In [1]:

    

%pylab inline
from glob import glob
from matrixscreener import Experiment
from tifffile import imread, imsave, imshow

folders = glob('/Users/arve/Dokumenter/TFY4500/unstained/experiment--*')

experiments = []
for f in folders:
    experiments.append(Experiment(f))
    print(f + ' loaded')


    

    




Populating the interactive namespace from numpy and matplotlib
/Users/arve/Dokumenter/TFY4500/unstained/experiment--row 0-2 loaded
Warning: Did scan complete? Number of chambers != wells_u * wells_v in /Users/arve/Dokumenter/TFY4500/unstained/experiment--row 3-5
/Users/arve/Dokumenter/TFY4500/unstained/experiment--row 3-5 loaded

In [4]:

    

files = []
for experiment in experiments:
    files.extend(experiment.stitch())
imshow(imread(files[0]))


    

    
Out[4]:





(<matplotlib.figure.Figure at 0x10cb7c978>,
 <matplotlib.axes._subplots.AxesSubplot at 0x10cb8e3c8>,
 <matplotlib.image.AxesImage at 0x10f8dc8d0>)