In [8]:

    

%pylab inline
files = (['/Users/arve/Dokumenter/TFY4500/comparison/experiment--2014_11_12_13_08_03/slide--S00/chamber--U00--V00/field--X00--Y00/image--L00--S00--U00--V00--J08--E00--O00--X00--Y00--T00--Z00--C00.ome.tif',
         '/Users/arve/Dokumenter/TFY4500/comparison/experiment--2014_11_12_13_08_03/slide--S00/chamber--U00--V00/field--X00--Y01/image--L00--S00--U00--V00--J08--E00--O00--X00--Y01--T00--Z00--C00.ome.tif',
         '/Users/arve/Dokumenter/TFY4500/comparison/experiment--2014_11_12_13_08_03/slide--S00/chamber--U00--V00/field--X01--Y00/image--L00--S00--U00--V00--J08--E00--O00--X01--Y00--T00--Z00--C00.ome.tif',
         '/Users/arve/Dokumenter/TFY4500/comparison/experiment--2014_11_12_13_08_03/slide--S00/chamber--U00--V00/field--X01--Y01/image--L00--S00--U00--V00--J08--E00--O00--X01--Y01--T00--Z00--C00.ome.tif',
         ],
         ['/Users/arve/Dokumenter/TFY4500/comparison/experiment--2014_11_12_13_08_03/slide--S00/chamber--U00--V00/field--X00--Y00/image--L00--S00--U00--V00--J08--E00--O00--X00--Y00--T00--Z00--C01.ome.tif',
         '/Users/arve/Dokumenter/TFY4500/comparison/experiment--2014_11_12_13_08_03/slide--S00/chamber--U00--V00/field--X00--Y01/image--L00--S00--U00--V00--J08--E00--O00--X00--Y01--T00--Z00--C01.ome.tif',
         '/Users/arve/Dokumenter/TFY4500/comparison/experiment--2014_11_12_13_08_03/slide--S00/chamber--U00--V00/field--X01--Y00/image--L00--S00--U00--V00--J08--E00--O00--X01--Y00--T00--Z00--C01.ome.tif',
         '/Users/arve/Dokumenter/TFY4500/comparison/experiment--2014_11_12_13_08_03/slide--S00/chamber--U00--V00/field--X01--Y01/image--L00--S00--U00--V00--J08--E00--O00--X01--Y01--T00--Z00--C01.ome.tif',
         ])


    

    




Populating the interactive namespace from numpy and matplotlib






    




WARNING: pylab import has clobbered these variables: ['f']
`%matplotlib` prevents importing * from pylab and numpy

In [10]:

    

import tifffile
merged = np.zeros((2048,2048))
for channel in files:
    for f in channel:
        img = tifffile.imread(f, key=0)
        img = rot90(img, k=3)
        tifffile.imshow(img, figure=figure())


    

In [ ]: