notebook.community

Edit and run



In [4]:

    
%run setup.ipynb



In [5]:

    
# %%bash
# # copy the specific regions haplotypes from phase 1 into the repo, as they are small
# for f in ../ngs.sanger.ac.uk/production/ag1000g/phase1/AR3.1/haplotypes/specific_regions/PARA/*; do
#     cp -v --no-clobber $f ../data/ag1000g.phase1.AR3.1.haplotypes.specific_regions.`basename $f`
# done



In [6]:

    
%%bash
cp -v ../ngs.sanger.ac.uk/production/ag1000g/phase1/AR3.1/haplotypes/haplotypes.meta.txt ../data/ag1000g.phase1.AR3.1.haplotypes.meta.txt









    



‘../ngs.sanger.ac.uk/production/ag1000g/phase1/AR3.1/haplotypes/haplotypes.meta.txt’ -> ‘../data/ag1000g.phase1.AR3.1.haplotypes.meta.txt’



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