In [1]:

    

import pickle
import btmorph


    

In [2]:

    

d = pickle.load(open("res_data1L_21051982.pkl","r"))


    

In [3]:

    

res=[] # peak of the transfer impedance at each location
amp=[] # Q-factor at each location
for key in d.keys():
    amp.append(d[key][0])
    res.append(d[key][1])
for i in range(2): # some misnumbering in my code with 3 point soma
    amp.append(amp[-1])
    res.append(res[-1])


    

In [4]:

    

# this is figure 4A in the manuscript
btmorph.plot_2D_SWC("P20-DEV139.CNG.swc",cs=res,new_fig=False)


    

    




ticks_i:  [206, 217, 227, 238, 248]






    




/home/btorb/work/OIST/git/btmorph/btmorph/btviz.py:303: MatplotlibDeprecationWarning: The normalize class alias was deprecated in version 1.3. Use Normalize instead.
  norm = colors.normalize(np.min(cs),np.max(cs))






    

In [5]:

    

# this image shows the amplitude of the transfer impedance
btmorph.plot_2D_SWC("P20-DEV139.CNG.swc",cs=amp,new_fig=False)
# the color bar does not work well here because of the small range of amplitudes...


    

    




ticks_i:  [0, 0, 0, 1, 1]






    

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