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In [2]:



    


# coding=utf-8
from pythonpic import plotting_parser
from pythonpic.configs import run_coldplasma, run_twostream, run_laser, run_wave
from pythonpic.visualization import animation
from pythonpic.helper_functions.physics import epsilon_zero, lightspeed
from matplotlib import rc, animation
from pythonpic.tests import test_pusher
from pythonpic.classes import load_simulation
%matplotlib inline
rc('animation', html='html5')

show_static = True
show_animation = False
args = True, True, False, False, False
args_animation = False, False, True, False, False



    


















    






---------------------------------------------------------------------------
ModuleNotFoundError                       Traceback (most recent call last)
<ipython-input-2-3f7fd169b211> in <module>()
      1 
----> 2 from pythonpic import plotting_parser
      3 from pythonpic.configs import run_coldplasma, run_twostream, run_laser, run_wave
      4 from pythonpic.visualization import animation
      5 from pythonpic.helper_functions.physics import epsilon_zero, lightspeed

/home/dominik/Inzynierka/pythonpic/pythonpic/__init__.py in <module>()
      2 """A work in progress particle-in-cell code written in Python, optimized for speed as well as readability."""
      3 
----> 4 from .visualization.plotting import plots
      5 from .helper_functions.helpers import plotting_parser
      6 from .algorithms import BoundaryCondition

/home/dominik/Inzynierka/pythonpic/pythonpic/visualization/__init__.py in <module>()
      1 # coding=utf-8
----> 2 from . import animation, plotting

/home/dominik/Inzynierka/pythonpic/pythonpic/visualization/plotting.py in <module>()
      6 import matplotlib.pyplot as plt
      7 
----> 8 from ..classes import simulation
      9 from ..visualization import animation
     10 from ..visualization import static_plots

/home/dominik/Inzynierka/pythonpic/pythonpic/classes/__init__.py in <module>()
      1 # coding=utf-8
----> 2 from .grid import PeriodicGrid, NonperiodicGrid, PeriodicTestGrid, NonperiodicTestGrid
      3 from .simulation import Simulation, load_simulation
      4 from .species import Species, Particle, TestSpecies

/home/dominik/Inzynierka/pythonpic/pythonpic/classes/grid.py in <module>()
      7 
      8 
----> 9 from ..helper_functions import physics
     10 from ..algorithms import charge_deposition, FieldSolver, BoundaryCondition, current_deposition, field_interpolation
     11 

/home/dominik/Inzynierka/pythonpic/pythonpic/helper_functions/physics.py in <module>()
      3 
      4 import numpy as np
----> 5 import numba
      6 
      7 

ModuleNotFoundError: No module named 'numba'
















In [2]:



    


#!rm -r data_analysis



    











In [3]:



    


plasma_frequency = 1
push_mode = 2
N_electrons = 1024
NG = 64
qmratio = -1
T = 10
scaling = 1
c = 10
epsilon_zero = 1
S = run_coldplasma.cold_plasma_oscillations(f"COSCALING", qmratio=qmratio, plasma_frequency=plasma_frequency, NG=NG,
                             N_electrons=N_electrons, epsilon_zero=epsilon_zero, push_mode=push_mode, save_data=False,
                                            T = T, scaling=scaling, c=c).lazy_run()



    


















    






epsilon_zero:1
save_data:False
Path is data_analysis/coldplasma/COSCALING/COSCALING.hdf5
Found file. Attempting to load...
Postprocessing simulation.
Managed to load file.

















In [4]:



    


run_coldplasma.plots(S, *args, alpha=0.3)



    


















    
























In [5]:



    


S2 = run_twostream.two_stream_instability(f"TS_UNSTABLE",
                                         ).lazy_run()



    


















    






Running two stream instability
plasma frequency: 1.0
timestep: 0.19634954084936207
iloczyn: 0.19634954084936207
Pusher seems stable with dt * plasma frequency = 1.96e-01 < 2.
k0*v0/w0 is 0.05 which means the regime is unstable(stable above sqrt(2))
Path is data_analysis/twostream/TS_UNSTABLE/TS_UNSTABLE.hdf5
Found file. Attempting to load...
Postprocessing simulation.
Managed to load file.










    






/home/dominik/Inzynierka/pythonpic/pythonpic/helper_functions/physics.py:27: UserWarning: Plasma parameter seems low at 0.039! Low density plasma.
  warnings.warn(f"Plasma parameter seems low at {pp:.3f}! Low density plasma.")

















In [6]:



    


# !rm -r data_analysis/twostream/



    











In [7]:



    


run_twostream.plots(S2, *args, alpha=0.3)



    


















    
























In [12]:



    


S3 = run_twostream.two_stream_instability(f"TS_STABLE",
                                         ).lazy_run()



    


















    






Running two stream instability
plasma frequency: 1.0
timestep: 0.19634954084936207
iloczyn: 0.19634954084936207
Pusher seems stable with dt * plasma frequency = 1.96e-01 < 2.
k0*v0/w0 is 0.05 which means the regime is unstable(stable above sqrt(2))
Path is data_analysis/twostream/TS_STABLE/TS_STABLE.hdf5
Found file. Attempting to load...
Postprocessing simulation.
Managed to load file.










    






/home/dominik/Inzynierka/pythonpic/pythonpic/helper_functions/physics.py:27: UserWarning: Plasma parameter seems low at 0.039! Low density plasma.
  warnings.warn(f"Plasma parameter seems low at {pp:.3f}! Low density plasma.")

















In [13]:



    


run_twostream.plots(S3, *args, alpha=0.3)



    


















    
























In [14]:



    


S4 = test_pusher.test_relativistic_magnetic_field(test_pusher.g(), 1, 1e-4)



    











In [15]:



    


run_twostream.plots(S4, *args, alpha=0.3)



    


















    






Postprocessing grid.
Postprocessing particles.










    






---------------------------------------------------------------------------
AttributeError                            Traceback (most recent call last)
<ipython-input-15-4cbc7ef56aa3> in <module>()
----> 1 run_twostream.plots(S4, *args, alpha=03.)

~/Inzynierka/pythonpic/pythonpic/visualization/plotting.py in plots(file, show_static, save_static, show_animation, save_animation, snapshot_animation, alpha, animation_type, static_type, frames)
     51         if isinstance(file, simulation.Simulation):
     52             S = file
---> 53             S.postprocess()
     54         else:
     55             try:

~/Inzynierka/pythonpic/pythonpic/classes/simulation.py in postprocess(self)
     53             self.total_kinetic_energy = np.zeros(self.NT)
     54             for species in self.list_species:
---> 55                 species.postprocess()
     56                 self.total_kinetic_energy += species.kinetic_energy_history
     57             print("Postprocessing simulation.")

~/Inzynierka/pythonpic/pythonpic/classes/species.py in postprocess(self)
    284             print(f"Postprocessing {self.name}.")
    285             self.density_history[...] *= self.scaling
--> 286             self.postprocessed = self.group.attrs['postprocessed'] = True
    287             self.file.flush()
    288 

AttributeError: 'TestSpecies' object has no attribute 'group'
















In [25]:



    


for dataset in ["75000_1378_run_21_Circular",
                "75000_1378_run_23_Circular",
                "75000_1378_run_21_Ey",
                "75000_1378_run_23_Ey"]:
#     S_laser = run_laser.laser(dataset, 75000, 1378, 0, 0, 0).lazy_run()
    S_laser = run_laser.laser(dataset, 1, 100, 100, 0, 0).lazy_run()
    run_laser.plots(S_laser, *args, alpha=0.3)
    run_laser.plots(S_laser,
                    show_animation = False,
                    snapshot_animation=True,
                    frames = list(range(0, 7000, 100)), alpha=0.3,)



    


















    






10.0 grid cells per laser wavelength.
Thermal velocity for this simulation should be on the order of 0.629c.
Simulation prepared.
Path is data_analysis/laser-shield/v32/75000_1378_run_21_Circular/75000_1378_run_21_Circular.hdf5
Found file. Attempting to load...
Postprocessing simulation.
Managed to load file.










    

















    






For direction x, maxfield is 4.61e+11
For direction y, maxfield is 8.76e+11
For direction z, maxfield is 8.82e+11
Drawing animation as snapshots.
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10.0 grid cells per laser wavelength.
Thermal velocity for this simulation should be on the order of 0.629c.
Simulation prepared.
Path is data_analysis/laser-shield/v32/75000_1378_run_23_Circular/75000_1378_run_23_Circular.hdf5
Found file. Attempting to load...
Postprocessing simulation.
Managed to load file.










    

















    






For direction x, maxfield is 6.09e+12
For direction y, maxfield is 9.91e+12
For direction z, maxfield is 9.58e+12
Drawing animation as snapshots.
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10.0 grid cells per laser wavelength.
Thermal velocity for this simulation should be on the order of 0.629c.
Simulation prepared.
Path is data_analysis/laser-shield/v32/75000_1378_run_21_Ey/75000_1378_run_21_Ey.hdf5
Found file. Attempting to load...
Postprocessing simulation.
Managed to load file.










    

















    






/home/dominik/.anaconda3/envs/pic_dev/lib/python3.6/site-packages/matplotlib/axes/_base.py:3193: UserWarning: Attempting to set identical bottom==top results
in singular transformations; automatically expanding.
bottom=0.0, top=0.0
  'bottom=%s, top=%s') % (bottom, top))










    






For direction x, maxfield is 5.59e+11
For direction y, maxfield is 1.24e+12
For direction z, maxfield is 4.08e+03
Drawing animation as snapshots.
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10.0 grid cells per laser wavelength.
Thermal velocity for this simulation should be on the order of 0.629c.
Simulation prepared.
Path is data_analysis/laser-shield/v32/75000_1378_run_23_Ey/75000_1378_run_23_Ey.hdf5
Found file. Attempting to load...
Postprocessing simulation.
Managed to load file.










    

















    






For direction x, maxfield is 8.10e+12
For direction y, maxfield is 1.35e+13
For direction z, maxfield is 4.45e+04
Drawing animation as snapshots.
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In [6]:



    


!tree data_analysis/laser-shield/



    


















    






data_analysis/laser-shield/
├── 75000_1378_run_21_Circular -> /home/dominik/Inzynierka/pythonpic/data_analysis/laser-shield/v32/75000_1378_run_21_Circular/
├── 75000_1378_run_21_Ey -> /home/dominik/Inzynierka/pythonpic/data_analysis/laser-shield/v32/75000_1378_run_21_Ey
├── 75000_1378_run_23_Circular -> /home/dominik/Inzynierka/pythonpic/data_analysis/laser-shield/v32/75000_1378_run_23_Circular/
├── 75000_1378_run_23_Ey -> /home/dominik/Inzynierka/pythonpic/data_analysis/laser-shield/v32/75000_1378_run_23_Ey
└── v32
    └── 75000_1378_run_21_Circular

6 directories, 0 files

















In [22]:



    


run_laser.plots(S_laser, snapshot_animation=True, frames = [0, 1000, 2000, 5000], alpha=0.3,)



    


















    






/home/dominik/.anaconda3/envs/pic_dev/lib/python3.6/site-packages/matplotlib/axes/_base.py:3193: UserWarning: Attempting to set identical bottom==top results
in singular transformations; automatically expanding.
bottom=0.0, top=0.0
  'bottom=%s, top=%s') % (bottom, top))










    






For direction x, maxfield is 8.10e+12
For direction y, maxfield is 1.35e+13
For direction z, maxfield is 4.45e+04
Drawing animation as snapshots.
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In [ ]:



    


S3 = run_twostream.two_stream_instability(f"TS_STABLE",
                                         ).lazy_run()



    











In [ ]:



    


S5 =



    











In [14]:



    


!ls data_analysis/laser-shield/75000_1378_run_23_Ey/



    


















    






75000_1378_run_23_Ey.hdf5  75000_1378_run_23_Ey.png

















In [15]:



    


!tree data_analysis/



    


















    






data_analysis/
├── 75000_1378_run_23_Ey
│   ├── 75000_1378_run_23_Ey_000000.png
│   ├── 75000_1378_run_23_Ey_001000.png
│   ├── 75000_1378_run_23_Ey_002000.png
│   └── 75000_1378_run_23_Ey_005000.png
├── coldplasma
│   └── COSCALING
│       ├── COSCALING.hdf5
│       └── COSCALING.png
├── laser-shield
│   ├── 75000_1378_run_21_Circular -> /home/dominik/Inzynierka/pythonpic/data_analysis/laser-shield/v32/75000_1378_run_21_Circular/
│   ├── 75000_1378_run_21_Ey -> /home/dominik/Inzynierka/pythonpic/data_analysis/laser-shield/v32/75000_1378_run_21_Ey
│   ├── 75000_1378_run_23_Circular -> /home/dominik/Inzynierka/pythonpic/data_analysis/laser-shield/v32/75000_1378_run_23_Circular/
│   ├── 75000_1378_run_23_Ey -> /home/dominik/Inzynierka/pythonpic/data_analysis/laser-shield/v32/75000_1378_run_23_Ey
│   └── v32
│       └── 75000_1378_run_21_Circular
└── twostream
    ├── TSPLOTTING
    │   ├── TSPLOTTING.hdf5
    │   └── TSPLOTTING.png
    ├── TS_STABLE -> /home/dominik/Inzynierka/pythonpic/data_analysis/twostream/TS_STABLE/
    └── TS_UNSTABLE -> /home/dominik/Inzynierka/pythonpic/data_analysis/twostream/TS_UNSTABLE/

14 directories, 8 files

Content source: StanczakDominik/PythonPIC

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