In [1]:

    

import urllib2


    

In [2]:

    

import ipython_glmol
import ipython_glmol.test_data


    

In [3]:

    

pdb_lines = urllib2.urlopen("http://www.rcsb.org/pdb/files/1sfc.pdb").readlines()
pdb_lines = [l.strip() for l in pdb_lines if l.startswith("ATOM")]


    

In [4]:

    

from ipython_glmol.glmol_repr import Ribbon, Line, BackgroundColor, Helix
from ipython_glmol.glmol_selectors import All, Atom, Heavyatom, Backbone


    

In [5]:

    

test_embed = ipython_glmol.PDBEmbed(ipython_glmol.test_pdb_data) + Helix(Atom[53:82]) + Ribbon() + Line(Heavyatom()) + BackgroundColor("000000")
test_embed


    

    
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In [6]:

    

from ipython_glmol.glmol_repr import Sphere, Line


    

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full_embed = ipython_glmol.PDBEmbed("\n".join(pdb_lines + [""])) + Sphere(Backbone()) + Line(Heavyatom() )
full_embed


    

    
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