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In [1]:



    


%load_ext autoreload
%autoreload 2
%matplotlib inline

from argparse import Namespace
import misc.logging_utils as logging_utils

args = Namespace()
logger = logging_utils.get_ipython_logger()



    











In [48]:



    


import numpy as np
import networkx as nx

import misc.automl_utils as automl_utils
import misc.parallel as parallel
import misc.utils as utils

import as_auto_sklearn.as_asl_command_line_utils as clu
import as_auto_sklearn.as_asl_filenames as filenames
import as_auto_sklearn.as_asl_utils as as_asl_utils
from as_auto_sklearn.as_asl_ensemble import ASaslPipeline

from as_auto_sklearn.presolver_scheduler import PresolverScheduler
from as_auto_sklearn.sequential_feature_step_selector import SequentialFeatureStepSelector



    











In [94]:



    


logger.setLevel("INFO")



    











In [4]:



    


args.training_scenarios_dir = "/mldb/oasc_scenarios/train/"
training_scenarios = automl_utils.load_all_scenarios(args.training_scenarios_dir)

scenario = training_scenarios['Svea']
feature_dependency_graph = automl_utils.extract_feature_step_dependency_graph(scenario)
feature_topo_order = nx.topological_sort(feature_dependency_graph)



    


















    






INFO     : Read ASlib scenario: /mldb/oasc_scenarios/train/Bado
WARNING  : Optional file not found: /mldb/oasc_scenarios/train/Bado/ground_truth.arff
INFO     : Read /mldb/oasc_scenarios/train/Bado/description.txt
WARNING  : Have not found algorithm_cutoff_memory
WARNING  : Have not found features_cutoff_memory
WARNING  : Have not found features_stochastic
INFO     : Read /mldb/oasc_scenarios/train/Bado/algorithm_runs.arff
INFO     : Read /mldb/oasc_scenarios/train/Bado/feature_values.arff
INFO     : Read /mldb/oasc_scenarios/train/Bado/feature_runstatus.arff
INFO     : Read /mldb/oasc_scenarios/train/Bado/feature_costs.arff
INFO     : Read /mldb/oasc_scenarios/train/Bado/cv.arff
DEBUG    : Replace all runtime data with PAR10 values for non-OK runs
INFO     : Read ASlib scenario: /mldb/oasc_scenarios/train/Camilla
WARNING  : Optional file not found: /mldb/oasc_scenarios/train/Camilla/ground_truth.arff
WARNING  : Optional file not found: /mldb/oasc_scenarios/train/Camilla/feature_costs.arff
INFO     : Read /mldb/oasc_scenarios/train/Camilla/description.txt
WARNING  : Have not found algorithm_cutoff_memory
WARNING  : Have not found features_cutoff_memory
WARNING  : Have not found features_stochastic
DEBUG    : Since we optimize quality, we use runtime cutoff of 1.
INFO     : Read /mldb/oasc_scenarios/train/Camilla/algorithm_runs.arff
INFO     : Read /mldb/oasc_scenarios/train/Camilla/feature_values.arff
WARNING  : Found 3 duplicated feature vectors
WARNING  : Index(['instance_12', 'instance_15', 'instance_82', 'instance_83',
       'instance_85'],
      dtype='object', name='instance_id')
INFO     : Read /mldb/oasc_scenarios/train/Camilla/feature_runstatus.arff
INFO     : Read /mldb/oasc_scenarios/train/Camilla/cv.arff
INFO     : Read ASlib scenario: /mldb/oasc_scenarios/train/Caren
WARNING  : Optional file not found: /mldb/oasc_scenarios/train/Caren/ground_truth.arff
INFO     : Read /mldb/oasc_scenarios/train/Caren/description.txt
WARNING  : Have not found algorithm_cutoff_memory
WARNING  : Have not found features_cutoff_memory
WARNING  : Have not found features_stochastic
INFO     : Read /mldb/oasc_scenarios/train/Caren/algorithm_runs.arff
INFO     : Read /mldb/oasc_scenarios/train/Caren/feature_values.arff
WARNING  : Found 3 duplicated feature vectors
WARNING  : Index(['instance_12', 'instance_15', 'instance_82', 'instance_83',
       'instance_85'],
      dtype='object', name='instance_id')
INFO     : Read /mldb/oasc_scenarios/train/Caren/feature_runstatus.arff
INFO     : Read /mldb/oasc_scenarios/train/Caren/feature_costs.arff
INFO     : Read /mldb/oasc_scenarios/train/Caren/cv.arff
DEBUG    : Replace all runtime data with PAR10 values for non-OK runs
INFO     : Read ASlib scenario: /mldb/oasc_scenarios/train/Magnus
WARNING  : Optional file not found: /mldb/oasc_scenarios/train/Magnus/ground_truth.arff
INFO     : Read /mldb/oasc_scenarios/train/Magnus/description.txt
WARNING  : Have not found algorithm_cutoff_memory
WARNING  : Have not found features_cutoff_memory
WARNING  : Have not found features_stochastic
INFO     : Read /mldb/oasc_scenarios/train/Magnus/algorithm_runs.arff
INFO     : Read /mldb/oasc_scenarios/train/Magnus/feature_values.arff
WARNING  : Found 20 duplicated feature vectors
WARNING  : Index(['instance_11', 'instance_18', 'instance_498', 'instance_500',
       'instance_501', 'instance_502', 'instance_504', 'instance_51',
       'instance_513', 'instance_514', 'instance_517', 'instance_518',
       'instance_53', 'instance_54', 'instance_55', 'instance_559',
       'instance_56', 'instance_568', 'instance_57', 'instance_571',
       'instance_579', 'instance_58', 'instance_59', 'instance_590',
       'instance_592', 'instance_598', 'instance_600', 'instance_63',
       'instance_66', 'instance_70', 'instance_71', 'instance_72',
       'instance_73', 'instance_74'],
      dtype='object', name='instance_id')
INFO     : Read /mldb/oasc_scenarios/train/Magnus/feature_runstatus.arff
INFO     : Read /mldb/oasc_scenarios/train/Magnus/feature_costs.arff
INFO     : Read /mldb/oasc_scenarios/train/Magnus/cv.arff
DEBUG    : Replace all runtime data with PAR10 values for non-OK runs
INFO     : Read ASlib scenario: /mldb/oasc_scenarios/train/Mira
WARNING  : Optional file not found: /mldb/oasc_scenarios/train/Mira/ground_truth.arff
INFO     : Read /mldb/oasc_scenarios/train/Mira/description.txt
WARNING  : Have not found algorithm_cutoff_memory
WARNING  : Have not found features_cutoff_memory
WARNING  : Have not found features_stochastic
INFO     : Read /mldb/oasc_scenarios/train/Mira/algorithm_runs.arff
INFO     : Read /mldb/oasc_scenarios/train/Mira/feature_values.arff
INFO     : Read /mldb/oasc_scenarios/train/Mira/feature_runstatus.arff
INFO     : Read /mldb/oasc_scenarios/train/Mira/feature_costs.arff
INFO     : Read /mldb/oasc_scenarios/train/Mira/cv.arff
DEBUG    : Replace all runtime data with PAR10 values for non-OK runs
INFO     : Read ASlib scenario: /mldb/oasc_scenarios/train/Monty
WARNING  : Optional file not found: /mldb/oasc_scenarios/train/Monty/ground_truth.arff
INFO     : Read /mldb/oasc_scenarios/train/Monty/description.txt
WARNING  : Have not found algorithm_cutoff_memory
WARNING  : Have not found features_cutoff_memory
WARNING  : Have not found features_stochastic
INFO     : Read /mldb/oasc_scenarios/train/Monty/algorithm_runs.arff
INFO     : Read /mldb/oasc_scenarios/train/Monty/feature_values.arff
WARNING  : Found 14 duplicated feature vectors
WARNING  : Index(['instance_311', 'instance_324', 'instance_47', 'instance_51',
       'instance_532', 'instance_545', 'instance_548', 'instance_553',
       'instance_561', 'instance_566', 'instance_582', 'instance_594',
       'instance_598', 'instance_599', 'instance_601', 'instance_603',
       'instance_613', 'instance_617', 'instance_618', 'instance_620',
       'instance_621', 'instance_624', 'instance_627', 'instance_629',
       'instance_630'],
      dtype='object', name='instance_id')
INFO     : Read /mldb/oasc_scenarios/train/Monty/feature_runstatus.arff
INFO     : Read /mldb/oasc_scenarios/train/Monty/feature_costs.arff
INFO     : Read /mldb/oasc_scenarios/train/Monty/cv.arff
DEBUG    : Replace all runtime data with PAR10 values for non-OK runs
INFO     : Read ASlib scenario: /mldb/oasc_scenarios/train/Oberon
WARNING  : Optional file not found: /mldb/oasc_scenarios/train/Oberon/ground_truth.arff
WARNING  : Optional file not found: /mldb/oasc_scenarios/train/Oberon/feature_costs.arff
INFO     : Read /mldb/oasc_scenarios/train/Oberon/description.txt
WARNING  : Have not found algorithm_cutoff_memory
WARNING  : Have not found features_cutoff_time
DEBUG    : Assumption FEATURES_CUTOFF_TIME == ALGORITHM_CUTOFF_TIME 
WARNING  : Have not found features_cutoff_memory
WARNING  : Have not found features_stochastic
DEBUG    : Since we optimize quality, we use runtime cutoff of 1.
INFO     : Read /mldb/oasc_scenarios/train/Oberon/algorithm_runs.arff
INFO     : Read /mldb/oasc_scenarios/train/Oberon/feature_values.arff
INFO     : Read /mldb/oasc_scenarios/train/Oberon/feature_runstatus.arff
INFO     : Read /mldb/oasc_scenarios/train/Oberon/cv.arff
INFO     : Multiply all performance data by -1, since autofolio minimizes the scores but the objective is to maximize
INFO     : Read ASlib scenario: /mldb/oasc_scenarios/train/Quill
WARNING  : Optional file not found: /mldb/oasc_scenarios/train/Quill/ground_truth.arff
INFO     : Read /mldb/oasc_scenarios/train/Quill/description.txt
WARNING  : Have not found algorithm_cutoff_memory
WARNING  : Have not found features_cutoff_memory
WARNING  : Have not found features_stochastic
INFO     : Read /mldb/oasc_scenarios/train/Quill/algorithm_runs.arff
INFO     : Read /mldb/oasc_scenarios/train/Quill/feature_values.arff
WARNING  : Found 11 duplicated feature vectors
WARNING  : Index(['instance_135', 'instance_169', 'instance_196', 'instance_243',
       'instance_255', 'instance_276', 'instance_368', 'instance_488',
       'instance_620', 'instance_630', 'instance_666', 'instance_678',
       'instance_696', 'instance_764'],
      dtype='object', name='instance_id')
INFO     : Read /mldb/oasc_scenarios/train/Quill/feature_runstatus.arff
INFO     : Read /mldb/oasc_scenarios/train/Quill/feature_costs.arff
INFO     : Read /mldb/oasc_scenarios/train/Quill/cv.arff
DEBUG    : Replace all runtime data with PAR10 values for non-OK runs
INFO     : Read ASlib scenario: /mldb/oasc_scenarios/train/Sora
WARNING  : Optional file not found: /mldb/oasc_scenarios/train/Sora/ground_truth.arff
INFO     : Read /mldb/oasc_scenarios/train/Sora/description.txt
WARNING  : Have not found algorithm_cutoff_memory
WARNING  : Have not found features_cutoff_memory
WARNING  : Have not found features_stochastic
INFO     : Read /mldb/oasc_scenarios/train/Sora/algorithm_runs.arff
INFO     : Read /mldb/oasc_scenarios/train/Sora/feature_values.arff
INFO     : Read /mldb/oasc_scenarios/train/Sora/feature_runstatus.arff
INFO     : Read /mldb/oasc_scenarios/train/Sora/feature_costs.arff
INFO     : Read /mldb/oasc_scenarios/train/Sora/cv.arff
DEBUG    : Replace all runtime data with PAR10 values for non-OK runs
INFO     : Read ASlib scenario: /mldb/oasc_scenarios/train/Svea
WARNING  : Optional file not found: /mldb/oasc_scenarios/train/Svea/ground_truth.arff
INFO     : Read /mldb/oasc_scenarios/train/Svea/description.txt
WARNING  : Have not found algorithm_cutoff_memory
WARNING  : Have not found features_cutoff_memory
WARNING  : Have not found features_stochastic
INFO     : Read /mldb/oasc_scenarios/train/Svea/algorithm_runs.arff
INFO     : Read /mldb/oasc_scenarios/train/Svea/feature_values.arff
WARNING  : Found 12 duplicated feature vectors
WARNING  : Index(['instance_1023', 'instance_1205', 'instance_1207', 'instance_1475',
       'instance_1488', 'instance_170', 'instance_364', 'instance_412',
       'instance_47', 'instance_613', 'instance_741', 'instance_849',
       'instance_901', 'instance_914'],
      dtype='object', name='instance_id')
INFO     : Read /mldb/oasc_scenarios/train/Svea/feature_runstatus.arff
INFO     : Read /mldb/oasc_scenarios/train/Svea/feature_costs.arff
INFO     : Read /mldb/oasc_scenarios/train/Svea/cv.arff
DEBUG    : Replace all runtime data with PAR10 values for non-OK runs
INFO     : Read ASlib scenario: /mldb/oasc_scenarios/train/Titus
WARNING  : Optional file not found: /mldb/oasc_scenarios/train/Titus/ground_truth.arff
WARNING  : Optional file not found: /mldb/oasc_scenarios/train/Titus/feature_costs.arff
INFO     : Read /mldb/oasc_scenarios/train/Titus/description.txt
WARNING  : Have not found algorithm_cutoff_memory
WARNING  : Have not found features_cutoff_memory
WARNING  : Have not found features_stochastic
DEBUG    : Since we optimize quality, we use runtime cutoff of 1.
INFO     : Read /mldb/oasc_scenarios/train/Titus/algorithm_runs.arff
INFO     : Read /mldb/oasc_scenarios/train/Titus/feature_values.arff
INFO     : Read /mldb/oasc_scenarios/train/Titus/feature_runstatus.arff
INFO     : Read /mldb/oasc_scenarios/train/Titus/cv.arff
INFO     : Multiply all performance data by -1, since autofolio minimizes the scores but the objective is to maximize

















In [44]:



    


args.num_cpus = 1
args.folds = range(1,11)

automl_utils.add_automl_values_to_args(args, total_training_time=20)

scenario = automl_utils.load_scenario("/mldb/oasc_scenarios/train/Sora/", return_name=False)



    


















    






INFO     : Read ASlib scenario: /mldb/oasc_scenarios/train/Sora/
WARNING  : Optional file not found: /mldb/oasc_scenarios/train/Sora/ground_truth.arff
INFO     : Read /mldb/oasc_scenarios/train/Sora/description.txt
WARNING  : Have not found algorithm_cutoff_memory
WARNING  : Have not found features_cutoff_memory
WARNING  : Have not found features_stochastic
INFO     : Read /mldb/oasc_scenarios/train/Sora/algorithm_runs.arff
INFO     : Read /mldb/oasc_scenarios/train/Sora/feature_values.arff
INFO     : Read /mldb/oasc_scenarios/train/Sora/feature_runstatus.arff
INFO     : Read /mldb/oasc_scenarios/train/Sora/feature_costs.arff
INFO     : Read /mldb/oasc_scenarios/train/Sora/cv.arff

















In [41]:



    


feature_dependency_graph.edges()



    


















    
Out[41]:








[('step_1', 'step_10'),
 ('step_1', 'step_12'),
 ('step_1', 'step_15'),
 ('step_1', 'step_3'),
 ('step_1', 'step_4'),
 ('step_1', 'step_6'),
 ('step_1', 'step_7'),
 ('step_1', 'step_8')]

















In [54]:



    


logger.setLevel('INFO')
sfss = SequentialFeatureStepSelector(args)
sfss_fit = sfss.fit(scenario)
sfss.cur_feature_steps_, sfss.cur_par10_



    


















    






INFO     : SFSS]: *** evaluating feature steps: ['step_1'] ***
INFO     : [SFSS]: evaluating fold: 8
INFO     : [SFSS]: evaluating fold: 9
INFO     : [SFSS]: evaluating fold: 10
INFO     : 
 feature_steps: ['step_1']
 min_par10: 9730.208984962406
 total_timeouts: 75
 total_solved: 324
 total_solver_times: 507377.677
 total_feature_times: 302.88800000000003
INFO     : SFSS]: *** evaluating feature steps: ['step_11'] ***
INFO     : [SFSS]: evaluating fold: 8
INFO     : [SFSS]: evaluating fold: 9
INFO     : [SFSS]: evaluating fold: 10
INFO     : 
 feature_steps: ['step_11']
 min_par10: 10241.267130325814
 total_timeouts: 79
 total_solved: 320
 total_solver_times: 531706.2289999999
 total_feature_times: 5150.5599999999995
INFO     : SFSS]: *** evaluating feature steps: ['step_13'] ***
INFO     : [SFSS]: evaluating fold: 8
INFO     : [SFSS]: evaluating fold: 9
INFO     : [SFSS]: evaluating fold: 10
INFO     : 
 feature_steps: ['step_13']
 min_par10: 11233.769117794487
 total_timeouts: 87
 total_solved: 312
 total_solver_times: 568165.8699999998
 total_feature_times: 5034.464
INFO     : SFSS]: *** evaluating feature steps: ['step_14'] ***
INFO     : [SFSS]: evaluating fold: 8
INFO     : [SFSS]: evaluating fold: 9
INFO     : [SFSS]: evaluating fold: 10
INFO     : 
 feature_steps: ['step_14']
 min_par10: 12514.64365914787
 total_timeouts: 97
 total_solved: 302
 total_solver_times: 628805.5320000001
 total_feature_times: 3010.579999999999
INFO     : SFSS]: *** evaluating feature steps: ['step_16'] ***
INFO     : [SFSS]: evaluating fold: 8
INFO     : [SFSS]: evaluating fold: 9
INFO     : [SFSS]: evaluating fold: 10
INFO     : 
 feature_steps: ['step_16']
 min_par10: 11699.336736842106
 total_timeouts: 91
 total_solved: 308
 total_solver_times: 574007.0299999999
 total_feature_times: 3953.6360000000004
INFO     : SFSS]: *** evaluating feature steps: ['step_2'] ***
INFO     : [SFSS]: evaluating fold: 8
INFO     : [SFSS]: evaluating fold: 9
INFO     : [SFSS]: evaluating fold: 10
INFO     : 
 feature_steps: ['step_2']
 min_par10: 13143.963997493734
 total_timeouts: 102
 total_solved: 297
 total_solver_times: 656155.5709999999
 total_feature_times: 10082.358
INFO     : SFSS]: *** evaluating feature steps: ['step_5'] ***
INFO     : [SFSS]: evaluating fold: 8
INFO     : [SFSS]: evaluating fold: 9
INFO     : [SFSS]: evaluating fold: 10
INFO     : 
 feature_steps: ['step_5']
 min_par10: 11129.955213032581
 total_timeouts: 86
 total_solved: 313
 total_solver_times: 571440.946
 total_feature_times: 4269.143999999999
INFO     : SFSS]: *** evaluating feature steps: ['step_9'] ***
INFO     : [SFSS]: evaluating fold: 8
INFO     : [SFSS]: evaluating fold: 9
INFO     : [SFSS]: evaluating fold: 10
INFO     : 
 feature_steps: ['step_9']
 min_par10: 9684.230145363408
 total_timeouts: 74
 total_solved: 325
 total_solver_times: 535559.6039999999
 total_feature_times: 20283.426
INFO     : SFSS]: *** evaluating feature steps: ['step_9', 'step_1'] ***
INFO     : [SFSS]: evaluating fold: 8
INFO     : [SFSS]: evaluating fold: 9
INFO     : [SFSS]: evaluating fold: 10
INFO     : 
 feature_steps: ['step_9', 'step_1']
 min_par10: 9899.635523809524
 total_timeouts: 76
 total_solved: 323
 total_solver_times: 531569.9259999999
 total_feature_times: 20584.065999999995
INFO     : SFSS]: *** evaluating feature steps: ['step_9', 'step_11'] ***
INFO     : [SFSS]: evaluating fold: 8
INFO     : [SFSS]: evaluating fold: 9
INFO     : [SFSS]: evaluating fold: 10
INFO     : 
 feature_steps: ['step_9', 'step_11']
 min_par10: 10131.578325814537
 total_timeouts: 78
 total_solved: 321
 total_solver_times: 534555.4160000002
 total_feature_times: 25425.07800000001
INFO     : SFSS]: *** evaluating feature steps: ['step_9', 'step_13'] ***
INFO     : [SFSS]: evaluating fold: 8
INFO     : [SFSS]: evaluating fold: 9
INFO     : [SFSS]: evaluating fold: 10
INFO     : 
 feature_steps: ['step_9', 'step_13']
 min_par10: 10037.693443609021
 total_timeouts: 77
 total_solved: 322
 total_solver_times: 542412.866
 total_feature_times: 25308.98199999999
INFO     : SFSS]: *** evaluating feature steps: ['step_9', 'step_14'] ***
INFO     : [SFSS]: evaluating fold: 8
INFO     : [SFSS]: evaluating fold: 9
INFO     : [SFSS]: evaluating fold: 10
INFO     : 
 feature_steps: ['step_9', 'step_14']
 min_par10: 9896.92101754386
 total_timeouts: 76
 total_solved: 323
 total_solver_times: 530746.778
 total_feature_times: 23285.101999999995
INFO     : SFSS]: *** evaluating feature steps: ['step_9', 'step_16'] ***
INFO     : [SFSS]: evaluating fold: 8
INFO     : [SFSS]: evaluating fold: 9
INFO     : [SFSS]: evaluating fold: 10
INFO     : 
 feature_steps: ['step_9', 'step_16']
 min_par10: 10149.819406015038
 total_timeouts: 78
 total_solved: 321
 total_solver_times: 542226.6810000001
 total_feature_times: 24228.157999999996
INFO     : SFSS]: *** evaluating feature steps: ['step_9', 'step_2'] ***
INFO     : [SFSS]: evaluating fold: 8
INFO     : [SFSS]: evaluating fold: 9
INFO     : [SFSS]: evaluating fold: 10
INFO     : 
 feature_steps: ['step_9', 'step_2']
 min_par10: 9921.78641102757
 total_timeouts: 76
 total_solved: 323
 total_solver_times: 541272.9160000001
 total_feature_times: 30356.87600000002
INFO     : SFSS]: *** evaluating feature steps: ['step_9', 'step_5'] ***
INFO     : [SFSS]: evaluating fold: 8
INFO     : [SFSS]: evaluating fold: 9
INFO     : [SFSS]: evaluating fold: 10
INFO     : 
 feature_steps: ['step_9', 'step_5']
 min_par10: 10031.947418546364
 total_timeouts: 77
 total_solved: 322
 total_solver_times: 539830.13
 total_feature_times: 24543.669999999995










    
Out[54]:








(['step_9'], 9684.2301453634082)

















In [57]:



    


args.config = "/prj/oasc2017/oasc.yaml"

args.training_scenario = "/mldb/oasc_scenarios/train/Sora/"
args.testing_scenario = "/mldb/oasc_scenarios/test/Sora/"

required_keys = ['base_path']
config = as_asl_utils.load_config(args.config, required_keys)



    


















    






INFO     : Reading config file

















In [58]:



    


selector_type = "rf-ensemble"
selector_filename = filenames.get_feature_selector_filename(
    config['base_path'],
    selector_type,
    note=config.get('note')
)

sfss_fit.dump(selector_filename)



    


















    






---------------------------------------------------------------------------
AttributeError                            Traceback (most recent call last)
<ipython-input-58-67a24f28f584> in <module>()
      6 )
      7 
----> 8 sfss_fit.dump(selector_filename)

AttributeError: 'SequentialFeatureStepSelector' object has no attribute 'dump'
















In [60]:



    


selected_features = automl_utils.extract_feature_names(
    scenario, 
    sfss.cur_feature_steps_
)



    











In [65]:



    


args.total_training_time = 300

pipeline = ASaslPipeline(
    args,
    features=selected_features
)

pipeline_fit = pipeline.fit(scenario)



    


















    






Time limit for a single run is higher than total time limit. Capping the limit for a single run to the total time given to SMAC (299.522756)
[WARNING] [2017-08-29 13:17:48,534:AutoMLSMBO(8675309)::6ceb4c5678a58cc49c975f365889ee16] Could not find meta-data directory /home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/metalearning/files/mean_squared_error_regression_dense










    






You are already timing task: index_run2
You are already timing task: index_run2
You are already timing task: index_run2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run2
You are already timing task: index_run2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run2
You are already timing task: index_run2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run4
You are already timing task: index_run4
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():










    






Time limit for a single run is higher than total time limit. Capping the limit for a single run to the total time given to SMAC (299.617040)
[WARNING] [2017-08-29 13:22:44,618:AutoMLSMBO(8675309)::6ceb4c5678a58cc49c975f365889ee16] Could not find meta-data directory /home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/metalearning/files/mean_squared_error_regression_dense










    






You are already timing task: index_run2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run2
You are already timing task: index_run2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run3
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run3
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
You are already timing task: index_run4
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run5
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():










    






Time limit for a single run is higher than total time limit. Capping the limit for a single run to the total time given to SMAC (299.616194)
[WARNING] [2017-08-29 13:27:40,679:AutoMLSMBO(8675309)::6ceb4c5678a58cc49c975f365889ee16] Could not find meta-data directory /home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/metalearning/files/mean_squared_error_regression_dense










    






You are already timing task: index_run2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
You are already timing task: index_run2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():










    






Time limit for a single run is higher than total time limit. Capping the limit for a single run to the total time given to SMAC (299.587354)
[WARNING] [2017-08-29 13:32:36,949:AutoMLSMBO(8675309)::6ceb4c5678a58cc49c975f365889ee16] Could not find meta-data directory /home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/metalearning/files/mean_squared_error_regression_dense










    






You are already timing task: index_run2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run2
You are already timing task: index_run2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run3
You are already timing task: index_run3
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run5
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():










    






Time limit for a single run is higher than total time limit. Capping the limit for a single run to the total time given to SMAC (299.614279)
[WARNING] [2017-08-29 13:37:33,081:AutoMLSMBO(8675309)::6ceb4c5678a58cc49c975f365889ee16] Could not find meta-data directory /home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/metalearning/files/mean_squared_error_regression_dense










    






You are already timing task: index_run2
You are already timing task: index_run2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():










    






Time limit for a single run is higher than total time limit. Capping the limit for a single run to the total time given to SMAC (299.603851)
[WARNING] [2017-08-29 13:42:29,435:AutoMLSMBO(8675309)::6ceb4c5678a58cc49c975f365889ee16] Could not find meta-data directory /home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/metalearning/files/mean_squared_error_regression_dense










    






You are already timing task: index_run2
You are already timing task: index_run2
You are already timing task: index_run2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run3
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run3
You are already timing task: index_run3
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run4
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run6
You are already timing task: index_run6
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():










    






Time limit for a single run is higher than total time limit. Capping the limit for a single run to the total time given to SMAC (299.613368)
[WARNING] [2017-08-29 13:47:25,426:AutoMLSMBO(8675309)::6ceb4c5678a58cc49c975f365889ee16] Could not find meta-data directory /home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/metalearning/files/mean_squared_error_regression_dense










    






You are already timing task: index_run2
You are already timing task: index_run2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
You are already timing task: index_run2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run3
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run3
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run4
You are already timing task: index_run4
You are already timing task: index_run4
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():










    






Time limit for a single run is higher than total time limit. Capping the limit for a single run to the total time given to SMAC (299.613014)
[WARNING] [2017-08-29 13:52:22,170:AutoMLSMBO(8675309)::6ceb4c5678a58cc49c975f365889ee16] Could not find meta-data directory /home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/metalearning/files/mean_squared_error_regression_dense










    






You are already timing task: index_run2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run3
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run3
You are already timing task: index_run3
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run4
You are already timing task: index_run4
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run4
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run5
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run6
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run6
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
You are already timing task: index_run6
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run6
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():










    






Time limit for a single run is higher than total time limit. Capping the limit for a single run to the total time given to SMAC (299.608225)
[WARNING] [2017-08-29 13:57:19,096:AutoMLSMBO(8675309)::6ceb4c5678a58cc49c975f365889ee16] Could not find meta-data directory /home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/metalearning/files/mean_squared_error_regression_dense










    






You are already timing task: index_run2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run2
You are already timing task: index_run2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():










    






Time limit for a single run is higher than total time limit. Capping the limit for a single run to the total time given to SMAC (299.610945)
[WARNING] [2017-08-29 14:02:15,377:AutoMLSMBO(8675309)::6ceb4c5678a58cc49c975f365889ee16] Could not find meta-data directory /home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/metalearning/files/mean_squared_error_regression_dense










    






You are already timing task: index_run3
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
You are already timing task: index_run3
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run6
You are already timing task: index_run6
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run7
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run7
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run9
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run11
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/nle5231/.virtualenvs/automl/lib/python3.6/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():










    






Time limit for a single run is higher than total time limit. Capping the limit for a single run to the total time given to SMAC (299.475580)
[WARNING] [2017-08-29 14:07:15,434:smac.intensification.intensification.Intensifier] Challenger was the same as the current incumbent; Skipping challenger
[WARNING] [2017-08-29 14:07:15,434:smac.intensification.intensification.Intensifier] Challenger was the same as the current incumbent; Skipping challenger










    






You are already timing task: index_run2
You are already timing task: index_run2
You are already timing task: index_run2
You are already timing task: index_run2










    






[WARNING] [2017-08-29 14:08:54,128:smac.intensification.intensification.Intensifier] Challenger was the same as the current incumbent; Skipping challenger
[WARNING] [2017-08-29 14:08:54,128:smac.intensification.intensification.Intensifier] Challenger was the same as the current incumbent; Skipping challenger










    






You are already timing task: index_run3
You are already timing task: index_run3
You are already timing task: index_run3
You are already timing task: index_run3
You are already timing task: index_run3

















In [66]:



    


model_type = "as-asl-pipeline"
model_filename = filenames.get_model_filename(
    config['base_path'],
    model_type,
    note=config.get('note')    
)



    











In [70]:



    






    


















    






---------------------------------------------------------------------------
NotFittedError                            Traceback (most recent call last)
<ipython-input-70-2cb7fa8e0f63> in <module>()
----> 1 schedules = pipeline_fit.create_solver_schedules(scenario)

~/python-projects/as-auto-sklearn/as_auto_sklearn/as_asl_ensemble.py in create_solver_schedules(self, scenario)
    314         instances
    315         """
--> 316         check_is_fitted(self, ["pipeline_", "presolver_scheduler_"])
    317 
    318         # currently, just take the predicted best solver

~/.virtualenvs/automl/lib/python3.6/site-packages/sklearn/utils/validation.py in check_is_fitted(estimator, attributes, msg, all_or_any)
    688     if not all_or_any([hasattr(estimator, attr) for attr in attributes]):
    689         # FIXME NotFittedError_ --> NotFittedError in 0.19
--> 690         raise _NotFittedError(msg % {'name': type(estimator).__name__})
    691 
    692 

NotFittedError: This ASaslPipeline instance is not fitted yet. Call 'fit' with appropriate arguments before using this method.
















In [ ]:



    


pipeline_fit.



    











In [72]:



    






    











In [73]:



    






    











In [75]:



    


p.pipeline_



    


















    
Out[75]:








Pipeline(steps=[('feature_selector', ColumnSelector(cols=[0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49])), ('nss', <misc.nan_standard_scaler.NaNStandardScaler object at 0x7f2de2a067b8>), ('selector', <as_auto_sklearn.as_asl_ensemble.ASaslEnsemble object at 0x7f2de2a065c0>)])

















In [90]:



    


from as_auto_sklearn.as_asl_ensemble import ASaslPipeline
p = ASaslPipeline(args, features=pipeline_fit.features, feature_steps=sfss.cur_feature_steps_)
p.pipeline_ = pipeline_fit.pipeline_
p.dump(model_filename)



    


















    






---------------------------------------------------------------------------
PicklingError                             Traceback (most recent call last)
<ipython-input-90-14d27270aff6> in <module>()
      2 p = ASaslPipeline(args, features=pipeline_fit.features, feature_steps=sfss.cur_feature_steps_)
      3 p.pipeline_ = pipeline_fit.pipeline_
----> 4 p.dump(model_filename)

~/python-projects/as-auto-sklearn/as_auto_sklearn/as_asl_ensemble.py in dump(self, filename)
    347         """ A convenience wrapper around joblib.dump
    348         """
--> 349         joblib.dump(self, filename)
    350 
    351     @classmethod

~/.virtualenvs/automl/lib/python3.6/site-packages/joblib/numpy_pickle.py in dump(value, filename, compress, protocol, cache_size)
    479         with _write_fileobject(filename, compress=(compress_method,
    480                                                    compress_level)) as f:
--> 481             NumpyPickler(f, protocol=protocol).dump(value)
    482     elif is_filename:
    483         with open(filename, 'wb') as f:

~/local/lib/python3.6/pickle.py in dump(self, obj)
    407         if self.proto >= 4:
    408             self.framer.start_framing()
--> 409         self.save(obj)
    410         self.write(STOP)
    411         self.framer.end_framing()

~/.virtualenvs/automl/lib/python3.6/site-packages/joblib/numpy_pickle.py in save(self, obj)
    279             return
    280 
--> 281         return Pickler.save(self, obj)
    282 
    283 

~/local/lib/python3.6/pickle.py in save(self, obj, save_persistent_id)
    519 
    520         # Save the reduce() output and finally memoize the object
--> 521         self.save_reduce(obj=obj, *rv)
    522 
    523     def persistent_id(self, obj):

~/local/lib/python3.6/pickle.py in save_reduce(self, func, args, state, listitems, dictitems, obj)
    632 
    633         if state is not None:
--> 634             save(state)
    635             write(BUILD)
    636 

~/.virtualenvs/automl/lib/python3.6/site-packages/joblib/numpy_pickle.py in save(self, obj)
    279             return
    280 
--> 281         return Pickler.save(self, obj)
    282 
    283 

~/local/lib/python3.6/pickle.py in save(self, obj, save_persistent_id)
    474         f = self.dispatch.get(t)
    475         if f is not None:
--> 476             f(self, obj) # Call unbound method with explicit self
    477             return
    478 

~/local/lib/python3.6/pickle.py in save_dict(self, obj)
    819 
    820         self.memoize(obj)
--> 821         self._batch_setitems(obj.items())
    822 
    823     dispatch[dict] = save_dict

~/local/lib/python3.6/pickle.py in _batch_setitems(self, items)
    845                 for k, v in tmp:
    846                     save(k)
--> 847                     save(v)
    848                 write(SETITEMS)
    849             elif n:

~/.virtualenvs/automl/lib/python3.6/site-packages/joblib/numpy_pickle.py in save(self, obj)
    279             return
    280 
--> 281         return Pickler.save(self, obj)
    282 
    283 

~/local/lib/python3.6/pickle.py in save(self, obj, save_persistent_id)
    519 
    520         # Save the reduce() output and finally memoize the object
--> 521         self.save_reduce(obj=obj, *rv)
    522 
    523     def persistent_id(self, obj):

~/local/lib/python3.6/pickle.py in save_reduce(self, func, args, state, listitems, dictitems, obj)
    632 
    633         if state is not None:
--> 634             save(state)
    635             write(BUILD)
    636 

~/.virtualenvs/automl/lib/python3.6/site-packages/joblib/numpy_pickle.py in save(self, obj)
    279             return
    280 
--> 281         return Pickler.save(self, obj)
    282 
    283 

~/local/lib/python3.6/pickle.py in save(self, obj, save_persistent_id)
    474         f = self.dispatch.get(t)
    475         if f is not None:
--> 476             f(self, obj) # Call unbound method with explicit self
    477             return
    478 

~/local/lib/python3.6/pickle.py in save_dict(self, obj)
    819 
    820         self.memoize(obj)
--> 821         self._batch_setitems(obj.items())
    822 
    823     dispatch[dict] = save_dict

~/local/lib/python3.6/pickle.py in _batch_setitems(self, items)
    845                 for k, v in tmp:
    846                     save(k)
--> 847                     save(v)
    848                 write(SETITEMS)
    849             elif n:

~/.virtualenvs/automl/lib/python3.6/site-packages/joblib/numpy_pickle.py in save(self, obj)
    279             return
    280 
--> 281         return Pickler.save(self, obj)
    282 
    283 

~/local/lib/python3.6/pickle.py in save(self, obj, save_persistent_id)
    474         f = self.dispatch.get(t)
    475         if f is not None:
--> 476             f(self, obj) # Call unbound method with explicit self
    477             return
    478 

~/local/lib/python3.6/pickle.py in save_list(self, obj)
    779 
    780         self.memoize(obj)
--> 781         self._batch_appends(obj)
    782 
    783     dispatch[list] = save_list

~/local/lib/python3.6/pickle.py in _batch_appends(self, items)
    803                 write(MARK)
    804                 for x in tmp:
--> 805                     save(x)
    806                 write(APPENDS)
    807             elif n:

~/.virtualenvs/automl/lib/python3.6/site-packages/joblib/numpy_pickle.py in save(self, obj)
    279             return
    280 
--> 281         return Pickler.save(self, obj)
    282 
    283 

~/local/lib/python3.6/pickle.py in save(self, obj, save_persistent_id)
    474         f = self.dispatch.get(t)
    475         if f is not None:
--> 476             f(self, obj) # Call unbound method with explicit self
    477             return
    478 

~/local/lib/python3.6/pickle.py in save_tuple(self, obj)
    734         if n <= 3 and self.proto >= 2:
    735             for element in obj:
--> 736                 save(element)
    737             # Subtle.  Same as in the big comment below.
    738             if id(obj) in memo:

~/.virtualenvs/automl/lib/python3.6/site-packages/joblib/numpy_pickle.py in save(self, obj)
    279             return
    280 
--> 281         return Pickler.save(self, obj)
    282 
    283 

~/local/lib/python3.6/pickle.py in save(self, obj, save_persistent_id)
    519 
    520         # Save the reduce() output and finally memoize the object
--> 521         self.save_reduce(obj=obj, *rv)
    522 
    523     def persistent_id(self, obj):

~/local/lib/python3.6/pickle.py in save_reduce(self, func, args, state, listitems, dictitems, obj)
    603                     "args[0] from __newobj__ args has the wrong class")
    604             args = args[1:]
--> 605             save(cls)
    606             save(args)
    607             write(NEWOBJ)

~/.virtualenvs/automl/lib/python3.6/site-packages/joblib/numpy_pickle.py in save(self, obj)
    279             return
    280 
--> 281         return Pickler.save(self, obj)
    282 
    283 

~/local/lib/python3.6/pickle.py in save(self, obj, save_persistent_id)
    474         f = self.dispatch.get(t)
    475         if f is not None:
--> 476             f(self, obj) # Call unbound method with explicit self
    477             return
    478 

~/local/lib/python3.6/pickle.py in save_type(self, obj)
    976         elif obj is type(...):
    977             return self.save_reduce(type, (...,), obj=obj)
--> 978         return self.save_global(obj)
    979 
    980     dispatch[FunctionType] = save_global

~/local/lib/python3.6/pickle.py in save_global(self, obj, name)
    925                 raise PicklingError(
    926                     "Can't pickle %r: it's not the same object as %s.%s" %
--> 927                     (obj, module_name, name))
    928 
    929         if self.proto >= 2:

PicklingError: Can't pickle <class 'as_auto_sklearn.as_asl_ensemble.ASaslEnsemble'>: it's not the same object as as_auto_sklearn.as_asl_ensemble.ASaslEnsemble
















In [ ]:



    


schedules = p.create_solver_schedules(scenario)



    











In [92]:



    


logger.setLevel("DEBUG")

validator = Validator()
stat = validator.validate(
    schedules=schedules,
    test_scenario=scenario,
    show=True
)



    


















    






---------------------------------------------------------------------------
AttributeError                            Traceback (most recent call last)
<ipython-input-92-3ab020bdda92> in <module>()
      2 
      3 validator = Validator()
----> 4 stat = validator.validate(
      5     schedules=schedules,
      6     test_scenario=scenario,

AttributeError: 'Validator' object has no attribute 'validate'
















In [88]:



    






    


















    






---------------------------------------------------------------------------
PicklingError                             Traceback (most recent call last)
<ipython-input-88-d7db7ace5369> in <module>()
----> 1 p.dump(model_filename)

~/python-projects/as-auto-sklearn/as_auto_sklearn/as_asl_ensemble.py in dump(self, filename)
    347         """ A convenience wrapper around joblib.dump
    348         """
--> 349         joblib.dump(self, filename)
    350 
    351     @classmethod

~/.virtualenvs/automl/lib/python3.6/site-packages/joblib/numpy_pickle.py in dump(value, filename, compress, protocol, cache_size)
    479         with _write_fileobject(filename, compress=(compress_method,
    480                                                    compress_level)) as f:
--> 481             NumpyPickler(f, protocol=protocol).dump(value)
    482     elif is_filename:
    483         with open(filename, 'wb') as f:

~/local/lib/python3.6/pickle.py in dump(self, obj)
    407         if self.proto >= 4:
    408             self.framer.start_framing()
--> 409         self.save(obj)
    410         self.write(STOP)
    411         self.framer.end_framing()

~/.virtualenvs/automl/lib/python3.6/site-packages/joblib/numpy_pickle.py in save(self, obj)
    279             return
    280 
--> 281         return Pickler.save(self, obj)
    282 
    283 

~/local/lib/python3.6/pickle.py in save(self, obj, save_persistent_id)
    519 
    520         # Save the reduce() output and finally memoize the object
--> 521         self.save_reduce(obj=obj, *rv)
    522 
    523     def persistent_id(self, obj):

~/local/lib/python3.6/pickle.py in save_reduce(self, func, args, state, listitems, dictitems, obj)
    603                     "args[0] from __newobj__ args has the wrong class")
    604             args = args[1:]
--> 605             save(cls)
    606             save(args)
    607             write(NEWOBJ)

~/.virtualenvs/automl/lib/python3.6/site-packages/joblib/numpy_pickle.py in save(self, obj)
    279             return
    280 
--> 281         return Pickler.save(self, obj)
    282 
    283 

~/local/lib/python3.6/pickle.py in save(self, obj, save_persistent_id)
    474         f = self.dispatch.get(t)
    475         if f is not None:
--> 476             f(self, obj) # Call unbound method with explicit self
    477             return
    478 

~/local/lib/python3.6/pickle.py in save_type(self, obj)
    976         elif obj is type(...):
    977             return self.save_reduce(type, (...,), obj=obj)
--> 978         return self.save_global(obj)
    979 
    980     dispatch[FunctionType] = save_global

~/local/lib/python3.6/pickle.py in save_global(self, obj, name)
    925                 raise PicklingError(
    926                     "Can't pickle %r: it's not the same object as %s.%s" %
--> 927                     (obj, module_name, name))
    928 
    929         if self.proto >= 2:

PicklingError: Can't pickle <class 'as_auto_sklearn.as_asl_ensemble.ASaslPipeline'>: it's not the same object as as_auto_sklearn.as_asl_ensemble.ASaslPipeline
















In [ ]:



    






    











In [31]:



    


4196/(226+8)



    


















    
Out[31]:








17.931623931623932

Content source: bmmalone/as-auto-sklearn

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