In [51]:

    

import urllib2
import pprint

strict_registry_desc = "https://elixir-registry.cbs.dtu.dk/resources/biotools-1.1/biotools-1.1_mandatoryFieldsOnly.json"
full_registry_desc = "https://elixir-registry.cbs.dtu.dk/resources/biotools-1.1/biotools-1.1.json"
response = urllib2.urlopen(full_registry_desc)


    

In [52]:

    

import json
import yaml


    

In [53]:

    

struct = json.loads( response.read() )


    

In [54]:

    

elixir = yaml.safe_dump(struct, indent=4, allow_unicode=True, default_flow_style=False)


    

In [55]:

    

print elixir


    

    




accessibility: Public
canonicalID: token
collection:
- Name of some collection
- Name of some collection
contact:
-   contactEmail: FredBloggs@gmail.com
    contactName: Fred Bloggs
    contactRole:
    - Scientific
    - Developer
    contactTel: String
    contactURL: http://someURL.org
-   contactEmail: FredBloggs@gmail.com
    contactName: Fred Bloggs
    contactRole:
    - Helpdesk
    - Scientific
    contactTel: String
    contactURL: http://someURL.org
cost: Free
credits:
    creditsContributor:
    - Judi Bloggs
    - Judi Bloggs
    - Judi Bloggs
    - Judi Bloggs
    creditsDeveloper:
    - Joe Bloggs
    - Joe Bloggs
    - Joe Bloggs
    - Joe Bloggs
    creditsFunding:
    - 'Grant number: 12345'
    - 'Grant number: 12345'
    - 'Grant number: 12345'
    - 'Grant number: 12345'
    creditsInfrastructure:
    - Infrastructure name
    - Infrastructure name
    - Infrastructure name
    - Infrastructure name
    creditsInstitution:
    - Institute name
    - Institute name
    - Institute name
    - Institute name
description: Description of resource goes here.
docs:
    docsCitationInstructions: http://toolname.org/docs/citing
    docsDownload: http://toolname.org/downloads
    docsHome: http://toolname.org/docs
    docsTermsOfUse: http://toolname.org/docs/terms
elixirInfo:
    elixirNode: Denmark
    elixirStatus: ELIXIR Named Service
function:
-   functionDescription: Concise description of the function.
    functionHandle: --someOption
    functionName:
    -   term: EDAM Function
        uri: http://edamontology.org/operation_0004
    -   term: EDAM Function
        uri: http://edamontology.org/operation_0004
    input:
    -   dataDescription: Concise description of the data.
        dataFormat:
        -   term: EDAM format
            uri: http://edamontology.org/format_1915
        -   term: EDAM format
            uri: http://edamontology.org/format_1915
        dataHandle: --someOption
        dataType:
            term: EDAM data
            uri: http://edamontology.org/data_0006
    -   dataDescription: Concise description of the data.
        dataFormat:
        -   term: EDAM format
            uri: http://edamontology.org/format_1915
        -   term: EDAM format
            uri: http://edamontology.org/format_1915
        dataHandle: --someOption
        dataType:
            term: EDAM data
            uri: http://edamontology.org/data_0006
    output:
    -   dataDescription: Concise description of the data.
        dataFormat:
        -   term: EDAM format
            uri: http://edamontology.org/format_1915
        -   term: EDAM format
            uri: http://edamontology.org/format_1915
        dataHandle: --someOption
        dataType:
            term: EDAM data
            uri: http://edamontology.org/data_0006
    -   dataDescription: Concise description of the data.
        dataFormat:
        -   term: EDAM format
            uri: http://edamontology.org/format_1915
        -   term: EDAM format
            uri: http://edamontology.org/format_1915
        dataHandle: --someOption
        dataType:
            term: EDAM data
            uri: http://edamontology.org/data_0006
-   functionDescription: Concise description of the function.
    functionHandle: --someOption
    functionName:
    -   term: EDAM Function
        uri: http://edamontology.org/operation_0004
    -   term: EDAM Function
        uri: http://edamontology.org/operation_0004
    input:
    -   dataDescription: Concise description of the data.
        dataFormat:
        -   term: EDAM format
            uri: http://edamontology.org/format_1915
        -   term: EDAM format
            uri: http://edamontology.org/format_1915
        dataHandle: --someOption
        dataType:
            term: EDAM data
            uri: http://edamontology.org/data_0006
    -   dataDescription: Concise description of the data.
        dataFormat:
        -   term: EDAM format
            uri: http://edamontology.org/format_1915
        -   term: EDAM format
            uri: http://edamontology.org/format_1915
        dataHandle: --someOption
        dataType:
            term: EDAM data
            uri: http://edamontology.org/data_0006
    output:
    -   dataDescription: Concise description of the data.
        dataFormat:
        -   term: EDAM format
            uri: http://edamontology.org/format_1915
        -   term: EDAM format
            uri: http://edamontology.org/format_1915
        dataHandle: --someOption
        dataType:
            term: EDAM data
            uri: http://edamontology.org/data_0006
    -   dataDescription: Concise description of the data.
        dataFormat:
        -   term: EDAM format
            uri: http://edamontology.org/format_1915
        -   term: EDAM format
            uri: http://edamontology.org/format_1915
        dataHandle: --someOption
        dataType:
            term: EDAM data
            uri: http://edamontology.org/data_0006
homepage: http://resourcename.org
interface:
-   interfaceDocs: http://someurl.org
    interfaceSpecFormat: Swagger
    interfaceSpecURL: http://someurl.org
    interfaceType: Command line
-   interfaceDocs: http://someurl.org
    interfaceSpecFormat: WSDL2
    interfaceSpecURL: http://someurl.org
    interfaceType: Command line
language:
- Java
- Java
license: GNU General Public License v3
maturity: Young
mirror:
- http://someURL.org
- http://someURL.org
name: ResourceName
platform:
- Linux
- Linux
publications:
    publicationsOtherID:
    - 10.1006/jmbi.1995.0238
    - 10.1006/jmbi.1995.0238
    publicationsPrimaryID: 10.1006/jmbi.1995.0238
resourceType:
- Tool
- Tool
sourceRegistry: http://sourceregistry.com/toolname
tag:
-   term: A free-text tag
    uri: http
-   term: A free-text tag
    uri: http
topic:
-   term: EDAM Topic
    uri: http://edamontology.org/topic_0003
-   term: EDAM Topic
    uri: http://edamontology.org/topic_0003
uses:
-   usesHomepage: http://someURL.org
    usesName: Name of some resource
    usesVersion: Version number of some resource
-   usesHomepage: http://someURL.org
    usesName: Name of some resource
    usesVersion: Version number of some resource
version: Version 1

In [ ]: