In [1]:

    

%pylab inline


    

    




Populating the interactive namespace from numpy and matplotlib

In [2]:

    

from glob import glob
files = glob('/Users/arve/Dokumenter/TFY4500/unstained/experiment--row 3-5/*.tif')


    

In [8]:

    

import tifffile
import os
from scipy.misc import imsave
!mkdir unstained


    

    




mkdir: unstained: File exists

In [9]:

    

for f in files:
    img = tifffile.imread(f)
    name = os.path.basename(f).split('.tif')[0] + '.png'
    imsave('unstained/' + name, img)


    

In [11]:

    

png_files = !ls unstained
len(png_files) == len(files)


    

    
Out[11]:





True