notebook.community

Edit and run



In [1]:

    
%matplotlib inline
# import matplotlib as mpl
# mpl.use('Agg')

import os
import numpy as np
import scipy.cluster.hierarchy as sch
import pandas as pd
from sklearn.metrics.pairwise import pairwise_distances
from bionlp.util import io

DATA_PATH = '../../data/gesgnext'
TOP_K = 10
FMT = 'pdf'


simmt = io.read_df(os.path.join(DATA_PATH, 'simmt.npz'), with_idx=True, sparse_fmt='csr')
sgn_df = pd.read_csv(os.path.join(DATA_PATH, 'circos_data.csv'))
sgn_df = sgn_df.set_index('id')
# DATA_PATH = '/home/shankai/workspace/gesgnext/1507310705'
Z = io.read_npz(os.path.join(DATA_PATH, 'hrc_z.npz'))['data']
R = dict(io.read_npz(os.path.join(DATA_PATH, 'hrc_r.npz')))
cache_npz = io.read_npz(os.path.join(DATA_PATH, 'hrc_clustering.npz'))
data, dist_metric = cache_npz['data'], cache_npz['dist_metric']
pdist_params = dict([(k.lstrip('pdist_'), v) for k, v in cache_npz.iteritems() if k.startswith('pdist_')])
D = pairwise_distances(data, metric=dist_metric, **pdist_params)
np.fill_diagonal(D, 0)



In [ ]:

    
import itertools
import heapq

clt_dict, numclt, t, clt_q = {}, 0, 0.1, [(0, 'NULL')] * TOP_K
while (numclt != 1):
    clts = sch.fcluster(Z, t=t, criterion='distance')
    inconst = sch.inconsistent(Z, d=int(10*t))
    for i in xrange(1, len(set(clts)) + 1):
        clt = np.where(clts==i)[0]
        clt_str = ','.join(map(str, clt))
        if clt_dict.has_key(clt_str): continue
        clt_avgsim = D[clt[:,None], clt].mean() * clt.shape[0] / (1 + inconst[i,3])
        clt_dict[clt_str] = clt_avgsim
        clt_entry = (clt_avgsim, clt)
        try:
            heapq.heappushpop(clt_q, clt_entry)
        except Exception as e:
            print e
    numclt = len(set(clts))
    t += 0.1



In [3]:

    
import operator
import matplotlib.pyplot as plt

top_clts = map(operator.itemgetter(1), clt_q)
highlight_idx = np.concatenate(top_clts)
mask_idx = np.array([x for x in range(D.shape[0]) if x not in highlight_idx])
mat = np.copy(D)
np.fill_diagonal(D, 1), np.fill_diagonal(mat, 1)
# mat[mask_idx[:,None], mask_idx] = 0
matshow_params = dict([(k.lstrip('matshow_'), v) for k, v in cache_npz.iteritems() if k.startswith('matshow_')])

# Find the separated clusters
ordered_D = D[R['leaves'],:][:,R['leaves']]
clt_idx = [0]
for i in xrange(1, simmt.shape[0]+1):
    prev_i = i - 1
    if (i == simmt.shape[0] or (ordered_D[i,prev_i] == 0 and ordered_D[prev_i,i] == 0)):
        if (i - clt_idx[-1] < 3):
            clt_idx[-1] = i
            continue
        plt.matshow(ordered_D[clt_idx[-1]:i,clt_idx[-1]:i], aspect='auto', origin='lower', cmap=plt.cm.coolwarm, **matshow_params)
        clt_idx.append(i)

# ax = plt.axes()
# ax.matshow(D[R['leaves'],:][:,R['leaves']], aspect='auto', origin='lower', cmap=plt.cm.coolwarm, **matshow_params)
# plt.matshow(D[R['leaves'],:][:,R['leaves']], aspect='auto', origin='lower', cmap=plt.cm.coolwarm, **matshow_params)
# xtick_label, ytick_label = ax.set_xticks([]), ax.set_yticks([])
# plt.savefig('hrc_orig.%s'%FMT, format=FMT)

# ax = plt.axes()
# ax.matshow(mat[R['leaves'],:][:,R['leaves']], aspect='auto', origin='lower', cmap=plt.cm.coolwarm, **matshow_params)
# plt.matshow(mat[R['leaves'],:][:,R['leaves']], aspect='auto', origin='lower', cmap=plt.cm.coolwarm, **matshow_params)
# xtick_label, ytick_label = ax.set_xticks([]), ax.set_yticks([])
# plt.savefig('hrc_zoomin.%s'%FMT, format=FMT)









    



/home/shankai/.conda/envs/skyan/lib/python2.7/site-packages/matplotlib/pyplot.py:523: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (`matplotlib.pyplot.figure`) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam `figure.max_open_warning`).
  max_open_warning, RuntimeWarning)



In [5]:

    
from bionlp.util import func

idx_map = dict([(x, i) for i, x in enumerate(R['leaves'])])
# for i, (clt_str, score) in enumerate(func.sorted_dict(clt_dict)[::-1]):
#     if i not in [0,1,2,3,5,7,9,31,35,39]: continue
#     clt = np.array(map(int, clt_str.split(',')))
#
# clts = [map(int, R['leaves'][clt_idx[i]:clt_idx[i+1]]) for i in range(len(clt_idx)-1)]
# clts = [[4834,4843,4836,4840,4828,4832,6329,6336,6328,6330,4330],[1207,7703,1211,7691,1208,7702,1212,7690,6089,5554,5584,5389,5509,5551,5557],[2808,2809,2813,2815,2822,2826,2816,2817,5777,1147,1165,1171,8037,8038,8047,8048,1206,1205,1209,1210,7705,7704,7692,7693,2824,2825,2814,2818],[441,436,446,5039,5044,5049,1458,1466,1408,1416,1468,1476,276,234,7920,1469,1473,1409,1413,1459,1463,1457,1460,1461,1462,1464,1465,1410,1411,1414,1470,1471,1474],[7698,1216,7694,1215,7695,1219,7699,4226,4219,4220]]
clts = [[3076,3077,3064,3065,3068,3069,1319,3092,3099,3089,3096,3094,3101,3750,3747,3749,730,1178,1180,1177,1179,3103,3108],[2814,2816,2817,2818,2822,2826,2828,2835,706,993,987],[3534,4422,3495,3502,4426,3510,3503,3543,4434,3516,3540,3512,3536,4429,3515,3539,4428,3517,3541
,4431,3537,3538,3513,3514,3504,4433]]
for i, clt in enumerate(clts):
#     if i not in [2,3,4,7,8,9,10,11,13,14,19,21,22,34]: continue
    clt = np.array(clt)
##
# for i, (score, clt) in enumerate(clt_q):
    ordered_clt = np.array(map(operator.itemgetter(1), func.sorted_tuples([(idx_map[x], x) for x in clt], key_idx=0)))
#     ordered_clt = clt
#     print ordered_clt
    labels = ['|'.join(map(str, x)) for x in zip(sgn_df['subject'].loc[simmt.index[ordered_clt]], sgn_df['geo_id'].loc[simmt.index[ordered_clt]])]
#     clt, labels = zip(*func.sorted_tuples(zip(clt, labels), key_idx=1))
#     print zip(*func.sorted_tuples(zip(clt, labels), key_idx=1))
    if (len(set(labels)) == 1): continue
#     labels = ['|'.join(x)for x in zip(labels, map(str, ordered_clt))]
#     print ','.join(map(str, ordered_clt)) + '\n'
    ax = plt.axes()
    ax.matshow(mat[ordered_clt[:,None], ordered_clt], aspect='equal', origin='upper', cmap=plt.cm.coolwarm, alpha=0.8, vmin=-1, vmax=1)
#     plt.matshow(mat[ordered_clt[:,None], ordered_clt], aspect='auto', origin='upper', cmap=plt.cm.coolwarm, alpha=0.9)
    ax.tick_params(axis=u'both', which=u'both',length=0)
    ax.set_xticks(range(ordered_clt.shape[0])), ax.set_yticks(range(ordered_clt.shape[0]))
#     lb_fontsize = 5.0*40/len(labels)
    lb_fontsize = 5
    ax.set_xticklabels(labels, fontdict={'fontsize':lb_fontsize}, rotation=90), ax.set_yticklabels(labels, fontdict={'fontsize':lb_fontsize}, rotation=0)
#     ax.set_xticks([]), ax.set_yticks([])
    ax.set_frame_on(False)
    try:
        plt.tight_layout()
    except Exception as e:
        print e
    plt.savefig('hrc_zoomin_%i.%s'%(i,FMT), format=FMT)



In [7]:

    
from bionlp.util import func

clt_strs = '4330,4828,4832,4834,4836,4840,4843,6220,6222,6228,6232,6233,6234,6240,6244,6245,6246,6248,6252,6256,6257,6258,6260,6264,6268,6269,6270,6276,6292,6293,6294,6300,6304,6306,6312,6316,6318,6324,6328,6329,6330,6336;6381,6384,6386,6387,6388,6389,6391,6392,6393,6395,6398,6400,6401,6402,6403,6405,6406,6407,6409,6412,6414,6415,6416,6417,6419,6420,6421,6456,6462,6484,6490,6491,6526,6532,6540,6546;5366,5369,5381,5384,5396,5399,5411,5414,5426,5429,5441,5444,5456,5459,5501,5504,5531,5534,5546,5549,5561,5564,5576,5579;1207,1208,1211,1212,5368,5371,5374,5377,5383,5386,5389,5392,5443,5446,5449,5452,5458,5461,5464,5467,5503,5506,5509,5512,5548,5551,5554,5557,5563,5566,5569,5572,5578,5581,5584,5587,6089,7690,7691,7702,7703;6425,6426,6427,6428,6432,6434,6435,6438,6439,6440,6441,6442,6444,6445,6446,6447,6448,6449,6450,6466,6467,6468,6469,6470,6472,6473,6474,6475,6476,6477,6478,6495,6496,6497,6500,6501,6502,6503,6504,6505;1143,1147,1165,1171,1205,1206,1209,1210,1563,2808,2809,2813,2814,2815,2816,2817,2818,2819,2822,2824,2825,2826,4011,4015,4097,4233,4319,4327,4448,4481,5026,5061,5159,5334,5336,5339,5341,5342,5349,5351,5352,5354,5355,5356,5357,5390,5510,5585,5777,5824,5881,5924,5961,6091,6353,6358,6359,6373,6381,6384,6385,6386,6387,6388,6389,6390,6391,6392,6393,6395,6398,6400,6401,6402,6403,6404,6405,6406,6407,6408,6409,6412,6414,6415,6416,6417,6418,6419,6420,6421,6422,6423,6437,6451,6456,6457,6462,6465,6479,6482,6483,6484,6485,6488,6489,6490,6491,6492,6507,6521,6524,6526,6527,6528,6529,6530,6531,6532,6533,6535,6538,6540,6541,6542,6543,6544,6545,6546,6547,6740,6875,6876,6980,6981,7180,7181,7388,7692,7693,7704,7705,7833,7835,7836,7838,7839,7841,7867,7868,8037,8038,8042,8043,8047,8048,8055,8056,8067,8068;5472,5473,5475,5476,5477,5478,5479,5480,5482,5483,5484,5485,5487,5488,5490,5491,5492,5493,5494,5495,5497,5498,5499,5500,5517,5518,5520,5521,5522,5523,5524,5525,5527,5528,5529,5530;5366,5369,5376,5381,5384,5391,5396,5399,5406,5411,5414,5421,5426,5429,5436,5441,5444,5451,5456,5459,5466,5501,5504,5511,5531,5534,5541,5546,5549,5556,5561,5564,5571,5576,5579,5586;234,235,239,259,260,261,262,263,264,265,274,276,277,426,428,431,433,434,436,438,441,443,446,448,609,611,1383,1407,1408,1409,1410,1411,1412,1413,1414,1415,1416,1417,1422,1425,1427,1429,1432,1433,1435,1443,1447,1449,1452,1453,1455,1457,1458,1459,1460,1461,1462,1463,1464,1465,1466,1467,1468,1469,1470,1471,1472,1473,1474,1475,1476,3859,3860,3865,3866,3871,3872,3883,3884,3888,3894,3896,3906,3907,3908,3918,3920,4900,5032,5034,5037,5039,5042,5044,5047,5049,5052,5053,5054,5283,5284,5285,5286,5288,5289,5290,5291,5292,5293,5294,5361,5911,5912,5913,5914,6210,7503,7669,7885,7887,7897,7905,7906,7907,7908,7909,7910,7911,7920,7922,7925;476,1148,1154,1160,1166,1172,1215,1216,1219,1220,1495,1780,2804,2811,2820,2827,2828,2829,2830,2831,2834,2835,4016,4017,4018,4025,4203,4219,4220,4225,4226,4227,4304,4322,4326,4330,4383,4437,4480,4521,4597,4638,4828,4829,4830,4832,4834,4835,4836,4837,4840,4841,4842,4843,4934,5023,5062,5148,5333,5335,5337,5338,5340,5343,5344,5345,5347,5348,5785,5823,5829,5831,5832,5834,5923,6177,6184,6220,6221,6222,6228,6232,6233,6234,6240,6244,6245,6246,6248,6252,6256,6257,6258,6260,6264,6268,6269,6270,6276,6288,6292,6293,6294,6300,6304,6306,6312,6316,6318,6324,6328,6329,6330,6332,6336,6354,6355,6360,6361,6362,6365,6366,6368,6369,6370,6371,6372,6374,6375,6376,6377,6378,6379,6380,6394,6396,6397,6410,6424,6425,6426,6427,6428,6429,6430,6431,6432,6433,6434,6435,6436,6438,6439,6440,6441,6442,6443,6444,6445,6446,6447,6448,6449,6450,6452,6453,6455,6458,6459,6463,6464,6466,6467,6468,6469,6470,6471,6472,6473,6474,6475,6476,6477,6478,6481,6493,6494,6495,6496,6497,6499,6500,6501,6502,6503,6504,6505,6506,6508,6509,6512,6514,6515,6517,6519,6520,6523,6525,6537,6720,6873,6874,6877,7178,7179,7244,7391,7437,7461,7463,7467,7469,7694,7695,7698,7699,8036,8039,8040,8041,8044,8046,8049,8053,8057,8058,8061,8062,8065,8195,8196,8198,8199,8200,8201,8203,8204,8254;5472,5473,5475,5476,5477,5478,5479,5480,5482,5483,5484,5485,5487,5488,5490,5491,5492,5493,5494,5495,5497,5498,5499,5500,5517,5518,5520,5521,5522,5523,5524,5525,5527,5528,5529,5530;5366,5369,5376,5381,5384,5391,5396,5399,5406,5411,5414,5421,5426,5429,5436,5441,5444,5451,5456,5459,5466,5501,5504,5511,5531,5534,5541,5546,5549,5556,5561,5564,5571,5576,5579,5586;5366,5369,5381,5384,5396,5399,5411,5414,5426,5429,5441,5444,5456,5459,5501,5504,5531,5534,5546,5549,5561,5564,5576,5579;6425,6426,6427,6428,6432,6434,6435,6438,6439,6440,6441,6442,6444,6445,6446,6447,6448,6449,6450,6466,6467,6468,6469,6470,6472,6473,6474,6475,6476,6477,6478,6495,6496,6497,6500,6501,6502,6503,6504,6505;5376,5391,5406,5421,5436,5451,5466,5511,5541,5556,5571,5586;6381,6384,6386,6387,6388,6389,6391,6392,6393,6395,6398,6400,6401,6402,6403,6405,6406,6407,6409,6412,6414,6415,6416,6417,6419,6420,6421,6456,6462,6484,6490,6491,6526,6532,6540,6546;1207,1208,1211,1212,5368,5371,5374,5377,5383,5386,5389,5392,5443,5446,5449,5452,5458,5461,5464,5467,5503,5506,5509,5512,5548,5551,5554,5557,5563,5566,5569,5572,5578,5581,5584,5587,6089,7690,7691,7702,7703;476,1148,1154,1160,1166,1172,1215,1216,1219,1220,1495,1780,2804,2811,2820,2827,2828,2829,2830,2831,2834,2835,4016,4017,4018,4025,4203,4219,4220,4225,4226,4227,4304,4322,4326,4330,4383,4437,4480,4521,4597,4638,4828,4829,4830,4832,4834,4835,4836,4837,4840,4841,4842,4843,4934,5023,5062,5148,5333,5335,5337,5338,5340,5343,5344,5345,5347,5348,5785,5823,5829,5831,5832,5834,5923,6177,6184,6220,6221,6222,6228,6232,6233,6234,6240,6244,6245,6246,6248,6252,6256,6257,6258,6260,6264,6268,6269,6270,6276,6288,6292,6293,6294,6300,6304,6306,6312,6316,6318,6324,6328,6329,6330,6332,6336,6354,6355,6360,6361,6362,6365,6366,6368,6369,6370,6371,6372,6374,6375,6376,6377,6378,6379,6380,6394,6396,6397,6410,6424,6425,6426,6427,6428,6429,6430,6431,6432,6433,6434,6435,6436,6438,6439,6440,6441,6442,6443,6444,6445,6446,6447,6448,6449,6450,6452,6453,6455,6458,6459,6463,6464,6466,6467,6468,6469,6470,6471,6472,6473,6474,6475,6476,6477,6478,6481,6493,6494,6495,6496,6497,6499,6500,6501,6502,6503,6504,6505,6506,6508,6509,6512,6514,6515,6517,6519,6520,6523,6525,6537,6720,6873,6874,6877,7178,7179,7244,7391,7437,7461,7463,7467,7469,7694,7695,7698,7699,8036,8039,8040,8041,8044,8046,8049,8053,8057,8058,8061,8062,8065,8195,8196,8198,8199,8200,8201,8203,8204,8254;6353,6359,6423,6451,6457,6479,6485,6507,6521,6527,6528,6535,6541,6542,6543,6545;5383,5386,5392,5503,5506,5512,5548,5551,5557,5578,5581,5587,6089'
picked_clts = [map(int, clt.split(',')) for clt in clt_strs.split(';')]
idx_map = dict([(x, i) for i, x in enumerate(R['leaves'])])
lb_fontsize = 5
for i, clt in enumerate(picked_clts):
    clt = np.array(clt)
    ordered_clt = np.array(map(operator.itemgetter(1), func.sorted_tuples([(idx_map[x], x) for x in clt], key_idx=0)))
    labels = ['|'.join(x) for x in zip(sgn_df['subject'].loc[simmt.index[ordered_clt]], sgn_df['geo_id'].loc[simmt.index[ordered_clt]])]
    ax = plt.axes()
    ax.matshow(mat[ordered_clt[:,None], ordered_clt], aspect='auto', origin='upper', cmap=plt.cm.coolwarm, alpha=0.8)
#     plt.matshow(mat[ordered_clt[:,None], ordered_clt], aspect='auto', origin='upper', cmap=plt.cm.coolwarm, alpha=0.9)
    ax.tick_params(axis=u'both', which=u'both',length=0)
    ax.set_xticks(range(clt.shape[0])), ax.set_yticks(range(clt.shape[0]))
    ax.set_xticklabels(labels, fontdict={'fontsize':lb_fontsize}, rotation=90), ax.set_yticklabels(labels, fontdict={'fontsize':lb_fontsize}, rotation=0)
#     ax.set_xticks([]), ax.set_yticks([])
    plt.savefig('hrc_zoomin_%i.%s'%(i,FMT), format=FMT)



In [8]:

    
s = np.copy(simmt)
np.fill_diagonal(s, 0)



In [9]:

    
uniq_pair, table_dict = {}, {}
for x, y in zip(*np.where((s > 0.6) | (s < -0.6))):
    idx = ','.join(map(str, sorted([x,y])))
    if uniq_pair.has_key(idx): continue
    uniq_pair[idx] = simmt.iloc[x,y]
    gse_pair = sgn_df['geo_id'].loc[simmt.index[[x,y]]].tolist()
    if (gse_pair[0] == gse_pair[1]): continue
    subj_pair, subjtype_pair = sgn_df['subject'].loc[simmt.index[[x,y]]].tolist(), sgn_df['subject_type'].loc[simmt.index[[x,y]]].tolist()
    organism_pair, celltype_pair = sgn_df['organisms'].loc[simmt.index[[x,y]]].tolist(), sgn_df['cell_type'].loc[simmt.index[[x,y]]].tolist()
    print subj_pair, subjtype_pair, gse_pair, '[%i,%i,%.3f]'%(x,y,simmt.iloc[x,y])
    table = table_dict.setdefault('-'.join(subjtype_pair), {})
    if (subjtype_pair[0] == subjtype_pair[1]):
        idx_pair = subjtype_pair[0]+'1', subjtype_pair[1]+'2'
    else:
        idx_pair = subjtype_pair
    table.setdefault(idx_pair[0], []).append(subj_pair[0]), table.setdefault(idx_pair[1], []).append(subj_pair[1])
    table.setdefault(' '.join([idx_pair[0], 'GEO']), []).append(gse_pair[0]), table.setdefault(' '.join([idx_pair[1], 'GEO']), []).append(gse_pair[1])
    table.setdefault(' '.join([idx_pair[0], 'Organism']), []).append(organism_pair[0]), table.setdefault(' '.join([idx_pair[1], 'Organism']), []).append(organism_pair[1])
    table.setdefault(' '.join([idx_pair[0], 'Cell Type']), []).append(celltype_pair[0]), table.setdefault(' '.join([idx_pair[1], 'Cell Type']), []).append(celltype_pair[1])
    table.setdefault('Score', []).append(simmt.iloc[x,y])
for tbl_name, table in table_dict.iteritems():
    df = pd.DataFrame.from_dict(table)
    df.sort_values('Score', ascending=False, inplace=True)
    df.to_csv(tbl_name + '.csv', index=False)









    



/home/shankai/.conda/envs/skyan/lib/python2.7/site-packages/ipykernel_launcher.py:2: RuntimeWarning: invalid value encountered in greater
  
/home/shankai/.conda/envs/skyan/lib/python2.7/site-packages/ipykernel_launcher.py:2: RuntimeWarning: invalid value encountered in less
  






    



['type 2 diabetes mellitus', 'IL10'] ['Disease', 'Gene'] ['GSE54917', 'GSE2172'] [7,3926,1.000]
['obesity', 'Human immunodeficiency virus infectious disease'] ['Disease', 'Disease'] ['GSE54917', 'GSE2171'] [8,9,0.789]
['hepatitis C', 'SOD1'] ['Disease', 'Gene'] ['GSE20948', 'GSE4390'] [46,7843,1.000]
['polycystic ovary syndrome', 'peripartum cardiomyopathy'] ['Disease', 'Disease'] ['GSE48301', 'GSE42955'] [79,107,0.644]
['polycystic ovary syndrome', 'Down syndrome'] ['Disease', 'Disease'] ['GSE48301', 'GSE42956'] [79,109,0.716]
['peripartum cardiomyopathy', 'Down syndrome'] ['Disease', 'Disease'] ['GSE42955', 'GSE42956'] [107,109,0.754]
['dilated cardiomyopathy', 'Down syndrome'] ['Disease', 'Disease'] ['GSE42955', 'GSE42956'] [108,109,0.643]
['breast cancer', 'RB1'] ['Disease', 'Gene'] ['GSE26910', 'GSE6787'] [125,4052,1.000]
['cystic fibrosis', 'Retinal damage'] ['Disease', 'Disease'] ['GSE3100', 'GSE1001'] [169,173,0.647]
['Retinal damage', 'CFTR'] ['Disease', 'Gene'] ['GSE1001', 'GSE3100'] [173,4173,0.647]
['myocardial infarction', 'GATA1'] ['Disease', 'Gene'] ['GSE1957', 'GSE2527'] [195,7184,1.000]
['asthma', 'TERT'] ['Disease', 'Gene'] ['GSE43696', 'GSE361'] [203,7009,1.000]
['asthma', 'FOSL1'] ['Disease', 'Gene'] ['GSE43696', 'GSE43695'] [204,4336,1.000]
['asthma', 'Infantile neuronal ceroid lipofuscinosis'] ['Disease', 'Disease'] ['GSE43696', 'GSE6678'] [208,222,0.665]
['asthma', 'Wilson disease'] ['Disease', 'Disease'] ['GSE43696', 'GSE5348'] [209,223,0.691]
['Infantile neuronal ceroid lipofuscinosis', 'Schizophrenia'] ['Disease', 'Disease'] ['GSE6678', 'GSE12649'] [222,224,0.725]
["Huntington's disease", 'ATP7B'] ['Disease', 'Gene'] ['GSE3248', 'GSE5348'] [228,4399,1.000]
["Huntington's disease", 'RPE65'] ['Disease', 'Gene'] ['GSE3248', 'GSE3249'] [230,4408,1.000]
['chronic obstructive pulmonary disease', 'HTT'] ['Disease', 'Gene'] ['GSE3320', 'GSE3248'] [275,7921,1.000]
['systemic lupus erythematosus', 'HTT'] ['Disease', 'Gene'] ['GSE61635', 'GSE3248'] [276,7920,1.000]
['intellectual disability', 'HTT'] ['Disease', 'Gene'] ['GSE6575', 'GSE3248'] [277,7922,1.000]
['intellectual disability', 'HTT'] ['Disease', 'Gene'] ['GSE6575', 'GSE3248'] [278,7924,1.000]
['intellectual disability', 'HTT'] ['Disease', 'Gene'] ['GSE6575', 'GSE3248'] [279,7919,1.000]
['gastroesophageal reflux disease', 'CFTR'] ['Disease', 'Gene'] ['GSE2144', 'GSE765'] [302,4462,1.000]
['autism spectrum disorder', 'colorectal cancer'] ['Disease', 'Disease'] ['GSE28521', 'GSE32323'] [313,316,0.638]
['systemic lupus erythematosus', 'NASH'] ['Disease', 'Disease'] ['GSE36700', 'GSE24807'] [317,318,0.674]
['autoimmune thrombocytopenic purpura', 'Pompe disease, infantile-onset form'] ['Disease', 'Disease'] ['GSE574', 'GSE38680'] [341,342,0.711]
['acute myeloid leukemia', 'HTT'] ['Disease', 'Gene'] ['GSE9476', 'GSE3583'] [348,4649,1.000]
["Huntington's disease", 'MELAS syndrome'] ['Disease', 'Disease'] ['GSE24250', 'GSE1462'] [359,361,0.801]
['appendicitis', 'Neurogenic Muscular Atrophy'] ['Disease', 'Disease'] ['GSE9579', 'GSE2566'] [362,363,0.940]
['breast cancer', 'CDH11'] ['Disease', 'Gene'] ['GSE9574', 'GSE14943'] [365,4675,1.000]
['pancreatic ductal adenocarcinoma', 'NOS3'] ['Disease', 'Gene'] ['GSE61412', 'GSE1988'] [409,6994,1.000]
['Hemorrhagic shock', 'INSR'] ['Disease', 'Gene'] ['GSE1034', 'GSE36297'] [416,4978,1.000]
['neurofibromatosis', 'Atorvastatin'] ['Disease', 'Drug'] ['GSE1482', 'GSE11393'] [421,1826,0.733]
['neurofibromatosis', 'EHMT2'] ['Disease', 'Gene'] ['GSE1482', 'GSE34925'] [425,7679,1.000]
['chronic obstructive pulmonary disease', 'NF1'] ['Disease', 'Gene'] ['GSE3212', 'GSE1482'] [444,5043,1.000]
['type 2 diabetes mellitus', 'NF1'] ['Disease', 'Gene'] ['GSE3068', 'GSE1482'] [445,5046,1.000]
['skin squamous cell carcinoma', 'NF1'] ['Disease', 'Gene'] ['GSE45164', 'GSE1482'] [446,5039,1.000]
['ductal carcinoma in situ', 'NF1'] ['Disease', 'Gene'] ['GSE21422', 'GSE1482'] [447,5040,1.000]
['invasive ductal carcinoma', 'NF1'] ['Disease', 'Gene'] ['GSE21422', 'GSE1482'] [448,5037,1.000]
['psoriasis', 'NF1'] ['Disease', 'Gene'] ['GSE32407', 'GSE1482'] [449,5038,1.000]
['breast adenocarcinoma', 'NF1'] ['Disease', 'Gene'] ['GSE61304', 'GSE1482'] [450,5041,1.000]
['endogenous depression', 'ACVRL1'] ['Disease', 'Gene'] ['GSE26025', 'GSE3621'] [463,5105,1.000]
['allergic asthma', 'HTT'] ['Disease', 'Gene'] ['GSE3004', 'GSE3621'] [464,5104,1.000]
['pancreatic ductal adenocarcinoma', 'ACVRL1'] ['Disease', 'Gene'] ['GSE53659', 'GSE3621'] [465,5107,1.000]
['leukemia', 'ACVRL1'] ['Disease', 'Gene'] ['GSE2399', 'GSE3621'] [466,5106,1.000]
['idiopathic pulmonary fibrosis', 'FH'] ['Disease', 'Gene'] ['GSE24206', 'GSE2724'] [500,5601,1.000]
['Human immunodeficiency virus infectious disease', 'GATA1'] ['Disease', 'Gene'] ['GSE6740', 'GSE2433'] [522,5795,0.725]
['ulcerative colitis', 'Imatinib'] ['Disease', 'Drug'] ['GSE11223', 'GSE1922'] [550,3417,1.000]
['ulcerative colitis', 'LAMA2'] ['Disease', 'Gene'] ['GSE11223', 'GSE3252'] [552,6790,1.000]
['acute myocardial infarction', 'multiple myeloma'] ['Disease', 'Disease'] ['GSE775', 'GSE6691'] [606,630,0.603]
['APECED - Autoimmune polyendocrinopathy-candidiasis-ectodermal dystrophy', 'Teratospermia'] ['Disease', 'Disease'] ['GSE85', 'GSE6872'] [646,647,1.000]
['APECED - Autoimmune polyendocrinopathy-candidiasis-ectodermal dystrophy', 'Rett syndrome'] ['Disease', 'Disease'] ['GSE85', 'GSE6955'] [646,648,1.000]
['APECED - Autoimmune polyendocrinopathy-candidiasis-ectodermal dystrophy', 'Infertility due to azoospermia'] ['Disease', 'Disease'] ['GSE85', 'GSE3676'] [646,649,1.000]
['Teratospermia', 'Rett syndrome'] ['Disease', 'Disease'] ['GSE6872', 'GSE6955'] [647,648,1.000]
['Teratospermia', 'Infertility due to azoospermia'] ['Disease', 'Disease'] ['GSE6872', 'GSE3676'] [647,649,1.000]
['Rett syndrome', 'Infertility due to azoospermia'] ['Disease', 'Disease'] ['GSE6955', 'GSE3676'] [648,649,1.000]
['allergic contact dermatitis', 'AIRE'] ['Disease', 'Gene'] ['GSE6281', 'GSE85'] [659,5942,1.000]
['allergic contact dermatitis', 'MECP2'] ['Disease', 'Gene'] ['GSE6281', 'GSE6955'] [661,7938,1.000]
['allergic contact dermatitis', 'CADM1'] ['Disease', 'Gene'] ['GSE6281', 'GSE3676'] [662,5958,1.000]
['papillary thyroid carcinoma', 'ulcerative colitis'] ['Disease', 'Disease'] ['GSE3678', 'GSE1710'] [674,678,0.628]
['ulcerative colitis', 'macular degeneration'] ['Disease', 'Disease'] ['GSE1710', 'GSE1719'] [678,682,0.605]
['macular degeneration', 'cerebral palsy'] ['Disease', 'Disease'] ['GSE1719', 'GSE11686'] [682,686,0.617]
['Duchenne muscular dystrophy', 'CSTB'] ['Disease', 'Gene'] ['GSE1472', 'GSE47516'] [703,4045,0.614]
['Duchenne muscular dystrophy', 'CSTB'] ['Disease', 'Gene'] ['GSE1472', 'GSE47516'] [703,4048,1.000]
['Heart Injury', 'CSTB'] ['Disease', 'Gene'] ['GSE4710', 'GSE47516'] [705,4047,0.658]
['Heart Injury', 'CSTB'] ['Disease', 'Gene'] ['GSE4710', 'GSE47516'] [705,4049,1.000]
['hypertension', 'CSTB'] ['Disease', 'Gene'] ['GSE1674', 'GSE47516'] [706,4042,1.000]
['type 2 diabetes mellitus', 'CSTB'] ['Disease', 'Gene'] ['GSE2470', 'GSE47516'] [708,4041,0.873]
['type 2 diabetes mellitus', 'CSTB'] ['Disease', 'Gene'] ['GSE2470', 'GSE47516'] [708,4043,1.000]
['type 2 diabetes mellitus', 'CSTB'] ['Disease', 'Gene'] ['GSE2470', 'GSE47516'] [708,4044,0.725]
['type 2 diabetes mellitus', 'CSTB'] ['Disease', 'Gene'] ['GSE2470', 'GSE47516'] [708,4046,0.736]
['Setleis syndrome', 'DMD'] ['Disease', 'Gene'] ['GSE16524', 'GSE1472'] [714,6123,1.000]
['Dehydration', 'DMD'] ['Disease', 'Gene'] ['GSE4130', 'GSE1472'] [715,6124,1.000]
['Dehydration', 'DMD'] ['Disease', 'Gene'] ['GSE4130', 'GSE1472'] [716,6125,1.000]
['HIV encephalitis', 'DMD'] ['Disease', 'Gene'] ['GSE3489', 'GSE1472'] [717,6126,1.000]
['chronic granulomatous disease', 'TWIST2'] ['Disease', 'Gene'] ['GSE935', 'GSE16524'] [728,6352,1.000]
['juvenile rheumatoid arthritis', 'melanoma in situ'] ['Disease', 'Disease'] ['GSE1402', 'GSE4587'] [730,1178,1.000]
['actinic keratosis', 'thymic carcinoma'] ['Disease', 'Disease'] ['GSE2503', 'GSE2501'] [739,740,0.680]
['actinic keratosis', 'thymic carcinoma'] ['Disease', 'Disease'] ['GSE2503', 'GSE2501'] [739,741,0.701]
['actinic keratosis', 'TTN'] ['Disease', 'Gene'] ['GSE2503', 'GSE42806'] [739,6621,0.680]
['thymic carcinoma', 'diabetic retinopathy'] ['Disease', 'Disease'] ['GSE2501', 'GSE12610'] [740,742,0.709]
['thymic carcinoma', 'TTN'] ['Disease', 'Gene'] ['GSE2501', 'GSE42806'] [740,6621,1.000]
['thymic carcinoma', 'diabetic retinopathy'] ['Disease', 'Disease'] ['GSE2501', 'GSE12610'] [741,742,0.714]
['diabetic retinopathy', 'TTN'] ['Disease', 'Gene'] ['GSE12610', 'GSE42806'] [742,6621,0.709]
['Overexertion', 'DYSF'] ['Disease', 'Gene'] ['GSE3606', 'GSE2507'] [748,6637,1.000]
['Neurological pain disorder', 'DYSF'] ['Disease', 'Gene'] ['GSE15041', 'GSE2507'] [749,6636,1.000]
["Sjogren's syndrome", 'DYSF'] ['Disease', 'Gene'] ['GSE23117', 'GSE2507'] [750,6635,1.000]
["Sjogren's syndrome", 'DYSF'] ['Disease', 'Gene'] ['GSE23117', 'GSE2507'] [751,6634,1.000]
['myotonic dystrophy type 1', 'NF1'] ['Disease', 'Gene'] ['GSE7179', 'GSE29343'] [760,5240,1.000]
['Hypertrophy, Left Ventricular', 'Emery-Dreifuss muscular dystrophy'] ['Disease', 'Disease'] ['GSE2116', 'GSE8000'] [761,762,0.812]
['Emery-Dreifuss muscular dystrophy', 'PMP22'] ['Disease', 'Gene'] ['GSE8000', 'GSE1947'] [763,5662,0.658]
['endometrial cancer', 'LMNA'] ['Disease', 'Gene'] ['GSE17025', 'GSE8000'] [779,5883,1.000]
['endometrial cancer', 'LMNA'] ['Disease', 'Gene'] ['GSE17025', 'GSE8000'] [780,5882,1.000]
['Lung transplant rejection', 'WFS1'] ['Disease', 'Gene'] ['GSE3418', 'GSE15293'] [782,6692,1.000]
['severe combined immunodeficiency', 'WFS1'] ['Disease', 'Gene'] ['GSE3414', 'GSE15293'] [783,6691,0.770]
['severe combined immunodeficiency', 'WFS1'] ['Disease', 'Gene'] ['GSE3414', 'GSE15293'] [783,6693,1.000]
['severe combined immunodeficiency', 'WFS1'] ['Disease', 'Gene'] ['GSE3414', 'GSE15293'] [783,6699,0.784]
['cellular phase chronic idiopathic myelofibrosis', 'WFS1'] ['Disease', 'Gene'] ['GSE3410', 'GSE15293'] [784,6694,0.813]
['cellular phase chronic idiopathic myelofibrosis', 'WFS1'] ['Disease', 'Gene'] ['GSE3410', 'GSE15293'] [784,6695,1.000]
['cellular phase chronic idiopathic myelofibrosis', 'WFS1'] ['Disease', 'Gene'] ['GSE3410', 'GSE15293'] [784,6698,0.833]
['polycystic ovary syndrome', 'WFS1'] ['Disease', 'Gene'] ['GSE34526', 'GSE15293'] [785,6696,1.000]
['type 2 diabetes mellitus', 'GFAP'] ['Disease', 'Gene'] ['GSE2899', 'GSE977'] [963,5860,0.607]
['type 2 diabetes mellitus', 'APC'] ['Disease', 'Gene'] ['GSE2899', 'GSE422'] [965,6783,1.000]
['type 2 diabetes mellitus', 'APC'] ['Disease', 'Gene'] ['GSE2899', 'GSE422'] [965,6785,0.615]
['monoclonal gammopathy of uncertain significance', 'APC'] ['Disease', 'Gene'] ['GSE47552', 'GSE422'] [966,6784,1.000]
['monoclonal gammopathy of uncertain significance', 'APC'] ['Disease', 'Gene'] ['GSE47552', 'GSE422'] [966,6785,0.705]
['Osteoarthritis', 'CFTR'] ['Disease', 'Gene'] ['GSE16464', 'GSE769'] [973,4479,1.000]
['anemia', 'hypertension'] ['Disease', 'Disease'] ['GSE4619', 'GSE2739'] [987,993,0.874]
['anemia', 'hypertension'] ['Disease', 'Disease'] ['GSE4619', 'GSE2739'] [988,993,0.781]
['gastrointestinal stromal tumor', 'hepatocellular carcinoma'] ['Disease', 'Disease'] ['GSE15966', 'GSE4612'] [991,992,0.842]
['gastrointestinal stromal tumor', 'breast cancer'] ['Disease', 'Disease'] ['GSE15966', 'GSE1379'] [991,995,0.742]
['hepatocellular carcinoma', 'breast cancer'] ['Disease', 'Disease'] ['GSE4612', 'GSE1379'] [992,995,0.799]
['cocaine dependence', 'ABCB4'] ['Disease', 'Gene'] ['GSE3016', 'GSE4612'] [1009,6930,0.658]
['cocaine dependence', 'ABCB4'] ['Disease', 'Gene'] ['GSE3016', 'GSE4612'] [1009,6932,1.000]
['cocaine dependence', 'ABCB4'] ['Disease', 'Gene'] ['GSE3016', 'GSE4612'] [1009,6935,0.669]
['cerebral infarction', 'LMNA'] ['Disease', 'Gene'] ['GSE63', 'GSE32609'] [1016,6020,1.000]
['colitis', 'CFTR'] ['Disease', 'Gene'] ['GSE34874', 'GSE15568'] [1018,6984,1.000]
['Ischemic stroke', 'Lung transplant rejection'] ['Disease', 'Disease'] ['GSE22255', 'GSE2018'] [1030,1031,0.755]
['endometriosis', 'Decitabine'] ['Disease', 'Drug'] ['GSE6364', 'GSE29077'] [1045,2668,1.000]
['type 2 diabetes mellitus', 'liver cirrhosis'] ['Disease', 'Disease'] ['GSE642', 'GSE1843'] [1054,1056,0.661]
['type 2 diabetes mellitus', "Barrett's esophagus"] ['Disease', 'Disease'] ['GSE642', 'GSE13083'] [1054,1066,0.702]
['Familial hypophosphataemic rickets', 'primary open angle glaucoma'] ['Disease', 'Disease'] ['GSE868', 'GSE4316'] [1057,1060,0.643]
['bipolar disorder', 'Duchenne muscular dystrophy'] ['Disease', 'Disease'] ['GSE5389', 'GSE466'] [1063,1067,0.793]
['bipolar disorder', 'Duchenne muscular dystrophy'] ['Disease', 'Disease'] ['GSE5389', 'GSE466'] [1064,1067,0.699]
['anaplastic thyroid carcinoma', 'NFE2L2'] ['Disease', 'Gene'] ['GSE65144', 'GSE867'] [1070,7114,0.864]
['anaplastic thyroid carcinoma', 'ZNRF2'] ['Disease', 'Gene'] ['GSE65144', 'GSE867'] [1070,7116,1.000]
['anaplastic thyroid carcinoma', 'NFE2L2'] ['Disease', 'Gene'] ['GSE65144', 'GSE867'] [1070,7118,0.814]
['anaplastic thyroid carcinoma', 'NFE2L2'] ['Disease', 'Gene'] ['GSE65144', 'GSE867'] [1070,7120,0.888]
['Urothelial carcinoma in situ', 'CLCN5'] ['Disease', 'Gene'] ['GSE3167', 'GSE10162'] [1076,7177,1.000]
['Hypercholesteremia', 'TCOF1'] ['Disease', 'Gene'] ['GSE3889', 'GSE10167'] [1078,7183,1.000]
['bacterial infectious disease', 'Diclofenac'] ['Disease', 'Drug'] ['GSE6435', 'GSE28185'] [1079,1612,1.000]
['polycystic ovary syndrome', 'DMD'] ['Disease', 'Gene'] ['GSE10946', 'GSE466'] [1085,5797,1.000]
['autism spectrum disorder', 'MUT'] ['Disease', 'Gene'] ['GSE62632', 'GSE41044'] [1102,7475,1.000]
['large cell neuroendocrine carcinoma', 'bipolar disorder'] ['Disease', 'Disease'] ['GSE51852', 'GSE46449'] [1111,1117,0.600]
['pulmonary tuberculosis', 'bipolar disorder'] ['Disease', 'Disease'] ['GSE48027', 'GSE46449'] [1113,1114,0.781]
['psoriasis', 'SOD2'] ['Disease', 'Gene'] ['GSE27628', 'GSE2236'] [1125,7454,1.000]
['psoriasis', 'Chronic Lymphocytic Leukemia (Chronic B-lymphocytic leukemia)'] ['Disease', 'Disease'] ['GSE27628', 'GSE26725'] [1148,1166,0.720]
['psoriasis', 'Kidney disorder associated with type 2 diabetes mellitus'] ['Disease', 'Disease'] ['GSE27628', 'GSE2557'] [1149,1167,0.686]
['Polymyositis', 'Dehydration'] ['Disease', 'Disease'] ['GSE3112', 'GSE3110'] [1158,1162,0.657]
['Polymyositis', 'asthma'] ['Disease', 'Disease'] ['GSE3112', 'GSE16032'] [1158,1163,0.707]
['Dehydration', 'Simvastatin'] ['Disease', 'Drug'] ['GSE3110', 'GSE1871'] [1161,1903,1.000]
['Dehydration', 'asthma'] ['Disease', 'Disease'] ['GSE3110', 'GSE16032'] [1162,1163,0.619]
['chronic myeloid leukemia', 'EZH2'] ['Disease', 'Gene'] ['GSE48438', 'GSE39452'] [1183,7535,1.000]
["Huntington's disease", 'Imatinib'] ['Disease', 'Drug'] ['GSE9038', 'GSE1922'] [1188,3421,1.000]
["Huntington's disease", 'SOD1'] ['Disease', 'Gene'] ['GSE9038', 'GSE3343'] [1189,7629,1.000]
["Huntington's disease", 'SOD1'] ['Disease', 'Gene'] ['GSE9038', 'GSE3343'] [1190,7628,1.000]
["Huntington's disease", 'SOD1'] ['Disease', 'Gene'] ['GSE9038', 'GSE3343'] [1191,7627,1.000]
["Huntington's disease", 'SOD1'] ['Disease', 'Gene'] ['GSE9038', 'GSE3343'] [1192,7626,1.000]
["Huntington's disease", 'Bisphenol a'] ['Disease', 'Drug'] ['GSE9038', 'GSE17624'] [1200,2137,1.000]
["Huntington's disease", 'RP1'] ['Disease', 'Gene'] ['GSE9038', 'GSE128'] [1201,7649,1.000]
['hepatocellular carcinoma', 'diffuse large B-cell lymphoma'] ['Disease', 'Disease'] ['GSE57957', 'GSE6136'] [1205,1209,0.745]
['hepatocellular carcinoma', 'diffuse large B-cell lymphoma'] ['Disease', 'Disease'] ['GSE57957', 'GSE6136'] [1205,1210,0.721]
['hepatocellular carcinoma', 'HTT'] ['Disease', 'Gene'] ['GSE57957', 'GSE9038'] [1205,7692,0.745]
['hepatocellular carcinoma', 'HTT'] ['Disease', 'Gene'] ['GSE57957', 'GSE9038'] [1205,7693,0.721]
['hepatocellular carcinoma', 'HTT'] ['Disease', 'Gene'] ['GSE57957', 'GSE9038'] [1205,7704,1.000]
['diffuse large B-cell lymphoma', 'HTT'] ['Disease', 'Gene'] ['GSE6136', 'GSE9038'] [1206,7705,1.000]
['diffuse large B-cell lymphoma', 'morbid obesity'] ['Disease', 'Disease'] ['GSE6136', 'GSE48964'] [1207,1217,-0.619]
['diffuse large B-cell lymphoma', 'HTT'] ['Disease', 'Gene'] ['GSE6136', 'GSE9038'] [1207,7690,0.797]
['diffuse large B-cell lymphoma', 'HTT'] ['Disease', 'Gene'] ['GSE6136', 'GSE9038'] [1207,7691,0.883]
['diffuse large B-cell lymphoma', 'HTT'] ['Disease', 'Gene'] ['GSE6136', 'GSE9038'] [1207,7700,-0.619]
['diffuse large B-cell lymphoma', 'HTT'] ['Disease', 'Gene'] ['GSE6136', 'GSE9038'] [1207,7702,0.840]
['diffuse large B-cell lymphoma', 'HTT'] ['Disease', 'Gene'] ['GSE6136', 'GSE9038'] [1207,7703,1.000]
['diffuse large B-cell lymphoma', 'HTT'] ['Disease', 'Gene'] ['GSE6136', 'GSE9038'] [1208,7690,0.868]
['diffuse large B-cell lymphoma', 'HTT'] ['Disease', 'Gene'] ['GSE6136', 'GSE9038'] [1208,7691,0.793]
['diffuse large B-cell lymphoma', 'HTT'] ['Disease', 'Gene'] ['GSE6136', 'GSE9038'] [1208,7702,1.000]
['diffuse large B-cell lymphoma', 'HTT'] ['Disease', 'Gene'] ['GSE6136', 'GSE9038'] [1208,7703,0.840]
['diffuse large B-cell lymphoma', 'HTT'] ['Disease', 'Gene'] ['GSE6136', 'GSE9038'] [1209,7692,1.000]
['diffuse large B-cell lymphoma', 'HTT'] ['Disease', 'Gene'] ['GSE6136', 'GSE9038'] [1209,7693,0.957]
['diffuse large B-cell lymphoma', 'HTT'] ['Disease', 'Gene'] ['GSE6136', 'GSE9038'] [1209,7704,0.745]
['diffuse large B-cell lymphoma', 'HTT'] ['Disease', 'Gene'] ['GSE6136', 'GSE9038'] [1210,7692,0.957]
['diffuse large B-cell lymphoma', 'HTT'] ['Disease', 'Gene'] ['GSE6136', 'GSE9038'] [1210,7693,1.000]
['diffuse large B-cell lymphoma', 'HTT'] ['Disease', 'Gene'] ['GSE6136', 'GSE9038'] [1210,7704,0.721]
['diffuse large B-cell lymphoma', 'morbid obesity'] ['Disease', 'Disease'] ['GSE6136', 'GSE48964'] [1211,1217,-0.603]
['diffuse large B-cell lymphoma', 'HTT'] ['Disease', 'Gene'] ['GSE6136', 'GSE9038'] [1211,7690,0.847]
['diffuse large B-cell lymphoma', 'HTT'] ['Disease', 'Gene'] ['GSE6136', 'GSE9038'] [1211,7691,1.000]
['diffuse large B-cell lymphoma', 'HTT'] ['Disease', 'Gene'] ['GSE6136', 'GSE9038'] [1211,7700,-0.603]
['diffuse large B-cell lymphoma', 'HTT'] ['Disease', 'Gene'] ['GSE6136', 'GSE9038'] [1211,7702,0.793]
['diffuse large B-cell lymphoma', 'HTT'] ['Disease', 'Gene'] ['GSE6136', 'GSE9038'] [1211,7703,0.883]
['diffuse large B-cell lymphoma', 'HTT'] ['Disease', 'Gene'] ['GSE6136', 'GSE9038'] [1212,7690,1.000]
['diffuse large B-cell lymphoma', 'HTT'] ['Disease', 'Gene'] ['GSE6136', 'GSE9038'] [1212,7691,0.847]
['diffuse large B-cell lymphoma', 'HTT'] ['Disease', 'Gene'] ['GSE6136', 'GSE9038'] [1212,7702,0.868]
['diffuse large B-cell lymphoma', 'HTT'] ['Disease', 'Gene'] ['GSE6136', 'GSE9038'] [1212,7703,0.797]
['diffuse large B-cell lymphoma', 'pancreatic cancer'] ['Disease', 'Disease'] ['GSE6136', 'GSE18670'] [1213,1214,0.747]
['diffuse large B-cell lymphoma', 'morbid obesity'] ['Disease', 'Disease'] ['GSE6136', 'GSE48964'] [1213,1217,0.715]
['diffuse large B-cell lymphoma', 'papillary thyroid carcinoma'] ['Disease', 'Disease'] ['GSE6136', 'GSE3467'] [1213,1218,0.643]
['diffuse large B-cell lymphoma', 'HTT'] ['Disease', 'Gene'] ['GSE6136', 'GSE9038'] [1213,7696,1.000]
['diffuse large B-cell lymphoma', 'HTT'] ['Disease', 'Gene'] ['GSE6136', 'GSE9038'] [1213,7697,0.747]
['diffuse large B-cell lymphoma', 'HTT'] ['Disease', 'Gene'] ['GSE6136', 'GSE9038'] [1213,7700,0.715]
['diffuse large B-cell lymphoma', 'HTT'] ['Disease', 'Gene'] ['GSE6136', 'GSE9038'] [1213,7701,0.643]
['pancreatic cancer', 'morbid obesity'] ['Disease', 'Disease'] ['GSE18670', 'GSE48964'] [1214,1217,0.604]
['pancreatic cancer', 'papillary thyroid carcinoma'] ['Disease', 'Disease'] ['GSE18670', 'GSE3467'] [1214,1218,0.671]
['pancreatic cancer', 'HTT'] ['Disease', 'Gene'] ['GSE18670', 'GSE9038'] [1214,7696,0.747]
['pancreatic cancer', 'HTT'] ['Disease', 'Gene'] ['GSE18670', 'GSE9038'] [1214,7697,1.000]
['pancreatic cancer', 'HTT'] ['Disease', 'Gene'] ['GSE18670', 'GSE9038'] [1214,7700,0.604]
['pancreatic cancer', 'HTT'] ['Disease', 'Gene'] ['GSE18670', 'GSE9038'] [1214,7701,0.671]
['hepatocellular carcinoma', 'HTT'] ['Disease', 'Gene'] ['GSE2127', 'GSE9038'] [1215,7695,1.000]
['schizophrenia', 'colon cancer'] ['Disease', 'Disease'] ['GSE62105', 'GSE4107'] [1216,1220,0.603]
['schizophrenia', 'HTT'] ['Disease', 'Gene'] ['GSE62105', 'GSE9038'] [1216,7694,1.000]
['schizophrenia', 'HTT'] ['Disease', 'Gene'] ['GSE62105', 'GSE9038'] [1216,7698,0.603]
['morbid obesity', 'papillary thyroid carcinoma'] ['Disease', 'Disease'] ['GSE48964', 'GSE3467'] [1217,1218,0.785]
['morbid obesity', 'HTT'] ['Disease', 'Gene'] ['GSE48964', 'GSE9038'] [1217,7691,-0.603]
['morbid obesity', 'HTT'] ['Disease', 'Gene'] ['GSE48964', 'GSE9038'] [1217,7696,0.715]
['morbid obesity', 'HTT'] ['Disease', 'Gene'] ['GSE48964', 'GSE9038'] [1217,7697,0.604]
['morbid obesity', 'HTT'] ['Disease', 'Gene'] ['GSE48964', 'GSE9038'] [1217,7700,1.000]
['morbid obesity', 'HTT'] ['Disease', 'Gene'] ['GSE48964', 'GSE9038'] [1217,7701,0.785]
['morbid obesity', 'HTT'] ['Disease', 'Gene'] ['GSE48964', 'GSE9038'] [1217,7703,-0.619]
['papillary thyroid carcinoma', 'HTT'] ['Disease', 'Gene'] ['GSE3467', 'GSE9038'] [1218,7696,0.643]
['papillary thyroid carcinoma', 'HTT'] ['Disease', 'Gene'] ['GSE3467', 'GSE9038'] [1218,7697,0.671]
['papillary thyroid carcinoma', 'HTT'] ['Disease', 'Gene'] ['GSE3467', 'GSE9038'] [1218,7700,0.785]
['papillary thyroid carcinoma', 'HTT'] ['Disease', 'Gene'] ['GSE3467', 'GSE9038'] [1218,7701,1.000]
['myocardial infarction', 'HTT'] ['Disease', 'Gene'] ['GSE4105', 'GSE9038'] [1219,7699,1.000]
['colon cancer', 'HTT'] ['Disease', 'Gene'] ['GSE4107', 'GSE9038'] [1220,7694,0.603]
['colon cancer', 'HTT'] ['Disease', 'Gene'] ['GSE4107', 'GSE9038'] [1220,7698,1.000]
['arthritis', 'BRD2'] ['Disease', 'Gene'] ['GSE21521', 'GSE6136'] [1228,7760,1.000]
['fetal alcohol spectrum disorder', 'Rosiglitazone'] ['Disease', 'Drug'] ['GSE34305', 'GSE21329'] [1240,3034,1.000]
['adrenoleukodystrophy', 'Troglitazone'] ['Disease', 'Drug'] ['GSE34309', 'GSE21329'] [1242,3036,0.655]
['adrenoleukodystrophy', 'Lubiprostone'] ['Disease', 'Drug'] ['GSE34309', 'GSE18327'] [1243,3037,0.664]
["Alzheimer's disease", 'Ebola hemorrhagic fever'] ['Disease', 'Disease'] ['GSE36980', 'GSE31747'] [1281,1283,0.648]
['autism spectrum disorder', 'nonspecific interstitial pneumonia'] ['Disease', 'Disease'] ['GSE7329', 'GSE5774'] [1286,1298,0.634]
['autism spectrum disorder', 'epilepsy syndrome'] ['Disease', 'Disease'] ['GSE7329', 'GSE2880'] [1287,1299,0.639]
['autism spectrum disorder', 'Premature aging'] ['Disease', 'Disease'] ['GSE7329', 'GSE10123'] [1289,1301,0.619]
['fragile X syndrome', 'papillary thyroid carcinoma'] ['Disease', 'Disease'] ['GSE7329', 'GSE54958'] [1293,1295,0.660]
['epilepsy syndrome', 'Premature aging'] ['Disease', 'Disease'] ['GSE2880', 'GSE10123'] [1299,1301,0.622]
['melanoma', 'FMR1'] ['Disease', 'Gene'] ['GSE6887', 'GSE7329'] [1307,5595,1.000]
['melanoma', 'FMR1'] ['Disease', 'Gene'] ['GSE6887', 'GSE7329'] [1308,5595,0.655]
['melanoma', 'FMR1'] ['Disease', 'Gene'] ['GSE6887', 'GSE7329'] [1309,5595,0.783]
['melanoma', 'FMR1'] ['Disease', 'Gene'] ['GSE6887', 'GSE7329'] [1311,5595,0.679]
['melanoma', 'FMR1'] ['Disease', 'Gene'] ['GSE6887', 'GSE7329'] [1313,5595,0.633]
['melanoma', 'RS1'] ['Disease', 'Gene'] ['GSE6887', 'GSE5581'] [1317,4410,1.000]
['melanoma', 'Levetiracetam'] ['Disease', 'Drug'] ['GSE6887', 'GSE2880'] [1319,3092,0.888]
['melanoma', 'Lysophosphatidic acid'] ['Disease', 'Drug'] ['GSE6887', 'GSE26309'] [1319,3099,0.889]
['hepatitis C virus related hepatocellular carcinoma', 'ALDH5A1'] ['Disease', 'Gene'] ['GSE58208', 'GSE2866'] [1343,4662,1.000]
['hepatocellular carcinoma', 'ALDH5A1'] ['Disease', 'Gene'] ['GSE58208', 'GSE2866'] [1344,4663,1.000]
['hepatocellular carcinoma', 'ALDH5A1'] ['Disease', 'Gene'] ['GSE58208', 'GSE2866'] [1344,4664,0.789]
['pancreatic intraductal papillary-mucinous adenoma', 'ALDH5A1'] ['Disease', 'Gene'] ['GSE19650', 'GSE2866'] [1345,4665,1.000]
['pancreatic non-invasive intraductal papillary-mucinous carcinoma', 'ALDH5A1'] ['Disease', 'Gene'] ['GSE19650', 'GSE2866'] [1346,4666,1.000]
['pancreatic non-invasive intraductal papillary-mucinous carcinoma', 'ALDH5A1'] ['Disease', 'Gene'] ['GSE19650', 'GSE2866'] [1346,4668,0.688]
['pancreatic non-invasive intraductal papillary-mucinous carcinoma', 'ALDH5A1'] ['Disease', 'Gene'] ['GSE19650', 'GSE2866'] [1346,4670,0.787]
['pancreatic invasive intraductal papillary-mucinous carcinoma', 'ALDH5A1'] ['Disease', 'Gene'] ['GSE19650', 'GSE2866'] [1347,4667,1.000]
['autism spectrum disorder', 'ALDH5A1'] ['Disease', 'Gene'] ['GSE63524', 'GSE2866'] [1348,4669,1.000]
['schizophrenia', 'ALDH5A1'] ['Disease', 'Gene'] ['GSE17612', 'GSE2866'] [1349,4658,1.000]
['schizophrenia', 'ALDH5A1'] ['Disease', 'Gene'] ['GSE17612', 'GSE2866'] [1350,4659,1.000]
['schizophrenia', 'ALDH5A1'] ['Disease', 'Gene'] ['GSE17612', 'GSE2866'] [1351,4660,0.761]
['schizophrenia', 'ALDH5A1'] ['Disease', 'Gene'] ['GSE17612', 'GSE2866'] [1351,4661,1.000]
['schizophrenia', 'ALDH5A1'] ['Disease', 'Gene'] ['GSE17612', 'GSE2866'] [1351,4673,0.784]
['schizophrenia', 'Haloperidol'] ['Disease', 'Drug'] ['GSE17612', 'GSE6467'] [1352,3197,1.000]
['nemaline myopathy', 'dengue hemorrhagic fever'] ['Disease', 'Disease'] ['GSE3384', 'GSE51808'] [1408,1458,0.608]
['nemaline myopathy', 'hepatocellular carcinoma'] ['Disease', 'Disease'] ['GSE3384', 'GSE60502'] [1409,1469,0.731]
['nemaline myopathy', "Huntington's disease"] ['Disease', 'Disease'] ['GSE3384', 'GSE26001'] [1409,1473,0.660]
['nemaline myopathy', 'myotonic dystrophy type 1'] ['Disease', 'Disease'] ['GSE3384', 'GSE7177'] [1410,1470,0.746]
['nemaline myopathy', "Huntington's disease"] ['Disease', 'Disease'] ['GSE3384', 'GSE26001'] [1410,1474,0.721]
['nemaline myopathy', 'myotonic dystrophy type 1'] ['Disease', 'Disease'] ['GSE3384', 'GSE7177'] [1411,1471,0.631]
['nemaline myopathy', "Huntington's disease"] ['Disease', 'Disease'] ['GSE3384', 'GSE26001'] [1413,1473,0.716]
['nemaline myopathy', 'myotonic dystrophy type 1'] ['Disease', 'Disease'] ['GSE3384', 'GSE7177'] [1414,1470,0.698]
['nemaline myopathy', "Huntington's disease"] ['Disease', 'Disease'] ['GSE3384', 'GSE26001'] [1414,1474,0.755]
['nemaline myopathy', 'type 1 diabetes mellitus'] ['Disease', 'Disease'] ['GSE3384', 'GSE11'] [1416,1466,0.640]
['nemaline myopathy', 'dengue disease'] ['Disease', 'Disease'] ['GSE3384', 'GSE51808'] [1436,1456,0.881]
['dengue hemorrhagic fever', 'type 1 diabetes mellitus'] ['Disease', 'Disease'] ['GSE51808', 'GSE11'] [1458,1466,0.669]
['dengue hemorrhagic fever', 'childhood type dermatomyositis'] ['Disease', 'Disease'] ['GSE51808', 'GSE11971'] [1459,1463,0.760]
['dengue hemorrhagic fever', 'type 1 diabetes mellitus'] ['Disease', 'Disease'] ['GSE51808', 'GSE11'] [1460,1464,0.867]
['childhood type dermatomyositis', 'type 1 diabetes mellitus'] ['Disease', 'Disease'] ['GSE11971', 'GSE11'] [1462,1465,0.860]
['hepatocellular carcinoma', "Huntington's disease"] ['Disease', 'Disease'] ['GSE60502', 'GSE26001'] [1469,1473,0.758]
['myotonic dystrophy type 1', "Huntington's disease"] ['Disease', 'Disease'] ['GSE7177', 'GSE26001'] [1470,1474,0.848]
['type 1 diabetes mellitus', 'amyotrophic lateral sclerosis type 10'] ['Disease', 'Disease'] ['GSE10586', 'GSE18632'] [1477,1480,0.799]
['urticaria', 'Meningococcal infection'] ['Disease', 'Disease'] ['GSE57178', 'GSE3934'] [1478,1481,0.823]
['leukemia', "Huntington's disease"] ['Disease', 'Disease'] ['GSE44025', 'GSE5786'] [1479,1482,0.744]
['Nutritional deficiency, NEC', 'HTT'] ['Disease', 'Gene'] ['GSE1776', 'GSE26001'] [1494,8197,0.915]
['Nutritional deficiency, NEC', 'HTT'] ['Disease', 'Gene'] ['GSE1776', 'GSE26001'] [1494,8202,1.000]
['alcohol abuse', 'HTT'] ['Disease', 'Gene'] ['GSE12679', 'GSE26001'] [1495,8198,0.768]
['alcohol abuse', 'HTT'] ['Disease', 'Gene'] ['GSE12679', 'GSE26001'] [1495,8203,1.000]
['alcohol abuse', 'SH2B3'] ['Disease', 'Gene'] ['GSE12679', 'GSE44025'] [1500,8243,1.000]
['alcohol abuse', 'TARDBP'] ['Disease', 'Gene'] ['GSE12679', 'GSE18632'] [1501,8244,1.000]
['alcohol abuse', 'PPARGC1A'] ['Disease', 'Gene'] ['GSE12679', 'GSE5786'] [1503,5890,1.000]
['alcohol abuse', 'PTEN'] ['Disease', 'Gene'] ['GSE12679', 'GSE6078'] [1505,8252,1.000]
['alcohol abuse', 'SOD1'] ['Disease', 'Gene'] ['GSE12679', 'GSE10953'] [1510,6031,1.000]
['alcohol abuse', 'SOD1'] ['Disease', 'Gene'] ['GSE12679', 'GSE10953'] [1511,6032,1.000]
['alcohol abuse', 'SOD1'] ['Disease', 'Gene'] ['GSE12679', 'GSE10953'] [1512,6029,1.000]
['bipolar disorder', 'SOD1'] ['Disease', 'Gene'] ['GSE12679', 'GSE10953'] [1513,6030,1.000]
['alcohol abuse', 'IGHMBP2'] ['Disease', 'Gene'] ['GSE12679', 'GSE3075'] [1514,7057,1.000]
['alcohol abuse', 'chronic myeloid leukemia'] ['Disease', 'Disease'] ['GSE12679', 'GSE5550'] [1526,1543,0.672]
['schizophrenia', 'chronic myeloid leukemia'] ['Disease', 'Disease'] ['GSE12679', 'GSE5550'] [1527,1543,0.901]
['bipolar disorder', 'Nicotine addiction'] ['Disease', 'Disease'] ['GSE12679', 'GSE11208'] [1528,1544,0.776]
['alcohol abuse', 'Nicotine addiction'] ['Disease', 'Disease'] ['GSE12679', 'GSE11208'] [1530,1544,0.713]
['alcohol abuse', 'Nicotine addiction'] ['Disease', 'Disease'] ['GSE12679', 'GSE11208'] [1532,1544,0.625]
['alcohol abuse', 'chronic myeloid leukemia'] ['Disease', 'Disease'] ['GSE12679', 'GSE5550'] [1542,1543,0.681]
['Insulin regular', 'Doxorubicin'] ['Drug', 'Drug'] ['GSE39752', 'GSE58074'] [1631,1634,0.705]
['Insulin regular', 'Doxorubicin'] ['Drug', 'Drug'] ['GSE39752', 'GSE58074'] [1632,1634,0.711]
['Insulin regular', 'Doxorubicin'] ['Drug', 'Drug'] ['GSE39752', 'GSE58074'] [1633,1634,0.930]
['Tretinoin', '4-hydroxytamoxifen'] ['Drug', 'Drug'] ['GSE23702', 'GSE26298'] [1765,1772,0.630]
['Tretinoin', '4-hydroxytamoxifen'] ['Drug', 'Drug'] ['GSE23702', 'GSE26298'] [1767,1772,0.639]
['Tretinoin', '4-hydroxytamoxifen'] ['Drug', 'Drug'] ['GSE23702', 'GSE26298'] [1768,1772,0.837]
['Tretinoin', '4-hydroxytamoxifen'] ['Drug', 'Drug'] ['GSE23702', 'GSE26298'] [1769,1772,0.670]
['Tretinoin', '4-hydroxytamoxifen'] ['Drug', 'Drug'] ['GSE23702', 'GSE26298'] [1770,1772,0.600]
['Tretinoin', '4-hydroxytamoxifen'] ['Drug', 'Drug'] ['GSE23702', 'GSE26298'] [1771,1772,0.682]
['4-hydroxytamoxifen', 'TGM2'] ['Drug', 'Gene'] ['GSE26298', 'GSE23702'] [1772,4944,-1.000]
['4-hydroxytamoxifen', 'TGM2'] ['Drug', 'Gene'] ['GSE26298', 'GSE23702'] [1772,4947,-0.600]
['4-hydroxytamoxifen', 'TGM2'] ['Drug', 'Gene'] ['GSE26298', 'GSE23702'] [1772,4949,0.639]
['4-hydroxytamoxifen', 'TGM2'] ['Drug', 'Gene'] ['GSE26298', 'GSE23702'] [1772,4951,0.630]
['Vx', 'Pioglitazone'] ['Drug', 'Drug'] ['GSE33606', 'GSE8157'] [1803,1804,0.628]
['Pimecrolimus', 'FOSL1'] ['Drug', 'Gene'] ['GSE32473', 'GSE43695'] [1814,4337,1.000]
['Vanadium pentoxide', 'LEP'] ['Drug', 'Gene'] ['GSE5339', 'GSE3293'] [1915,6633,-1.000]
['Vanadium pentoxide', '1-benzylpiperazine'] ['Drug', 'Drug'] ['GSE5339', 'GSE68785'] [1935,1940,0.609]
['Methamphetamine', 'Sorafenib'] ['Drug', 'Drug'] ['GSE30305', 'GSE39192'] [1979,2024,0.634]
['Methamphetamine', 'Sorafenib'] ['Drug', 'Drug'] ['GSE30305', 'GSE39192'] [2006,2024,0.647]
['Epz004777', 'Imatinib'] ['Drug', 'Drug'] ['GSE29828', 'GSE19567'] [2341,2343,0.870]
['Etanercept', 'DOT1L'] ['Drug', 'Gene'] ['GSE36177', 'GSE29828'] [2345,7615,1.000]
['Etanercept', 'Dexamethasone'] ['Drug', 'Drug'] ['GSE36177', 'GSE34313'] [2348,2351,0.621]
['Estradiol', 'Formaldehyde'] ['Drug', 'Drug'] ['GSE1153', 'GSE7002'] [2682,2686,0.613]
['Perfluorooctanoic acid', 'Fluoxetine'] ['Drug', 'Drug'] ['GSE13044', 'GSE6476'] [2814,2818,0.678]
['Perfluorooctanoic acid', 'Decitabine'] ['Drug', 'Drug'] ['GSE13044', 'GSE9118'] [2816,2817,0.797]
['Perfluorooctanoic acid', 'Mehp'] ['Drug', 'Drug'] ['GSE13044', 'GSE4514'] [2816,2828,-0.613]
['Perfluorooctanoic acid', 'Mehp'] ['Drug', 'Drug'] ['GSE13044', 'GSE4514'] [2816,2835,-0.640]
['Decitabine', 'Mehp'] ['Drug', 'Drug'] ['GSE9118', 'GSE4514'] [2817,2828,-0.626]
['Decitabine', 'Mehp'] ['Drug', 'Drug'] ['GSE9118', 'GSE4514'] [2817,2835,-0.652]
['Celecoxib', 'Mehp'] ['Drug', 'Drug'] ['GSE11237', 'GSE4514'] [2822,2826,0.604]
['Mehp', 'PTGS2'] ['Drug', 'Gene'] ['GSE4514', 'GSE11237'] [2838,4418,1.000]
['Resveratrol', 'SRF'] ['Drug', 'Gene'] ['GSE62194', 'GSE22606'] [2880,5610,1.000]
['Resveratrol', 'SRF'] ['Drug', 'Gene'] ['GSE62194', 'GSE22606'] [2881,5609,-1.000]
['Resveratrol', 'Sodium arsenite'] ['Drug', 'Drug'] ['GSE62194', 'GSE11056'] [2883,2913,0.649]
['Resveratrol', 'Sodium arsenite'] ['Drug', 'Drug'] ['GSE62194', 'GSE11056'] [2895,2913,0.625]
['Estradiol', 'Lipopolysaccharide'] ['Drug', 'Drug'] ['GSE11506', 'GSE367'] [2903,2905,0.683]
['Estradiol', 'Lipopolysaccharide'] ['Drug', 'Drug'] ['GSE11506', 'GSE367'] [2903,2906,0.631]
['Plx4032', 'FGFR3'] ['Drug', 'Gene'] ['GSE24862', 'GSE41035'] [2962,6041,0.664]
['Plx4032', 'FGFR3'] ['Drug', 'Gene'] ['GSE24862', 'GSE41035'] [2962,6053,1.000]
['Plx4032', 'FGFR3'] ['Drug', 'Gene'] ['GSE24862', 'GSE41035'] [2963,6055,0.830]
['Plx4032', 'FGFR3'] ['Drug', 'Gene'] ['GSE24862', 'GSE41035'] [2963,6056,1.000]
['Plx4032', 'FGFR3'] ['Drug', 'Gene'] ['GSE24862', 'GSE41035'] [2963,6058,0.607]
['Plx4032', 'FGFR3'] ['Drug', 'Gene'] ['GSE24862', 'GSE41035'] [2964,6054,0.867]
['Plx4032', 'FGFR3'] ['Drug', 'Gene'] ['GSE24862', 'GSE41035'] [2964,6057,1.000]
['Acrylamide', 'MSGN1'] ['Drug', 'Gene'] ['GSE29004', 'GSE29848'] [3010,3993,1.000]
['Acrylamide', 'MSGN1'] ['Drug', 'Gene'] ['GSE29004', 'GSE29848'] [3011,3995,1.000]
['Acrylamide', 'MSGN1'] ['Drug', 'Gene'] ['GSE29004', 'GSE29848'] [3012,3994,1.000]
['Cigarette smoke', 'MSGN1'] ['Drug', 'Gene'] ['GSE8823', 'GSE29848'] [3013,3996,1.000]
['Casiigly', 'MSGN1'] ['Drug', 'Gene'] ['GSE41827', 'GSE29848'] [3014,3998,1.000]
['Caerulein', 'MSGN1'] ['Drug', 'Gene'] ['GSE3644', 'GSE29848'] [3015,3997,1.000]
['Caerulein', 'MSGN1'] ['Drug', 'Gene'] ['GSE3644', 'GSE29848'] [3016,3999,1.000]
['Caerulein', 'MSGN1'] ['Drug', 'Gene'] ['GSE3644', 'GSE29848'] [3017,4001,1.000]
['Caerulein', 'MSGN1'] ['Drug', 'Gene'] ['GSE3644', 'GSE29848'] [3018,4000,1.000]
['Rosiglitazone', 'ERBB3'] ['Drug', 'Gene'] ['GSE21329', 'GSE22288'] [3027,5718,1.000]
['Laccaic acid', 'Genistein'] ['Drug', 'Drug'] ['GSE45804', 'GSE2889'] [3063,3067,0.687]
['Estradiol', 'Levetiracetam'] ['Drug', 'Drug'] ['GSE2889', 'GSE2880'] [3064,3069,0.644]
['Genistein', 'Levetiracetam'] ['Drug', 'Drug'] ['GSE2889', 'GSE2880'] [3065,3069,0.683]
['Genistein', 'Levetiracetam'] ['Drug', 'Drug'] ['GSE2889', 'GSE2880'] [3066,3070,0.688]
['Genistein', 'Phenytoin'] ['Drug', 'Drug'] ['GSE2889', 'GSE2880'] [3067,3075,0.680]
['Estradiol', 'Levetiracetam'] ['Drug', 'Drug'] ['GSE2889', 'GSE2880'] [3068,3069,0.830]
['Estradiol', 'Levetiracetam'] ['Drug', 'Drug'] ['GSE2889', 'GSE2880'] [3068,3076,0.658]
['Estradiol', 'Phenytoin'] ['Drug', 'Drug'] ['GSE2889', 'GSE2880'] [3068,3077,0.608]
['Levetiracetam', 'DNMT1'] ['Drug', 'Gene'] ['GSE2880', 'GSE45804'] [3082,5927,1.000]
['Levetiracetam', 'Lysophosphatidic acid'] ['Drug', 'Drug'] ['GSE2880', 'GSE26309'] [3090,3097,0.795]
['Levetiracetam', 'Lysophosphatidic acid'] ['Drug', 'Drug'] ['GSE2880', 'GSE26309'] [3091,3098,0.857]
['Levetiracetam', 'Lysophosphatidic acid'] ['Drug', 'Drug'] ['GSE2880', 'GSE26309'] [3092,3099,0.944]
['Phenytoin', 'Lysophosphatidic acid'] ['Drug', 'Drug'] ['GSE2880', 'GSE26309'] [3093,3100,0.725]
['Levetiracetam', 'Lysophosphatidic acid'] ['Drug', 'Drug'] ['GSE2880', 'GSE26309'] [3094,3101,0.640]
['Lysophosphatidic acid', 'Carboplatin'] ['Drug', 'Drug'] ['GSE26309', 'GSE49577'] [3103,3108,0.829]
['Carboplatin', 'NET1'] ['Drug', 'Gene'] ['GSE49577', 'GSE26309'] [3117,6949,1.000]
['Carboplatin', 'NET1'] ['Drug', 'Gene'] ['GSE49577', 'GSE26309'] [3118,6950,1.000]
['Carboplatin', 'NET1'] ['Drug', 'Gene'] ['GSE49577', 'GSE26309'] [3119,6944,-1.000]
['Carboplatin', 'NET1'] ['Drug', 'Gene'] ['GSE49577', 'GSE26309'] [3122,6947,-1.000]
['Plx4720', 'ADRB1'] ['Drug', 'Gene'] ['GSE50791', 'GSE3356'] [3150,6625,1.000]
['Doxycycline', 'BRAF'] ['Drug', 'Gene'] ['GSE2624', 'GSE50791'] [3169,6976,1.000]
['Doxycycline', 'BRAF'] ['Drug', 'Gene'] ['GSE2624', 'GSE50791'] [3170,6974,1.000]
['Doxycycline', 'BRAF'] ['Drug', 'Gene'] ['GSE2624', 'GSE50791'] [3171,6973,1.000]
['Doxycycline', 'BRAF'] ['Drug', 'Gene'] ['GSE2624', 'GSE50791'] [3172,6964,1.000]
['Doxycycline', 'BRAF'] ['Drug', 'Gene'] ['GSE2624', 'GSE50791'] [3173,6962,1.000]
['Doxycycline', 'BRAF'] ['Drug', 'Gene'] ['GSE2624', 'GSE50791'] [3174,6961,1.000]
['Doxycycline', 'BRAF'] ['Drug', 'Gene'] ['GSE2624', 'GSE50791'] [3175,6972,1.000]
['Doxycycline', 'BRAF'] ['Drug', 'Gene'] ['GSE2624', 'GSE50791'] [3176,6970,1.000]
['Tamoxifen', 'BRAF'] ['Drug', 'Gene'] ['GSE4025', 'GSE50791'] [3177,6969,1.000]
['Clozapine', 'MAP3K1'] ['Drug', 'Gene'] ['GSE6467', 'GSE55624'] [3198,4469,1.000]
['Calcitriol', 'TNKS'] ['Drug', 'Gene'] ['GSE5145', 'GSE55624'] [3199,4470,1.000]
['Nsc319726', 'MAP3K1'] ['Drug', 'Gene'] ['GSE35972', 'GSE55624'] [3200,4467,1.000]
['Rituximab', 'TNKS'] ['Drug', 'Gene'] ['GSE24742', 'GSE55624'] [3201,4468,1.000]
['Rosiglitazone', 'Isotretinoin'] ['Drug', 'Drug'] ['GSE35011', 'GSE10432'] [3204,3206,0.817]
['Rosiglitazone', 'Quercetin'] ['Drug', 'Drug'] ['GSE35011', 'GSE7259'] [3204,3207,0.664]
['Isotretinoin', 'Quercetin'] ['Drug', 'Drug'] ['GSE10432', 'GSE7259'] [3206,3207,0.767]
['Vancomycin', 'VDR'] ['Drug', 'Gene'] ['GSE7793', 'GSE5145'] [3218,7429,1.000]
['Imatinib', 'MS4A1'] ['Drug', 'Gene'] ['GSE1922', 'GSE24742'] [3416,5090,1.000]
['1,25 dihydroxyvitamin d', 'BRAF'] ['Drug', 'Gene'] ['GSE15947', 'GSE42872'] [3485,8138,1.000]
['1,25 dihydroxyvitamin d', 'Ursodeoxycholic acid'] ['Drug', 'Drug'] ['GSE15947', 'GSE21266'] [3487,3494,0.673]
['1,25 dihydroxyvitamin d', 'D-serine'] ['Drug', 'Drug'] ['GSE15947', 'GSE10748'] [3487,3517,-0.609]
['1,25 dihydroxyvitamin d', 'Ascorbic acid'] ['Drug', 'Drug'] ['GSE15947', 'GSE37676'] [3487,3519,0.684]
['1,25 dihydroxyvitamin d', 'POR'] ['Drug', 'Gene'] ['GSE15947', 'GSE4262'] [3487,4426,0.603]
['1,25 dihydroxyvitamin d', 'POR'] ['Drug', 'Gene'] ['GSE15947', 'GSE4262'] [3487,4428,-0.633]
['1,25 dihydroxyvitamin d', 'Soman'] ['Drug', 'Drug'] ['GSE15947', 'GSE13428'] [3490,3522,0.635]
['Ursodeoxycholic acid', 'D-serine'] ['Drug', 'Drug'] ['GSE21266', 'GSE10748'] [3494,3517,-0.619]
['Ursodeoxycholic acid', 'Soman'] ['Drug', 'Drug'] ['GSE21266', 'GSE13428'] [3494,3526,0.673]
['Ursodeoxycholic acid', "3,3',4,4'-tetrachlorobiphenyl"] ['Drug', 'Drug'] ['GSE21266', 'GSE6878'] [3494,3541,-0.622]
['Ursodeoxycholic acid', 'POR'] ['Drug', 'Gene'] ['GSE21266', 'GSE4262'] [3494,4428,-0.750]
['Estradiol', 'Tretinoin'] ['Drug', 'Drug'] ['GSE46924', 'GSE31280'] [3495,3502,0.686]
['Estradiol', 'Cobalt dichloride hexahydrate'] ['Drug', 'Drug'] ['GSE46924', 'GSE51207'] [3495,3512,-0.623]
['Estradiol', 'Soman'] ['Drug', 'Drug'] ['GSE46924', 'GSE13428'] [3495,3527,0.684]
['Estradiol', 'POR'] ['Drug', 'Gene'] ['GSE46924', 'GSE4262'] [3495,4429,-0.630]
['Angiotensin ii', 'POR'] ['Drug', 'Gene'] ['GSE17901', 'GSE4262'] [3497,4433,-0.615]
['Tretinoin', 'Cobalt dichloride hexahydrate'] ['Drug', 'Drug'] ['GSE31280', 'GSE51207'] [3502,3512,-0.648]
['Tretinoin', "3,3',4,4'-tetrachlorobiphenyl"] ['Drug', 'Drug'] ['GSE31280', 'GSE6878'] [3502,3534,0.664]
['Tretinoin', "3,3',4,4'-tetrachlorobiphenyl"] ['Drug', 'Drug'] ['GSE31280', 'GSE6878'] [3502,3536,-0.644]
['Tretinoin', 'POR'] ['Drug', 'Gene'] ['GSE31280', 'GSE4262'] [3502,4429,-0.719]
['Tretinoin', 'Cobalt dichloride hexahydrate'] ['Drug', 'Drug'] ['GSE31280', 'GSE51207'] [3503,3510,0.628]
['Tretinoin', 'Cobalt dichloride hexahydrate'] ['Drug', 'Drug'] ['GSE31280', 'GSE51207'] [3503,3513,-0.616]
['Tretinoin', 'D-serine'] ['Drug', 'Drug'] ['GSE31280', 'GSE10748'] [3503,3514,-0.615]
['Tretinoin', "3,3',4,4'-tetrachlorobiphenyl"] ['Drug', 'Drug'] ['GSE31280', 'GSE6878'] [3503,3543,0.717]
['Tretinoin', 'POR'] ['Drug', 'Gene'] ['GSE31280', 'GSE4262'] [3503,4434,0.697]
['Tretinoin', "3,3',4,4'-tetrachlorobiphenyl"] ['Drug', 'Drug'] ['GSE31280', 'GSE6878'] [3504,3544,0.602]
['Tretinoin', 'POR'] ['Drug', 'Gene'] ['GSE31280', 'GSE4262'] [3504,4433,0.650]
['Cobalt dichloride hexahydrate', "2,2',4,4',5,5'-hexachlorobiphenyl   (pcb-153)"] ['Drug', 'Drug'] ['GSE51207', 'GSE6878'] [3510,3550,0.659]
['Cobalt dichloride hexahydrate', 'POR'] ['Drug', 'Gene'] ['GSE51207', 'GSE4262'] [3510,4434,0.691]
['Cobalt dichloride hexahydrate', 'D-serine'] ['Drug', 'Drug'] ['GSE51207', 'GSE10748'] [3512,3516,0.682]
['Cobalt dichloride hexahydrate', "3,3',4,4'-tetrachlorobiphenyl"] ['Drug', 'Drug'] ['GSE51207', 'GSE6878'] [3512,3534,-0.614]
['Cobalt dichloride hexahydrate', "3,3',4,4'-tetrachlorobiphenyl"] ['Drug', 'Drug'] ['GSE51207', 'GSE6878'] [3512,3536,0.715]
['Cobalt dichloride hexahydrate', 'POR'] ['Drug', 'Gene'] ['GSE51207', 'GSE4262'] [3512,4422,-0.696]
['Cobalt dichloride hexahydrate', 'POR'] ['Drug', 'Gene'] ['GSE51207', 'GSE4262'] [3512,4429,0.620]
['Cobalt dichloride hexahydrate', 'D-serine'] ['Drug', 'Drug'] ['GSE51207', 'GSE10748'] [3513,3514,0.737]
['Cobalt dichloride hexahydrate', "3,3',4,4'-tetrachlorobiphenyl"] ['Drug', 'Drug'] ['GSE51207', 'GSE6878'] [3513,3543,-0.605]
['Cobalt dichloride hexahydrate', 'POR'] ['Drug', 'Gene'] ['GSE51207', 'GSE4262'] [3513,4434,-0.705]
['D-serine', "3,3',4,4'-tetrachlorobiphenyl"] ['Drug', 'Drug'] ['GSE10748', 'GSE6878'] [3514,3543,-0.603]
['D-serine', 'POR'] ['Drug', 'Gene'] ['GSE10748', 'GSE4262'] [3514,4434,-0.705]
['D-serine', "3,3',4,4'-tetrachlorobiphenyl"] ['Drug', 'Drug'] ['GSE10748', 'GSE6878'] [3515,3539,0.648]
['D-serine', 'POR'] ['Drug', 'Gene'] ['GSE10748', 'GSE4262'] [3515,4426,-0.636]
['D-serine', "3,3',4,4'-tetrachlorobiphenyl"] ['Drug', 'Drug'] ['GSE10748', 'GSE6878'] [3516,3540,0.690]
['D-serine', 'POR'] ['Drug', 'Gene'] ['GSE10748', 'GSE4262'] [3516,4422,-0.635]
['D-serine', "3,3',4,4'-tetrachlorobiphenyl"] ['Drug', 'Drug'] ['GSE10748', 'GSE6878'] [3517,3541,0.688]
['D-serine', 'POR'] ['Drug', 'Gene'] ['GSE10748', 'GSE4262'] [3517,4426,-0.637]
['Ascorbic acid', 'Soman'] ['Drug', 'Drug'] ['GSE37676', 'GSE13428'] [3519,3526,0.668]
['Ascorbic acid', 'POR'] ['Drug', 'Gene'] ['GSE37676', 'GSE4262'] [3519,4426,0.713]
['Soman', 'POR'] ['Drug', 'Gene'] ['GSE13428', 'GSE4262'] [3520,4425,0.603]
['Soman', 'POR'] ['Drug', 'Gene'] ['GSE13428', 'GSE4262'] [3526,4426,0.735]
['Soman', "3,3',4,4'-tetrachlorobiphenyl"] ['Drug', 'Drug'] ['GSE13428', 'GSE6878'] [3527,3534,0.680]
['Soman', 'POR'] ['Drug', 'Gene'] ['GSE13428', 'GSE4262'] [3527,4422,0.713]
['Carboplatin', 'POR'] ['Drug', 'Gene'] ['GSE7035', 'GSE4262'] [3529,4423,0.686]
['Rosiglitazone', 'POR'] ['Drug', 'Gene'] ['GSE7035', 'GSE4262'] [3530,4423,0.651]
['Dexamethasone', 'POR'] ['Drug', 'Gene'] ['GSE22152', 'GSE4262'] [3531,4420,0.607]
["3,3',4,4'-tetrachlorobiphenyl", 'POR'] ['Drug', 'Gene'] ['GSE6878', 'GSE4262'] [3534,4422,0.738]
["3,3',4,4'-tetrachlorobiphenyl", 'POR'] ['Drug', 'Gene'] ['GSE6878', 'GSE4262'] [3536,4428,0.613]
["3,3',4,4'-tetrachlorobiphenyl", 'POR'] ['Drug', 'Gene'] ['GSE6878', 'GSE4262'] [3536,4429,0.749]
["3,3',4,4'-tetrachlorobiphenyl", 'POR'] ['Drug', 'Gene'] ['GSE6878', 'GSE4262'] [3537,4431,0.687]
["3,3',4,4'-tetrachlorobiphenyl", 'POR'] ['Drug', 'Gene'] ['GSE6878', 'GSE4262'] [3538,4431,0.689]
["3,3',4,4'-tetrachlorobiphenyl", 'POR'] ['Drug', 'Gene'] ['GSE6878', 'GSE4262'] [3539,4428,0.666]
["3,3',4,4'-tetrachlorobiphenyl", 'POR'] ['Drug', 'Gene'] ['GSE6878', 'GSE4262'] [3540,4429,0.691]
["3,3',4,4'-tetrachlorobiphenyl", 'POR'] ['Drug', 'Gene'] ['GSE6878', 'GSE4262'] [3541,4428,0.722]
["2,2',4,4',5,5'-hexachlorobiphenyl   (pcb-153)", 'POR'] ['Drug', 'Gene'] ['GSE6878', 'GSE4262'] [3550,4431,-0.631]
['Colchicine', 'ROCK1'] ['Drug', 'Gene'] ['GSE4090', 'GSE25829'] [3557,4533,1.000]
['Laminin', 'ROCK1'] ['Drug', 'Gene'] ['GSE24716', 'GSE25829'] [3558,4534,1.000]
['Morphine', 'ROCK1'] ['Drug', 'Gene'] ['GSE7762', 'GSE25829'] [3559,4535,1.000]
['Morphine', 'ROCK1'] ['Drug', 'Gene'] ['GSE7762', 'GSE25829'] [3560,4536,1.000]
['Morphine', 'ROCK1'] ['Drug', 'Gene'] ['GSE7762', 'GSE25829'] [3561,4545,1.000]
['Morphine', 'ROCK1'] ['Drug', 'Gene'] ['GSE7762', 'GSE25829'] [3562,4546,1.000]
['Morphine', 'ROCK1'] ['Drug', 'Gene'] ['GSE7762', 'GSE25829'] [3563,4547,1.000]
['Morphine', 'ROCK1'] ['Drug', 'Gene'] ['GSE7762', 'GSE25829'] [3564,4548,1.000]
['Morphine', 'ROCK1'] ['Drug', 'Gene'] ['GSE7762', 'GSE25829'] [3565,4541,1.000]
['Morphine', 'ROCK1'] ['Drug', 'Gene'] ['GSE7762', 'GSE25829'] [3566,4542,1.000]
['Morphine', 'ROCK1'] ['Drug', 'Gene'] ['GSE7762', 'GSE25829'] [3567,4543,1.000]
['Morphine', 'ROCK1'] ['Drug', 'Gene'] ['GSE7762', 'GSE25829'] [3568,4544,1.000]
['Morphine', 'ROCK1'] ['Drug', 'Gene'] ['GSE7762', 'GSE25829'] [3569,4537,1.000]
['Morphine', 'ROCK1'] ['Drug', 'Gene'] ['GSE7762', 'GSE25829'] [3570,4538,1.000]
['Morphine', 'ROCK1'] ['Drug', 'Gene'] ['GSE7762', 'GSE25829'] [3571,4539,1.000]
['Morphine', 'ROCK1'] ['Drug', 'Gene'] ['GSE7762', 'GSE25829'] [3572,4540,1.000]
['Morphine', 'Resveratrol'] ['Drug', 'Drug'] ['GSE7762', 'GSE32357'] [3581,3587,0.708]
['Morphine', 'Resveratrol'] ['Drug', 'Drug'] ['GSE7762', 'GSE32357'] [3584,3587,0.741]
['Calcitonin', 'Bleomycin'] ['Drug', 'Drug'] ['GSE60761', 'GSE2640'] [3589,3593,0.982]
['Calcitonin', 'Cisplatin'] ['Drug', 'Drug'] ['GSE60761', 'GSE6206'] [3590,3594,0.808]
['Calcitonin', 'Cisplatin'] ['Drug', 'Drug'] ['GSE60761', 'GSE6206'] [3591,3595,0.852]
['Calcitonin', 'Deferasirox'] ['Drug', 'Drug'] ['GSE60761', 'GSE11670'] [3592,3596,0.972]
['Lipopolysaccharide', 'Nickel'] ['Drug', 'Drug'] ['GSE2002', 'GSE6281'] [3640,3656,0.687]
['Curcumin', 'Nickel'] ['Drug', 'Drug'] ['GSE10896', 'GSE6281'] [3641,3657,0.647]
['Curcumin', 'Phosgene'] ['Drug', 'Drug'] ['GSE10896', 'GSE2565'] [3641,3689,0.631]
['Nickel', 'Pristane'] ['Drug', 'Drug'] ['GSE6281', 'GSE17297'] [3656,3672,0.666]
['Nickel', 'Phosgene'] ['Drug', 'Drug'] ['GSE6281', 'GSE2565'] [3657,3689,0.612]
['Pristane', 'Phosgene'] ['Drug', 'Drug'] ['GSE17297', 'GSE2565'] [3665,3689,0.600]
['Estradiol', 'Gefitinib'] ['Drug', 'Drug'] ['GSE24592', 'GSE53180'] [3756,3764,0.682]
['Estradiol', 'Gefitinib'] ['Drug', 'Drug'] ['GSE24592', 'GSE53180'] [3760,3764,0.661]
['CHRNB4', 'CHRNA4'] ['Gene', 'Gene'] ['GSE5320', 'GSE6614'] [6717,7054,0.996]