A,445) }
<t(A,446) >
{f (A,446) }
<t(A,447) >
{f (A,447) }
<t(A,448) >
{f (A,448) }
<t(A,449) >
{f (A,449) }
<t(A,450) >
{f (A,450) }
<t(A,451) >
{f (A,451) }
<t(A,452) >
{f (A,452) }
<t(A,453) >
{f (A,453) }
<t(A,454) >
{f (A,454) }
<t(A,455) >
{f (A,455) }
<t(A,456) >
{f (A,456) }
<t(A,457) >
{f (A,457) }
<t(A,458) >
{f (A,458) }
<t(A,459) >
{f (A,459) }
<t(A,460) >
{f (A,460) }
<t(A,461) >
{f (A,461) }
]

"SIM NA 0.84"
[HWA

<t(A,462) >
{f (A,462) }
<t(A,466) >
{f (A,466) }
<t(A,470) >
{f (A,470) }
<t(A,486) >
{f (A,486) }
<t(A,490) >
{f (A,490) }
<t(A,494) >
{f (A,494) }
<t(A,438) >
{f (A,438) }
<t(A,442) >
{f (A,442) }
<t(A,446) >
{f (A,446) }
]

"NA 0.84 All Orientations Triggered"
[HWA

<t(A,510) >
{f (A,510) }
]

"NA 0.84 All Orientations"
[HWA

{(A,510) }
]

"NA 0.85 +4.76 degrees"
[HWA

{(A,535) }
]

"NA 0.85 +64.76 degrees"
[HWA

{(A,559) }
]

"NA 0.85 +124.76 degrees"
[HWA

{(A,511) }
]

"Super SIM NA 0.85"
[HWA

<t(A,535) >
{f (A,535) }
<t(A,536) >
{f (A,536) }
<t(A,537) >
{f (A,537) }
<t(A,538) >
{f (A,538) }
<t(A,539) >
{f (A,539) }
<t(A,540) >
{f (A,540) }
<t(A,541) >
{f (A,541) }
<t(A,542) >
{f (A,542) }
<t(A,543) >
{f (A,543) }
<t(A,544) >
{f (A,544) }
<t(A,545) >
{f (A,545) }
<t(A,546) >
{f (A,546) }
<t(A,547) >
{f (A,547) }
<t(A,548) >
{f (A,548) }
<t(A,549) >
{f (A,549) }
<t(A,550) >
{f (A,550) }
<t(A,551) >
{f (A,551) }
<t(A,552) >
{f (A,552) }
<t(A,553) >
{f (A,553) }
<t(A,554) >
{f (A,554) }
<t(A,555) >
{f (A,555) }
<t(A,556) >
{f (A,556) }
<t(A,557) >
{f (A,557) }
<t(A,558) >
{f (A,558) }
<t(A,559) >
{f (A,559) }
<t(A,560) >
{f (A,560) }
<t(A,561) >
{f (A,561) }
<t(A,562) >
{f (A,562) }
<t(A,563) >
{f (A,563) }
<t(A,564) >
{f (A,564) }
<t(A,565) >
{f (A,565) }
<t(A,566) >
{f (A,566) }
<t(A,567) >
{f (A,567) }
<t(A,568) >
{f (A,568) }
<t(A,569) >
{f (A,569) }
<t(A,570) >
{f (A,570) }
<t(A,571) >
{f (A,571) }
<t(A,572) >
{f (A,572) }
<t(A,573) >
{f (A,573) }
<t(A,574) >
{f (A,574) }
<t(A,575) >
{f (A,575) }
<t(A,576) >
{f (A,576) }
<t(A,577) >
{f (A,577) }
<t(A,578) >
{f (A,578) }
<t(A,579) >
{f (A,579) }
<t(A,580) >
{f (A,580) }
<t(A,581) >
{f (A,581) }
<t(A,582) >
{f (A,582) }
<t(A,511) >
{f (A,511) }
<t(A,512) >
{f (A,512) }
<t(A,513) >
{f (A,513) }
<t(A,514) >
{f (A,514) }
<t(A,515) >
{f (A,515) }
<t(A,516) >
{f (A,516) }
<t(A,517) >
{f (A,517) }
<t(A,518) >
{f (A,518) }
<t(A,519) >
{f (A,519) }
<t(A,520) >
{f (A,520) }
<t(A,521) >
{f (A,521) }
<t(A,522) >
{f (A,522) }
<t(A,523) >
{f (A,523) }
<t(A,524) >
{f (A,524) }
<t(A,525) >
{f (A,525) }
<t(A,526) >
{f (A,526) }
<t(A,527) >
{f (A,527) }
<t(A,528) >
{f (A,528) }
<t(A,529) >
{f (A,529) }
<t(A,530) >
{f (A,530) }
<t(A,531) >
{f (A,531) }
<t(A,532) >
{f (A,532) }
<t(A,533) >
{f (A,533) }
<t(A,534) >
{f (A,534) }
]

"SIM NA 0.85"
[HWA

<t(A,535) >
{f (A,535) }
<t(A,539) >
{f (A,539) }
<t(A,543) >
{f (A,543) }
<t(A,559) >
{f (A,559) }
<t(A,563) >
{f (A,563) }
<t(A,567) >
{f (A,567) }
<t(A,511) >
{f (A,511) }
<t(A,515) >
{f (A,515) }
<t(A,519) >
{f (A,519) }
]

"NA 0.85 All Orientations Triggered"
[HWA

<t(A,583) >
{f (A,583) }
]

"NA 0.85 All Orientations"
[HWA

{(A,583) }
]

``````
``````

In [ ]:

``````