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In [5]:

    
import os

import pandas as pd
import parse
import numpy as np
import multihash
import rdflib as rl
import urllib
#import prov.model as pm

bucket_url_prefix = 'https://s3.amazonaws.com/fcp-indi/'
info_file = 'fcp-indi'



In [2]:

    
with open(info_file, 'rt') as fp:
    projects = []
    for val in fp.readlines():
        if val.strip():
            projects.append(val.strip().split()[4].split('/')[2])
np.unique(projects)









    Out[2]:





array(['ABIDE_BIDS', 'ABIDE_Initiative', 'ACPI', 'ADHD200',
       'BrainGenomicsSuperstructProject', 'CC_ME', 'CORR',
       'CPAC_Regression_Test', 'HBNSS', 'HBNSSI', 'INDI', 'RocklandSample'], 
      dtype='<U31')



In [3]:

    
with open(info_file, 'rt') as fp:
    pheno = [val.strip().split()[-1] for val in fp.readlines() if 
             any([key in val.lower() for key in ['participants.tsv', 'pheno']])
             and all([key not in val.lower() for key in ['outputs', 'tsv.gz', 'cpac_regression_test', 
                                                         'events.tsv', 'sessions.tsv', 'tar.gz']])]
pheno









    Out[3]:





['data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_CALTECH.csv',
 'data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_CMU.csv',
 'data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_KKI.csv',
 'data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_LEUVEN_1.csv',
 'data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_LEUVEN_2.csv',
 'data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_MAX_MUN.csv',
 'data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_NYU.csv',
 'data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_OHSU.csv',
 'data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_OLIN.csv',
 'data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_PITT.csv',
 'data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_SBL.csv',
 'data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_SDSU.csv',
 'data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_STANFORD.csv',
 'data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_TRINITY(1).csv',
 'data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_UCLA_1.csv',
 'data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_UCLA_2.csv',
 'data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_UM_1.csv',
 'data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_UM_2.csv',
 'data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_USM.csv',
 'data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_YALE.csv',
 'data/Projects/ABIDE_Initiative/Phenotypic_V1_0b.csv',
 'data/Projects/ABIDE_Initiative/Phenotypic_V1_0b_preprocessed.csv',
 'data/Projects/ABIDE_Initiative/Phenotypic_V1_0b_preprocessed1.csv',
 'data/Projects/ACPI/PhenotypicData/acpi_aggregated_phenotypic_data.csv',
 'data/Projects/ACPI/PhenotypicData/du_1_phenotypic_data.csv',
 'data/Projects/ACPI/PhenotypicData/du_1_phenotypic_key.csv',
 'data/Projects/ACPI/PhenotypicData/mta_1_phenotypic_data.csv',
 'data/Projects/ACPI/PhenotypicData/mta_1_phenotypic_key.docx',
 'data/Projects/ACPI/PhenotypicData/nyu_1_phenotypic_data.csv',
 'data/Projects/ADHD200/RawData/Brown/Brown_TestRelease_phenotypic.csv',
 'data/Projects/ADHD200/RawData/Brown_TestRelease_phenotypic.csv',
 'data/Projects/ADHD200/RawData/KKI/KKI_phenotypic.csv',
 'data/Projects/ADHD200/RawData/KKI_phenotypic.csv',
 'data/Projects/ADHD200/RawData/NYU/NYU_TestRelease_phenotypic.csv',
 'data/Projects/ADHD200/RawData/NYU/NYU_phenotypic.csv',
 'data/Projects/ADHD200/RawData/NYU_phenotypic.csv',
 'data/Projects/ADHD200/RawData/NeuroIMAGE/NeuroIMAGE_TestRelease_phenotypic.csv',
 'data/Projects/ADHD200/RawData/NeuroIMAGE/NeuroIMAGE_phenotypic.csv',
 'data/Projects/ADHD200/RawData/NeuroIMAGE_phenotypic.csv',
 'data/Projects/ADHD200/RawData/OHSU/OHSU_TestRelease_phenotypic.csv',
 'data/Projects/ADHD200/RawData/OHSU_TestRelease_phenotypic.csv',
 'data/Projects/ADHD200/RawData/OHSU_phenotypic.csv',
 'data/Projects/ADHD200/RawData/Peking_1/Peking_1_phenotypic.csv',
 'data/Projects/ADHD200/RawData/Peking_1_TestRelease_phenotypic.csv',
 'data/Projects/ADHD200/RawData/Peking_1_phenotypic.csv',
 'data/Projects/ADHD200/RawData/Pittsburgh/Pittsburgh_phenotypic.csv',
 'data/Projects/ADHD200/RawData/Pittsburgh_phenotypic.csv',
 'data/Projects/ADHD200/RawData/WashU/WashU_phenotypic.csv',
 'data/Projects/CORR/RawData/CoRR_AggregatedPhenotypicData.csv',
 'data/Projects/HBNSS/PhenotypicData/cmi_hbnssi_pheno_data.csv',
 'data/Projects/HBNSS/PhenotypicData/cmi_hbnssi_pheno_data_codekey.csv',
 'data/Projects/HBNSSI/PhenotypicData/cmi_hbnssi_pheno_data.csv',
 'data/Projects/HBNSSI/PhenotypicData/cmi_hbnssi_pheno_data_codekey.csv',
 'data/Projects/INDI/HypnosisBarrios/RawData/participants.tsv',
 'data/Projects/INDI/SLIM/swu_slim_phenodata_time1.tsv',
 'data/Projects/INDI/SLIM/swu_slim_phenodata_time2.tsv',
 'data/Projects/INDI/SLIM/swu_slim_phenodata_time3.tsv',
 'data/Projects/RocklandSample/PhenotypicData/nki-rs_lite_r4_phenotypic_v1.csv',
 'data/Projects/RocklandSample/PhenotypicData/nki-rs_lite_r6_phenotypic_v1.csv',
 'data/Projects/RocklandSample/PhenotypicData/nki-rs_lite_r7_phenotypic_v1.csv',
 'data/Projects/RocklandSample/PhenotypicData/nki-rs_lite_r8_phenotypic_v1.csv',
 'data/Projects/RocklandSample/RawDataBIDS/participants.tsv']



In [6]:

    
print(len(pheno))
if not os.path.exists('pheno'):
    os.mkdir('pheno')
localpheno = []
for path in pheno:
    url = bucket_url_prefix + path
    parsed = parse.parse('data/Projects/{project}/{frag}', path).named
    filename = os.path.abspath(os.path.join('pheno', parsed['project'] + '-' + path.split('/')[-1]))
    parsed['url'] = url
    parsed['filename'] = filename
    if not os.path.exists(filename):
        try:
            urllib.request.urlretrieve(url, filename)
            localpheno.append(parsed)
        except urllib.error.HTTPError as e:
            print(url)
    else:
        localpheno.append(parsed)
localpheno









    



62






    Out[6]:





[{'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ABIDE_Initiative-phenotypic_CALTECH.csv',
  'frag': 'PhenotypicData/phenotypic_CALTECH.csv',
  'project': 'ABIDE_Initiative',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_CALTECH.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ABIDE_Initiative-phenotypic_CMU.csv',
  'frag': 'PhenotypicData/phenotypic_CMU.csv',
  'project': 'ABIDE_Initiative',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_CMU.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ABIDE_Initiative-phenotypic_KKI.csv',
  'frag': 'PhenotypicData/phenotypic_KKI.csv',
  'project': 'ABIDE_Initiative',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_KKI.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ABIDE_Initiative-phenotypic_LEUVEN_1.csv',
  'frag': 'PhenotypicData/phenotypic_LEUVEN_1.csv',
  'project': 'ABIDE_Initiative',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_LEUVEN_1.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ABIDE_Initiative-phenotypic_LEUVEN_2.csv',
  'frag': 'PhenotypicData/phenotypic_LEUVEN_2.csv',
  'project': 'ABIDE_Initiative',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_LEUVEN_2.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ABIDE_Initiative-phenotypic_MAX_MUN.csv',
  'frag': 'PhenotypicData/phenotypic_MAX_MUN.csv',
  'project': 'ABIDE_Initiative',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_MAX_MUN.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ABIDE_Initiative-phenotypic_NYU.csv',
  'frag': 'PhenotypicData/phenotypic_NYU.csv',
  'project': 'ABIDE_Initiative',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_NYU.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ABIDE_Initiative-phenotypic_OHSU.csv',
  'frag': 'PhenotypicData/phenotypic_OHSU.csv',
  'project': 'ABIDE_Initiative',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_OHSU.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ABIDE_Initiative-phenotypic_OLIN.csv',
  'frag': 'PhenotypicData/phenotypic_OLIN.csv',
  'project': 'ABIDE_Initiative',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_OLIN.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ABIDE_Initiative-phenotypic_PITT.csv',
  'frag': 'PhenotypicData/phenotypic_PITT.csv',
  'project': 'ABIDE_Initiative',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_PITT.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ABIDE_Initiative-phenotypic_SBL.csv',
  'frag': 'PhenotypicData/phenotypic_SBL.csv',
  'project': 'ABIDE_Initiative',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_SBL.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ABIDE_Initiative-phenotypic_SDSU.csv',
  'frag': 'PhenotypicData/phenotypic_SDSU.csv',
  'project': 'ABIDE_Initiative',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_SDSU.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ABIDE_Initiative-phenotypic_STANFORD.csv',
  'frag': 'PhenotypicData/phenotypic_STANFORD.csv',
  'project': 'ABIDE_Initiative',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_STANFORD.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ABIDE_Initiative-phenotypic_TRINITY(1).csv',
  'frag': 'PhenotypicData/phenotypic_TRINITY(1).csv',
  'project': 'ABIDE_Initiative',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_TRINITY(1).csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ABIDE_Initiative-phenotypic_UCLA_1.csv',
  'frag': 'PhenotypicData/phenotypic_UCLA_1.csv',
  'project': 'ABIDE_Initiative',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_UCLA_1.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ABIDE_Initiative-phenotypic_UCLA_2.csv',
  'frag': 'PhenotypicData/phenotypic_UCLA_2.csv',
  'project': 'ABIDE_Initiative',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_UCLA_2.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ABIDE_Initiative-phenotypic_UM_1.csv',
  'frag': 'PhenotypicData/phenotypic_UM_1.csv',
  'project': 'ABIDE_Initiative',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_UM_1.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ABIDE_Initiative-phenotypic_UM_2.csv',
  'frag': 'PhenotypicData/phenotypic_UM_2.csv',
  'project': 'ABIDE_Initiative',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_UM_2.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ABIDE_Initiative-phenotypic_USM.csv',
  'frag': 'PhenotypicData/phenotypic_USM.csv',
  'project': 'ABIDE_Initiative',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_USM.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ABIDE_Initiative-phenotypic_YALE.csv',
  'frag': 'PhenotypicData/phenotypic_YALE.csv',
  'project': 'ABIDE_Initiative',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_YALE.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ABIDE_Initiative-Phenotypic_V1_0b.csv',
  'frag': 'Phenotypic_V1_0b.csv',
  'project': 'ABIDE_Initiative',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ABIDE_Initiative/Phenotypic_V1_0b.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ABIDE_Initiative-Phenotypic_V1_0b_preprocessed.csv',
  'frag': 'Phenotypic_V1_0b_preprocessed.csv',
  'project': 'ABIDE_Initiative',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ABIDE_Initiative/Phenotypic_V1_0b_preprocessed.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ABIDE_Initiative-Phenotypic_V1_0b_preprocessed1.csv',
  'frag': 'Phenotypic_V1_0b_preprocessed1.csv',
  'project': 'ABIDE_Initiative',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ABIDE_Initiative/Phenotypic_V1_0b_preprocessed1.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ACPI-acpi_aggregated_phenotypic_data.csv',
  'frag': 'PhenotypicData/acpi_aggregated_phenotypic_data.csv',
  'project': 'ACPI',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ACPI/PhenotypicData/acpi_aggregated_phenotypic_data.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ACPI-du_1_phenotypic_data.csv',
  'frag': 'PhenotypicData/du_1_phenotypic_data.csv',
  'project': 'ACPI',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ACPI/PhenotypicData/du_1_phenotypic_data.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ACPI-du_1_phenotypic_key.csv',
  'frag': 'PhenotypicData/du_1_phenotypic_key.csv',
  'project': 'ACPI',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ACPI/PhenotypicData/du_1_phenotypic_key.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ACPI-mta_1_phenotypic_data.csv',
  'frag': 'PhenotypicData/mta_1_phenotypic_data.csv',
  'project': 'ACPI',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ACPI/PhenotypicData/mta_1_phenotypic_data.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ACPI-mta_1_phenotypic_key.docx',
  'frag': 'PhenotypicData/mta_1_phenotypic_key.docx',
  'project': 'ACPI',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ACPI/PhenotypicData/mta_1_phenotypic_key.docx'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ACPI-nyu_1_phenotypic_data.csv',
  'frag': 'PhenotypicData/nyu_1_phenotypic_data.csv',
  'project': 'ACPI',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ACPI/PhenotypicData/nyu_1_phenotypic_data.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ADHD200-Brown_TestRelease_phenotypic.csv',
  'frag': 'RawData/Brown/Brown_TestRelease_phenotypic.csv',
  'project': 'ADHD200',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ADHD200/RawData/Brown/Brown_TestRelease_phenotypic.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ADHD200-Brown_TestRelease_phenotypic.csv',
  'frag': 'RawData/Brown_TestRelease_phenotypic.csv',
  'project': 'ADHD200',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ADHD200/RawData/Brown_TestRelease_phenotypic.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ADHD200-KKI_phenotypic.csv',
  'frag': 'RawData/KKI/KKI_phenotypic.csv',
  'project': 'ADHD200',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ADHD200/RawData/KKI/KKI_phenotypic.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ADHD200-KKI_phenotypic.csv',
  'frag': 'RawData/KKI_phenotypic.csv',
  'project': 'ADHD200',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ADHD200/RawData/KKI_phenotypic.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ADHD200-NYU_TestRelease_phenotypic.csv',
  'frag': 'RawData/NYU/NYU_TestRelease_phenotypic.csv',
  'project': 'ADHD200',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ADHD200/RawData/NYU/NYU_TestRelease_phenotypic.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ADHD200-NYU_phenotypic.csv',
  'frag': 'RawData/NYU/NYU_phenotypic.csv',
  'project': 'ADHD200',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ADHD200/RawData/NYU/NYU_phenotypic.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ADHD200-NYU_phenotypic.csv',
  'frag': 'RawData/NYU_phenotypic.csv',
  'project': 'ADHD200',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ADHD200/RawData/NYU_phenotypic.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ADHD200-NeuroIMAGE_TestRelease_phenotypic.csv',
  'frag': 'RawData/NeuroIMAGE/NeuroIMAGE_TestRelease_phenotypic.csv',
  'project': 'ADHD200',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ADHD200/RawData/NeuroIMAGE/NeuroIMAGE_TestRelease_phenotypic.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ADHD200-NeuroIMAGE_phenotypic.csv',
  'frag': 'RawData/NeuroIMAGE/NeuroIMAGE_phenotypic.csv',
  'project': 'ADHD200',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ADHD200/RawData/NeuroIMAGE/NeuroIMAGE_phenotypic.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ADHD200-NeuroIMAGE_phenotypic.csv',
  'frag': 'RawData/NeuroIMAGE_phenotypic.csv',
  'project': 'ADHD200',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ADHD200/RawData/NeuroIMAGE_phenotypic.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ADHD200-OHSU_TestRelease_phenotypic.csv',
  'frag': 'RawData/OHSU/OHSU_TestRelease_phenotypic.csv',
  'project': 'ADHD200',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ADHD200/RawData/OHSU/OHSU_TestRelease_phenotypic.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ADHD200-OHSU_TestRelease_phenotypic.csv',
  'frag': 'RawData/OHSU_TestRelease_phenotypic.csv',
  'project': 'ADHD200',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ADHD200/RawData/OHSU_TestRelease_phenotypic.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ADHD200-OHSU_phenotypic.csv',
  'frag': 'RawData/OHSU_phenotypic.csv',
  'project': 'ADHD200',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ADHD200/RawData/OHSU_phenotypic.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ADHD200-Peking_1_phenotypic.csv',
  'frag': 'RawData/Peking_1/Peking_1_phenotypic.csv',
  'project': 'ADHD200',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ADHD200/RawData/Peking_1/Peking_1_phenotypic.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ADHD200-Peking_1_TestRelease_phenotypic.csv',
  'frag': 'RawData/Peking_1_TestRelease_phenotypic.csv',
  'project': 'ADHD200',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ADHD200/RawData/Peking_1_TestRelease_phenotypic.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ADHD200-Peking_1_phenotypic.csv',
  'frag': 'RawData/Peking_1_phenotypic.csv',
  'project': 'ADHD200',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ADHD200/RawData/Peking_1_phenotypic.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ADHD200-Pittsburgh_phenotypic.csv',
  'frag': 'RawData/Pittsburgh/Pittsburgh_phenotypic.csv',
  'project': 'ADHD200',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ADHD200/RawData/Pittsburgh/Pittsburgh_phenotypic.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ADHD200-Pittsburgh_phenotypic.csv',
  'frag': 'RawData/Pittsburgh_phenotypic.csv',
  'project': 'ADHD200',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ADHD200/RawData/Pittsburgh_phenotypic.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ADHD200-WashU_phenotypic.csv',
  'frag': 'RawData/WashU/WashU_phenotypic.csv',
  'project': 'ADHD200',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ADHD200/RawData/WashU/WashU_phenotypic.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/CORR-CoRR_AggregatedPhenotypicData.csv',
  'frag': 'RawData/CoRR_AggregatedPhenotypicData.csv',
  'project': 'CORR',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/CORR/RawData/CoRR_AggregatedPhenotypicData.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/HBNSS-cmi_hbnssi_pheno_data.csv',
  'frag': 'PhenotypicData/cmi_hbnssi_pheno_data.csv',
  'project': 'HBNSS',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/HBNSS/PhenotypicData/cmi_hbnssi_pheno_data.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/HBNSS-cmi_hbnssi_pheno_data_codekey.csv',
  'frag': 'PhenotypicData/cmi_hbnssi_pheno_data_codekey.csv',
  'project': 'HBNSS',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/HBNSS/PhenotypicData/cmi_hbnssi_pheno_data_codekey.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/HBNSSI-cmi_hbnssi_pheno_data.csv',
  'frag': 'PhenotypicData/cmi_hbnssi_pheno_data.csv',
  'project': 'HBNSSI',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/HBNSSI/PhenotypicData/cmi_hbnssi_pheno_data.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/HBNSSI-cmi_hbnssi_pheno_data_codekey.csv',
  'frag': 'PhenotypicData/cmi_hbnssi_pheno_data_codekey.csv',
  'project': 'HBNSSI',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/HBNSSI/PhenotypicData/cmi_hbnssi_pheno_data_codekey.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/INDI-participants.tsv',
  'frag': 'HypnosisBarrios/RawData/participants.tsv',
  'project': 'INDI',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/INDI/HypnosisBarrios/RawData/participants.tsv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/INDI-swu_slim_phenodata_time1.tsv',
  'frag': 'SLIM/swu_slim_phenodata_time1.tsv',
  'project': 'INDI',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/INDI/SLIM/swu_slim_phenodata_time1.tsv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/INDI-swu_slim_phenodata_time2.tsv',
  'frag': 'SLIM/swu_slim_phenodata_time2.tsv',
  'project': 'INDI',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/INDI/SLIM/swu_slim_phenodata_time2.tsv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/INDI-swu_slim_phenodata_time3.tsv',
  'frag': 'SLIM/swu_slim_phenodata_time3.tsv',
  'project': 'INDI',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/INDI/SLIM/swu_slim_phenodata_time3.tsv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/RocklandSample-nki-rs_lite_r4_phenotypic_v1.csv',
  'frag': 'PhenotypicData/nki-rs_lite_r4_phenotypic_v1.csv',
  'project': 'RocklandSample',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/RocklandSample/PhenotypicData/nki-rs_lite_r4_phenotypic_v1.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/RocklandSample-nki-rs_lite_r6_phenotypic_v1.csv',
  'frag': 'PhenotypicData/nki-rs_lite_r6_phenotypic_v1.csv',
  'project': 'RocklandSample',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/RocklandSample/PhenotypicData/nki-rs_lite_r6_phenotypic_v1.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/RocklandSample-nki-rs_lite_r7_phenotypic_v1.csv',
  'frag': 'PhenotypicData/nki-rs_lite_r7_phenotypic_v1.csv',
  'project': 'RocklandSample',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/RocklandSample/PhenotypicData/nki-rs_lite_r7_phenotypic_v1.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/RocklandSample-nki-rs_lite_r8_phenotypic_v1.csv',
  'frag': 'PhenotypicData/nki-rs_lite_r8_phenotypic_v1.csv',
  'project': 'RocklandSample',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/RocklandSample/PhenotypicData/nki-rs_lite_r8_phenotypic_v1.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/RocklandSample-participants.tsv',
  'frag': 'RawDataBIDS/participants.tsv',
  'project': 'RocklandSample',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/RocklandSample/RawDataBIDS/participants.tsv'}]



In [7]:

    
with open(info_file, 'rt') as fp:
    anat = [val.strip().split()[-1] for val in fp.readlines() if 
            any([key in val.lower() for key in ['anat', 't1', 'mprage']])
            and all([key not in val.lower() for key in ['tsv.gz', 'cpac_regression_test', 
                                                        'cc_me', 'average', '.ds_store',
                                                        'tar.gz', 'json', 'bold']])]
anat = [val for val in anat if 't1.mgz' in val.lower() or 'output' not in val.lower()]



In [8]:

    
len(anat)









    Out[8]:





10666



In [9]:

    
patterns = ['data/Projects/{study}/RawData/{site}/{subj_id}/session_{session_id}/anat_{anat_id}/mprage.nii.gz',
            'data/Projects/{study}/Outputs/freesurfer/5.1/{site}_{site_suffix}_{subj_id}/mri/T1.mgz',
            'data/Projects/{study}/Outputs/freesurfer/5.1/{site}_{subj_id}/mri/T1.mgz',
            'data/Projects/{study}/surfaces/freesurfer/5.3/{subj_id}/mri/T1.mgz',
            'data/Projects/{study}/Outputs/IBA_TRT/freesurfer_gpu/{subj_id}-session_{session_id}/mri/T1.mgz',
            'data/Projects/{study}/Outputs/IBA_TRT/freesurfer/{subj_id}-session_{session_id}/mri/T1.mgz',
            'data/Projects/{study}/RawData/{site}/{subj_id}/session_{session_id}/anat_{anat_id}/anat.nii.gz',
            'data/Projects/{study:w}/sub-{subj_id}/ses-{session_id}/anat/sub-{subj_id}_ses-{session_id}_T1w.nii.gz',
            'data/Projects/{study:w}/RawData/{subj_id}/{session_id}/{deface_id}/{deface_id2}_defaced.nii.gz',
            'data/Projects/INDI/{study}/RawData/sub-{subj_id}/anat/sub-{subj_id}_T1w.nii.gz',
           ]

info = []
remainder = []
for val in anat:
    got_match = False
    for pattern in patterns:
        parsed = parse.parse(pattern, val)
        if parsed:
            parsed.named['atLocation'] = bucket_url_prefix + val
            parsed.named['pattern'] = pattern
            info.append(parsed.named)
            got_match = True
            break
    if not got_match:
        remainder.append(val)
remainder









    Out[9]:





['data/Projects/ABIDE_BIDS/CMU_a/sub-0050642/anat/sub-0050642_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/CMU_a/sub-0050646/anat/sub-0050646_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/CMU_a/sub-0050647/anat/sub-0050647_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/CMU_a/sub-0050649/anat/sub-0050649_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/CMU_a/sub-0050653/anat/sub-0050653_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/CMU_a/sub-0050654/anat/sub-0050654_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/CMU_a/sub-0050656/anat/sub-0050656_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/CMU_a/sub-0050659/anat/sub-0050659_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/CMU_a/sub-0050660/anat/sub-0050660_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/CMU_a/sub-0050663/anat/sub-0050663_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/CMU_a/sub-0050664/anat/sub-0050664_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/CMU_a/sub-0050665/anat/sub-0050665_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/CMU_a/sub-0050666/anat/sub-0050666_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/CMU_a/sub-0050668/anat/sub-0050668_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/CMU_b/sub-0050643/anat/sub-0050643_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/CMU_b/sub-0050644/anat/sub-0050644_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/CMU_b/sub-0050645/anat/sub-0050645_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/CMU_b/sub-0050648/anat/sub-0050648_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/CMU_b/sub-0050650/anat/sub-0050650_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/CMU_b/sub-0050651/anat/sub-0050651_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/CMU_b/sub-0050652/anat/sub-0050652_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/CMU_b/sub-0050655/anat/sub-0050655_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/CMU_b/sub-0050657/anat/sub-0050657_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/CMU_b/sub-0050658/anat/sub-0050658_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/CMU_b/sub-0050661/anat/sub-0050661_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/CMU_b/sub-0050667/anat/sub-0050667_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/CMU_b/sub-0050669/anat/sub-0050669_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050772/anat/sub-0050772_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050773/anat/sub-0050773_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050774/anat/sub-0050774_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050775/anat/sub-0050775_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050776/anat/sub-0050776_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050777/anat/sub-0050777_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050778/anat/sub-0050778_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050779/anat/sub-0050779_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050780/anat/sub-0050780_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050781/anat/sub-0050781_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050782/anat/sub-0050782_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050783/anat/sub-0050783_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050784/anat/sub-0050784_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050785/anat/sub-0050785_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050786/anat/sub-0050786_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050787/anat/sub-0050787_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050788/anat/sub-0050788_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050789/anat/sub-0050789_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050790/anat/sub-0050790_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050791/anat/sub-0050791_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050792/anat/sub-0050792_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050793/anat/sub-0050793_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050794/anat/sub-0050794_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050795/anat/sub-0050795_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050796/anat/sub-0050796_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050797/anat/sub-0050797_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050798/anat/sub-0050798_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050799/anat/sub-0050799_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050800/anat/sub-0050800_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050801/anat/sub-0050801_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050802/anat/sub-0050802_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050803/anat/sub-0050803_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050804/anat/sub-0050804_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050805/anat/sub-0050805_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050806/anat/sub-0050806_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050807/anat/sub-0050807_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050808/anat/sub-0050808_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050809/anat/sub-0050809_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050810/anat/sub-0050810_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050811/anat/sub-0050811_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050812/anat/sub-0050812_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050813/anat/sub-0050813_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050814/anat/sub-0050814_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050815/anat/sub-0050815_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050816/anat/sub-0050816_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050817/anat/sub-0050817_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050818/anat/sub-0050818_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050819/anat/sub-0050819_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050820/anat/sub-0050820_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050821/anat/sub-0050821_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050822/anat/sub-0050822_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050823/anat/sub-0050823_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050824/anat/sub-0050824_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050825/anat/sub-0050825_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/KKI/sub-0050826/anat/sub-0050826_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_1/sub-0050682/anat/sub-0050682_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_1/sub-0050683/anat/sub-0050683_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_1/sub-0050685/anat/sub-0050685_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_1/sub-0050686/anat/sub-0050686_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_1/sub-0050687/anat/sub-0050687_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_1/sub-0050688/anat/sub-0050688_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_1/sub-0050689/anat/sub-0050689_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_1/sub-0050690/anat/sub-0050690_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_1/sub-0050691/anat/sub-0050691_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_1/sub-0050692/anat/sub-0050692_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_1/sub-0050693/anat/sub-0050693_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_1/sub-0050694/anat/sub-0050694_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_1/sub-0050695/anat/sub-0050695_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_1/sub-0050696/anat/sub-0050696_T1w.nii.gz',
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 'data/Projects/ABIDE_BIDS/Leuven_1/sub-0050698/anat/sub-0050698_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_1/sub-0050699/anat/sub-0050699_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_1/sub-0050700/anat/sub-0050700_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_1/sub-0050701/anat/sub-0050701_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_1/sub-0050702/anat/sub-0050702_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_1/sub-0050703/anat/sub-0050703_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_1/sub-0050704/anat/sub-0050704_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_1/sub-0050705/anat/sub-0050705_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_1/sub-0050706/anat/sub-0050706_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_1/sub-0050707/anat/sub-0050707_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_1/sub-0050708/anat/sub-0050708_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_1/sub-0050709/anat/sub-0050709_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_1/sub-0050710/anat/sub-0050710_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_1/sub-0050711/anat/sub-0050711_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_2/sub-0050722/anat/sub-0050722_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_2/sub-0050723/anat/sub-0050723_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_2/sub-0050724/anat/sub-0050724_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_2/sub-0050725/anat/sub-0050725_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_2/sub-0050726/anat/sub-0050726_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_2/sub-0050727/anat/sub-0050727_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_2/sub-0050728/anat/sub-0050728_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_2/sub-0050730/anat/sub-0050730_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_2/sub-0050731/anat/sub-0050731_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_2/sub-0050732/anat/sub-0050732_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_2/sub-0050733/anat/sub-0050733_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_2/sub-0050734/anat/sub-0050734_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_2/sub-0050735/anat/sub-0050735_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_2/sub-0050736/anat/sub-0050736_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_2/sub-0050737/anat/sub-0050737_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_2/sub-0050738/anat/sub-0050738_T1w.nii.gz',
 'data/Projects/ABIDE_BIDS/Leuven_2/sub-0050739/anat/sub-0050739_T1w.nii.gz',
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 'data/Projects/RocklandSample/RawDataBIDS/sub-A00063327/ses-DSA/anat/sub-A00063327_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00063329/ses-CLGA/anat/sub-A00063329_ses-CLGA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00063368/ses-DSA/anat/sub-A00063368_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00063368/ses-NFB3/anat/sub-A00063368_ses-NFB3_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00063368/ses-NFB3/anat/sub-A00063368_ses-NFB3_T1w_brainmask.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00063368/ses-NFB3/anat/sub-A00063368_ses-NFB3_T1w_skullstripped.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00063383/ses-CLG2R/anat/sub-A00063383_ses-CLG2R_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00063383/ses-CLGA/anat/sub-A00063383_ses-CLGA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00063424/ses-DSA/anat/sub-A00063424_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00063425/ses-DSA/anat/sub-A00063425_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00063450/ses-DSA/anat/sub-A00063450_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00063455/ses-DSA/anat/sub-A00063455_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00063458/ses-DSA/anat/sub-A00063458_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00063470/ses-DSA/anat/sub-A00063470_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00063473/ses-DSA/anat/sub-A00063473_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00063479/ses-DSA/anat/sub-A00063479_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00063481/ses-DSA/anat/sub-A00063481_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00063589/ses-NFB3/anat/sub-A00063589_ses-NFB3_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00063589/ses-NFB3/anat/sub-A00063589_ses-NFB3_T1w_brainmask.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00063589/ses-NFB3/anat/sub-A00063589_ses-NFB3_T1w_skullstripped.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00063589/ses-NFBA/anat/sub-A00063589_ses-NFBA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00064053/ses-DSA/anat/sub-A00064053_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00064061/ses-DSA/anat/sub-A00064061_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00064081/ses-NFB3/anat/sub-A00064081_ses-NFB3_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00064081/ses-NFB3/anat/sub-A00064081_ses-NFB3_T1w_brainmask.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00064081/ses-NFB3/anat/sub-A00064081_ses-NFB3_T1w_skullstripped.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00064081/ses-NFBA/anat/sub-A00064081_ses-NFBA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00064323/ses-DSA/anat/sub-A00064323_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00064328/ses-DSA/anat/sub-A00064328_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00064415/ses-DSA/anat/sub-A00064415_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00064416/ses-DSA/anat/sub-A00064416_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00064418/ses-CLG2R/anat/sub-A00064418_ses-CLG2R_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00064418/ses-DSA/anat/sub-A00064418_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00064503/ses-CLG2R/anat/sub-A00064503_ses-CLG2R_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00064503/ses-CLGA/anat/sub-A00064503_ses-CLGA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00064505/ses-CLG2R/anat/sub-A00064505_ses-CLG2R_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00064505/ses-CLGA/anat/sub-A00064505_ses-CLGA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00064507/ses-CLG2R/anat/sub-A00064507_ses-CLG2R_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00064507/ses-DSA/anat/sub-A00064507_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00064580/ses-DSA/anat/sub-A00064580_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00064580/ses-NFB3/anat/sub-A00064580_ses-NFB3_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00064596/ses-CLG2R/anat/sub-A00064596_ses-CLG2R_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00064596/ses-CLGA/anat/sub-A00064596_ses-CLGA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065178/ses-DSA/anat/sub-A00065178_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065185/ses-DSA/anat/sub-A00065185_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065197/ses-DSA/anat/sub-A00065197_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065250/ses-CLG2R/anat/sub-A00065250_ses-CLG2R_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065250/ses-DSA/anat/sub-A00065250_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065261/ses-CLGA/anat/sub-A00065261_ses-CLGA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065262/ses-CLGA/anat/sub-A00065262_ses-CLGA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065263/ses-DSA/anat/sub-A00065263_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065302/ses-DSA/anat/sub-A00065302_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065379/ses-NFB3/anat/sub-A00065379_ses-NFB3_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065379/ses-NFBA/anat/sub-A00065379_ses-NFBA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065478/ses-DSA/anat/sub-A00065478_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065480/ses-DSA/anat/sub-A00065480_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065480/ses-NFB3/anat/sub-A00065480_ses-NFB3_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065487/ses-DSA/anat/sub-A00065487_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065487/ses-NFB3/anat/sub-A00065487_ses-NFB3_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065565/ses-DSA/anat/sub-A00065565_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065572/ses-DSA/anat/sub-A00065572_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065574/ses-DSA/anat/sub-A00065574_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065574/ses-NFB3/anat/sub-A00065574_ses-NFB3_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065617/ses-NFB3/anat/sub-A00065617_ses-NFB3_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065617/ses-NFBA/anat/sub-A00065617_ses-NFBA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065717/ses-DSA/anat/sub-A00065717_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065722/ses-DSA/anat/sub-A00065722_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065743/ses-ALGA/anat/sub-A00065743_ses-ALGA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065749/ses-DSA/anat/sub-A00065749_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065750/ses-DSA/anat/sub-A00065750_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065790/ses-DSA/anat/sub-A00065790_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065790/ses-NFB3/anat/sub-A00065790_ses-NFB3_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065792/ses-CLG2R/anat/sub-A00065792_ses-CLG2R_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065792/ses-CLGA/anat/sub-A00065792_ses-CLGA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065802/ses-CLG2R/anat/sub-A00065802_ses-CLG2R_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065802/ses-DSA/anat/sub-A00065802_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065820/ses-CLG2R/anat/sub-A00065820_ses-CLG2R_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065820/ses-DSA/anat/sub-A00065820_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065865/ses-DSA/anat/sub-A00065865_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065873/ses-DSA/anat/sub-A00065873_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065934/ses-CLGA/anat/sub-A00065934_ses-CLGA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065935/ses-NFB3/anat/sub-A00065935_ses-NFB3_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065935/ses-NFBA/anat/sub-A00065935_ses-NFBA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065941/ses-CLGA/anat/sub-A00065941_ses-CLGA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065974/ses-DSA/anat/sub-A00065974_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065974/ses-NFB3/anat/sub-A00065974_ses-NFB3_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065991/ses-DSA/anat/sub-A00065991_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065991/ses-NFB3/anat/sub-A00065991_ses-NFB3_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065995/ses-DSA/anat/sub-A00065995_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00065995/ses-NFB3/anat/sub-A00065995_ses-NFB3_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00066013/ses-ALGA/anat/sub-A00066013_ses-ALGA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00066087/ses-NFB3/anat/sub-A00066087_ses-NFB3_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00066087/ses-NFBA/anat/sub-A00066087_ses-NFBA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00066091/ses-NFB3/anat/sub-A00066091_ses-NFB3_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00066091/ses-NFBA/anat/sub-A00066091_ses-NFBA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00066130/ses-DSA/anat/sub-A00066130_ses-DSA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00066153/ses-NFBA/anat/sub-A00066153_ses-NFBA_T1w.nii.gz',
 'data/Projects/RocklandSample/RawDataBIDS/sub-A00066154/ses-DSA/anat/sub-A00066154_ses-DSA_T1w.nii.gz',
 ...]



In [10]:

    
len(remainder), len(info)









    Out[10]:





(1081, 9585)



In [11]:

    
url = 'https://s3.amazonaws.com/fcp-indi/data/Projects/ABIDE_Initiative/RawData/CMU_a/0050642/session_1/anat_1/mprage.nii.gz'
response = urllib.request.urlopen(url)
filedata = response.read()



In [12]:

    
encoded = multihash.encode(filedata, multihash.SHA2_256)
print(''.join(format(x, '02x') for x in encoded))









    



1220d03b3d865c212890578d06c1242406813aae11b9fb8e201b55c282b94bf33687



In [13]:

    
localpheno[:3]









    Out[13]:





[{'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ABIDE_Initiative-phenotypic_CALTECH.csv',
  'frag': 'PhenotypicData/phenotypic_CALTECH.csv',
  'project': 'ABIDE_Initiative',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_CALTECH.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ABIDE_Initiative-phenotypic_CMU.csv',
  'frag': 'PhenotypicData/phenotypic_CMU.csv',
  'project': 'ABIDE_Initiative',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_CMU.csv'},
 {'filename': '/om/user/satra/projects/metasearch/crawler/pheno/ABIDE_Initiative-phenotypic_KKI.csv',
  'frag': 'PhenotypicData/phenotypic_KKI.csv',
  'project': 'ABIDE_Initiative',
  'url': 'https://s3.amazonaws.com/fcp-indi/data/Projects/ABIDE_Initiative/PhenotypicData/phenotypic_KKI.csv'}]



In [14]:

    
df = pd.read_csv(localpheno[0]['filename'])



In [15]:

    
df.DX_GROUP.unique()









    Out[15]:





array([1, 2])



In [16]:

    
info_df = pd.DataFrame(info)



In [17]:

    
info_df.study.unique()









    Out[17]:





array(['ABIDE_Initiative', 'ACPI', 'ADHD200',
       'BrainGenomicsSuperstructProject', 'CORR', 'HypnosisBarrios',
       'RocklandSample'], dtype=object)



In [18]:

    
info_df.head()









    Out[18]:






  
    
      
      anat_id
      atLocation
      deface_id
      deface_id2
      pattern
      session_id
      site
      site_suffix
      study
      subj_id
    
  
  
    
      0
      NaN
      https://s3.amazonaws.com/fcp-indi/data/Project...
      NaN
      NaN
      data/Projects/{study}/Outputs/freesurfer/5.1/{...
      NaN
      CMU
      a
      ABIDE_Initiative
      0050642
    
    
      1
      NaN
      https://s3.amazonaws.com/fcp-indi/data/Project...
      NaN
      NaN
      data/Projects/{study}/Outputs/freesurfer/5.1/{...
      NaN
      CMU
      a
      ABIDE_Initiative
      0050646
    
    
      2
      NaN
      https://s3.amazonaws.com/fcp-indi/data/Project...
      NaN
      NaN
      data/Projects/{study}/Outputs/freesurfer/5.1/{...
      NaN
      CMU
      a
      ABIDE_Initiative
      0050647
    
    
      3
      NaN
      https://s3.amazonaws.com/fcp-indi/data/Project...
      NaN
      NaN
      data/Projects/{study}/Outputs/freesurfer/5.1/{...
      NaN
      CMU
      a
      ABIDE_Initiative
      0050649
    
    
      4
      NaN
      https://s3.amazonaws.com/fcp-indi/data/Project...
      NaN
      NaN
      data/Projects/{study}/Outputs/freesurfer/5.1/{...
      NaN
      CMU
      a
      ABIDE_Initiative
      0050653



In [19]:

    
abide_mri_df = info_df[info_df.study == 'ABIDE_Initiative']



In [20]:

    
abide_mri_df.subj_id.unique().shape == abide_mri_df.subj_id.shape









    Out[20]:





False



In [21]:

    
url_dfs = []
for val in info_df.study.unique():
    print(val, info_df[info_df.study == val].shape, info_df[info_df.study == val].subj_id.unique().shape)
    study_df = info_df[info_df.study == val]
    foo = study_df[['atLocation', 'subj_id']] #, 'session_id']]
    '''
    try:
        subj_id_new = foo.subj_id.apply(lambda x: val.lower() + '_%d' % int(x) )
    except ValueError:
        subj_id_new = foo.subj_id.apply(lambda x: val.lower() + '_' + x)
    foo.loc[:, 'subj_id'] = subj_id_new
    foo.index = subj_id_new.values
    '''
    foo.to_csv(val + '.csv', header=False, index=False, )
    url_dfs.append(foo)









    



ABIDE_Initiative (2214, 10) (1112,)
ACPI (129, 10) (129,)
ADHD200 (1927, 10) (973,)
BrainGenomicsSuperstructProject (1570, 10) (1570,)
CORR (3203, 10) (1520,)
HypnosisBarrios (10, 10) (10,)
RocklandSample (532, 10) (421,)



In [150]:

    
from joblib import Parallel, delayed
import multiprocessing

def applyParallel(df, func):
    retLst = Parallel(n_jobs=multiprocessing.cpu_count())(delayed(func)(url) for url in pd.DataFrame(df).iterrows())
    return pd.concat(retLst)

def compute_hash(url):
    csv_file = os.path.join('hashfiles', url[1].atLocation.replace('https://', '') + '.csv')
    if os.path.exists(csv_file):
        return pd.read_csv(csv_file)
    try:
        response = urllib.request.urlopen(url[1].atLocation)
        filedata = response.read()
    except urllib.error.HTTPError:
        return pd.DataFrame({'multihash': [pd.np.nan]}, index=[url[0]])
    encoded = multihash.encode(filedata, multihash.SHA2_256)
    df = pd.DataFrame({'multihash': [''.join(format(x, '02x') for x in encoded)]}, index=[url[0]])
    df.to_csv(csv_file)
    return df



In [142]:

    
val = list(pd.DataFrame(info_df['atLocation'][:2]).iterrows())[0]
val[1].atLocation

pd.DataFrame({'multihash': [''.join(format(x, 's') for x in val[1].atLocation)]}, index=[1])









    Out[142]:






  
    
      
      multihash
    
  
  
    
      1
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...

hash_df = applyParallel(info_df['atLocation'], compute_hash) hash_df.head()



In [280]:

    
project_pheno = ['data/Projects/ABIDE_Initiative/Phenotypic_V1_0b.csv',
 'data/Projects/ACPI/PhenotypicData/acpi_aggregated_phenotypic_data.csv',
 'data/Projects/ADHD200/RawData/Brown/Brown_TestRelease_phenotypic.csv',
 'data/Projects/ADHD200/RawData/Brown_TestRelease_phenotypic.csv',
 'data/Projects/ADHD200/RawData/KKI/KKI_phenotypic.csv',
 'data/Projects/ADHD200/RawData/KKI_phenotypic.csv',
 'data/Projects/ADHD200/RawData/NYU/NYU_phenotypic.csv',
 'data/Projects/ADHD200/RawData/NYU_phenotypic.csv',
 'data/Projects/ADHD200/RawData/NeuroIMAGE/NeuroIMAGE_TestRelease_phenotypic.csv',
 'data/Projects/ADHD200/RawData/NeuroIMAGE/NeuroIMAGE_phenotypic.csv',
 'data/Projects/ADHD200/RawData/NeuroIMAGE_phenotypic.csv',
 'data/Projects/ADHD200/RawData/OHSU/OHSU_TestRelease_phenotypic.csv',
 'data/Projects/ADHD200/RawData/OHSU_TestRelease_phenotypic.csv',
 'data/Projects/ADHD200/RawData/OHSU_phenotypic.csv',
 'data/Projects/ADHD200/RawData/Peking_1/Peking_1_phenotypic.csv',
 'data/Projects/ADHD200/RawData/Peking_1_TestRelease_phenotypic.csv',
 'data/Projects/ADHD200/RawData/Peking_1_phenotypic.csv',
 'data/Projects/ADHD200/RawData/Pittsburgh/Pittsburgh_phenotypic.csv',
 'data/Projects/ADHD200/RawData/Pittsburgh_phenotypic.csv',
 'data/Projects/ADHD200/RawData/WashU/WashU_phenotypic.csv',
 'data/Projects/CORR/RawData/CoRR_AggregatedPhenotypicData.csv',
 'data/Projects/INDI/HypnosisBarrios/RawData/participants.tsv',
 'data/Projects/RocklandSample/PhenotypicData/nki-rs_lite_r6_phenotypic_v1.csv',
 'data/Projects/RocklandSample/PhenotypicData/nki-rs_lite_r7_phenotypic_v1.csv',
 'data/Projects/RocklandSample/PhenotypicData/nki-rs_lite_r8_phenotypic_v1.csv',
 'data/Projects/RocklandSample/RawDataBIDS/participants.tsv']



In [281]:

    
csv2use = [val2 for val2 in localpheno for val in project_pheno if val in val2['url']]



In [282]:

    
csv2use[0]









    Out[282]:





{'filename': '/software/data/brainbox/pheno/ABIDE_Initiative-Phenotypic_V1_0b.csv',
 'frag': 'Phenotypic_V1_0b.csv',
 'project': 'ABIDE_Initiative',
 'url': 'https://s3.amazonaws.com/fcp-indi-new/data/Projects/ABIDE_Initiative/Phenotypic_V1_0b.csv'}



In [283]:

    
data_dfs = []
for val in csv2use:
    print(val['filename'])
    if 'csv' in val['filename']:
        df = pd.read_csv(val['filename'], na_values=['-9999'], dtype=object)
    else:
        df = pd.read_table(val['filename'], na_values=['-9999'], dtype=object)
    df['Project'] = val['project']
    data_dfs.append(df)









    



/software/data/brainbox/pheno/ABIDE_Initiative-Phenotypic_V1_0b.csv
/software/data/brainbox/pheno/ACPI-acpi_aggregated_phenotypic_data.csv
/software/data/brainbox/pheno/ADHD200-Brown_TestRelease_phenotypic.csv
/software/data/brainbox/pheno/ADHD200-Brown_TestRelease_phenotypic.csv
/software/data/brainbox/pheno/ADHD200-KKI_phenotypic.csv
/software/data/brainbox/pheno/ADHD200-KKI_phenotypic.csv
/software/data/brainbox/pheno/ADHD200-NYU_phenotypic.csv
/software/data/brainbox/pheno/ADHD200-NYU_phenotypic.csv
/software/data/brainbox/pheno/ADHD200-NeuroIMAGE_TestRelease_phenotypic.csv
/software/data/brainbox/pheno/ADHD200-NeuroIMAGE_phenotypic.csv
/software/data/brainbox/pheno/ADHD200-NeuroIMAGE_phenotypic.csv
/software/data/brainbox/pheno/ADHD200-OHSU_TestRelease_phenotypic.csv
/software/data/brainbox/pheno/ADHD200-OHSU_TestRelease_phenotypic.csv
/software/data/brainbox/pheno/ADHD200-OHSU_phenotypic.csv
/software/data/brainbox/pheno/ADHD200-Peking_1_phenotypic.csv
/software/data/brainbox/pheno/ADHD200-Peking_1_TestRelease_phenotypic.csv
/software/data/brainbox/pheno/ADHD200-Peking_1_phenotypic.csv
/software/data/brainbox/pheno/ADHD200-Pittsburgh_phenotypic.csv
/software/data/brainbox/pheno/ADHD200-Pittsburgh_phenotypic.csv
/software/data/brainbox/pheno/ADHD200-WashU_phenotypic.csv
/software/data/brainbox/pheno/CORR-CoRR_AggregatedPhenotypicData.csv
/software/data/brainbox/pheno/INDI-participants.tsv
/software/data/brainbox/pheno/RocklandSample-nki-rs_lite_r6_phenotypic_v1.csv
/software/data/brainbox/pheno/RocklandSample-nki-rs_lite_r7_phenotypic_v1.csv
/software/data/brainbox/pheno/RocklandSample-nki-rs_lite_r8_phenotypic_v1.csv
/software/data/brainbox/pheno/RocklandSample-participants.tsv



In [284]:

    
for val in data_dfs:
    print(val.Project.unique())









    



['ABIDE_Initiative']
['ACPI']
['ADHD200']
['ADHD200']
['ADHD200']
['ADHD200']
['ADHD200']
['ADHD200']
['ADHD200']
['ADHD200']
['ADHD200']
['ADHD200']
['ADHD200']
['ADHD200']
['ADHD200']
['ADHD200']
['ADHD200']
['ADHD200']
['ADHD200']
['ADHD200']
['CORR']
['INDI']
['RocklandSample']
['RocklandSample']
['RocklandSample']
['RocklandSample']



In [285]:

    
pheno_df = pd.concat(data_dfs, axis=0, ignore_index=True).drop_duplicates()
pheno_df.index = range(pheno_df.shape[0])
pheno_df.keys().tolist()









    Out[285]:





['ADHD Index',
 'ADHD Measure',
 'ADI_RRB_TOTAL_C',
 'ADI_R_ONSET_TOTAL_D',
 'ADI_R_RSRCH_RELIABLE',
 'ADI_R_SOCIAL_TOTAL_A',
 'ADI_R_VERBAL_TOTAL_BV',
 'ADOS_COMM',
 'ADOS_GOTHAM_RRB',
 'ADOS_GOTHAM_SEVERITY',
 'ADOS_GOTHAM_SOCAFFECT',
 'ADOS_GOTHAM_TOTAL',
 'ADOS_MODULE',
 'ADOS_RSRCH_RELIABLE',
 'ADOS_SOCIAL',
 'ADOS_STEREO_BEHAV',
 'ADOS_TOTAL',
 'AGE_AT_MPRAGE',
 'AGE_AT_SCAN',
 'AGE_AT_SCAN_1',
 'AQ_TOTAL',
 'Age',
 'BMI',
 'COMORBIDITY',
 'CURRENT_MED_STATUS',
 'DATASET',
 'DSM_IV_TR',
 'DX',
 'DX_GROUP',
 'Disclaimer',
 'Dominant Hand',
 'Download Group',
 'EYE_STATUS_AT_SCAN',
 'FILE_ID',
 'FIQ',
 'FIQ_TEST_TYPE',
 'Full2 IQ',
 'Full4 IQ',
 'Gender',
 'HANDEDNESS',
 'HANDEDNESS_CATEGORY',
 'HANDEDNESS_SCORES',
 'Handedness',
 'Hyper/Impulsive',
 'ID',
 'IQ Measure',
 'Inattentive',
 'LMP',
 'MEDICATION_NAME',
 'Med Status',
 'OFF_STIMULANTS_AT_SCAN',
 'PIQ',
 'PIQ_TEST_TYPE',
 'PRECEDING_CONDITION',
 'Performance IQ',
 'Project',
 'QC_Anatomical_1',
 'QC_Anatomical_2',
 'QC_Rest_1',
 'QC_Rest_2',
 'QC_Rest_3',
 'QC_Rest_4',
 'QC_S1_Anat',
 'QC_S1_Rest_1',
 'QC_S1_Rest_2',
 'QC_S1_Rest_3',
 'QC_S1_Rest_4',
 'QC_S1_Rest_5',
 'QC_S1_Rest_6',
 'QC_S2_Anat',
 'QC_S2_Rest_1',
 'QC_S2_Rest_2',
 'RESTING_STATE_INSTRUCTION',
 'RETEST_DESIGN',
 'RETEST_DURATION',
 'RETEST_UNITS',
 'SCQ_TOTAL',
 'SEASON',
 'SESSION',
 'SEX',
 'SITE',
 'SITE_ID',
 'SRS_AWARENESS',
 'SRS_COGNITION',
 'SRS_COMMUNICATION',
 'SRS_MANNERISMS',
 'SRS_MOTIVATION',
 'SRS_RAW_TOTAL',
 'SRS_VERSION',
 'SUBID',
 'SUB_ID',
 'ScanDir ID',
 'ScanDirID',
 'Secondary Dx ',
 'Sex',
 'Site',
 'Subject ID',
 'TIME_OF_DAY',
 'VINELAND_ABC_STANDARD',
 'VINELAND_COMMUNICATION_STANDARD',
 'VINELAND_COMMUNITY_V_SCALED',
 'VINELAND_COPING_V_SCALED',
 'VINELAND_DAILYLVNG_STANDARD',
 'VINELAND_DOMESTIC_V_SCALED',
 'VINELAND_EXPRESSIVE_V_SCALED',
 'VINELAND_INFORMANT',
 'VINELAND_INTERPERSONAL_V_SCALED',
 'VINELAND_PERSONAL_V_SCALED',
 'VINELAND_PLAY_V_SCALED',
 'VINELAND_RECEPTIVE_V_SCALED',
 'VINELAND_SOCIAL_STANDARD',
 'VINELAND_SUM_SCORES',
 'VINELAND_WRITTEN_V_SCALED',
 'VIQ',
 'VIQ_TEST_TYPE',
 'VISUAL_STIMULATION_CONDITION',
 'Verbal IQ',
 'Visit',
 'WISC_IV_BLK_DSN_SCALED',
 'WISC_IV_CODING_SCALED',
 'WISC_IV_DIGIT_SPAN_SCALED',
 'WISC_IV_INFO_SCALED',
 'WISC_IV_LET_NUM_SCALED',
 'WISC_IV_MATRIX_SCALED',
 'WISC_IV_PIC_CON_SCALED',
 'WISC_IV_PRI',
 'WISC_IV_PSI',
 'WISC_IV_SIM_SCALED',
 'WISC_IV_SYM_SCALED',
 'WISC_IV_VCI',
 'WISC_IV_VOCAB_SCALED',
 'WISC_IV_WMI',
 'age',
 'handedness',
 'participant_id',
 'sex']



In [286]:

    
id_cols = [val for val in pheno_df.keys().tolist() if val.lower().endswith('id') and 
           all([key not in val.lower() for key in ['site', 'file']])]
id_cols









    Out[286]:





['ID',
 'SUBID',
 'SUB_ID',
 'ScanDir ID',
 'ScanDirID',
 'Subject ID',
 'participant_id']



In [287]:

    
pheno_df[id_cols].apply(lambda x: len([val for val in x if isinstance(val, str) or not pd.np.isnan(val)]), axis=1).unique()









    Out[287]:





array([1])



In [288]:

    
ids = []
for row in pheno_df[id_cols].iterrows():
    id = [val for val in row[1] if isinstance(val, str) or not pd.np.isnan(val)]
    id = id[0] if id else None
    if id:
        if isinstance(id, float):
            id = '%d' % id
    ids.append(pheno_df.iloc[row[0]]['Project'].lower() + '_' + id)



In [289]:

    
pheno_df.index = ids



In [305]:

    
pheno_df









    Out[305]:






  
    
      
      ADHD Index
      ADHD Measure
      ADI_RRB_TOTAL_C
      ADI_R_ONSET_TOTAL_D
      ADI_R_RSRCH_RELIABLE
      ADI_R_SOCIAL_TOTAL_A
      ADI_R_VERBAL_TOTAL_BV
      ADOS_COMM
      ADOS_GOTHAM_RRB
      ADOS_GOTHAM_SEVERITY
      ...
      WISC_IV_PSI
      WISC_IV_SIM_SCALED
      WISC_IV_SYM_SCALED
      WISC_IV_VCI
      WISC_IV_VOCAB_SCALED
      WISC_IV_WMI
      age
      handedness
      participant_id
      sex
    
  
  
    
      abide_initiative_51456
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      2
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
    
    
      abide_initiative_51457
      NaN
      NaN
      5
      3
      1
      23
      17
      3
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
    
    
      abide_initiative_51458
      NaN
      NaN
      7
      4
      1
      13
      18
      6
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
    
    
      abide_initiative_51459
      NaN
      NaN
      2
      1
      1
      12
      12
      4
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
    
    
      abide_initiative_51460
      NaN
      NaN
      6
      3
      1
      21
      11
      4
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
    
    
      abide_initiative_51461
      NaN
      NaN
      5
      3
      1
      25
      15
      3
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
    
    
      abide_initiative_51462
      NaN
      NaN
      3
      3
      1
      25
      18
      7
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
    
    
      abide_initiative_51463
      NaN
      NaN
      4
      3
      1
      24
      18
      7
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
    
    
      abide_initiative_51464
      NaN
      NaN
      5
      5
      1
      22
      17
      5
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
    
    
      abide_initiative_51465
      NaN
      NaN
      9
      NaN
      1
      23
      18
      5
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
    
    
      abide_initiative_51466
      NaN
      NaN
      7
      3
      1
      21
      20
      6
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
    
    
      abide_initiative_51467
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      3
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
    
    
      abide_initiative_51468
      NaN
      NaN
      2
      1
      1
      18
      12
      4
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
    
    
      abide_initiative_51469
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      2
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
    
    
      abide_initiative_51470
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      3
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
    
    
      abide_initiative_51471
      NaN
      NaN
      5
      0
      1
      14
      12
      3
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
    
    
      abide_initiative_51472
      NaN
      NaN
      8
      3
      1
      28
      22
      3
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
    
    
      abide_initiative_51473
      NaN
      NaN
      12
      3
      1
      25
      24
      7
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
    
    
      abide_initiative_51474
      NaN
      NaN
      6
      4
      1
      26
      21
      6
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
    
    
      abide_initiative_51475
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
    
    
      abide_initiative_51476
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
    
    
      abide_initiative_51477
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
    
    
      abide_initiative_51478
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
    
    
      abide_initiative_51479
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
    
    
      abide_initiative_51480
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
    
    
      abide_initiative_51481
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
    
    
      abide_initiative_51482
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
    
    
      abide_initiative_51483
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
    
    
      abide_initiative_51484
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
    
    
      abide_initiative_51485
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
    
    
      ...
      ...
      ...
      ...
      ...
      ...
      ...
      ...
      ...
      ...
      ...
      ...
      ...
      ...
      ...
      ...
      ...
      ...
      ...
      ...
      ...
      ...
    
    
      rocklandsample_A00061728
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      66.0
      R
      A00061728
      F
    
    
      rocklandsample_A00064323
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      65.0
      R
      A00064323
      M
    
    
      rocklandsample_A00064061
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      74.0
      R
      A00064061
      F
    
    
      rocklandsample_A00073705
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      78.0
      R
      A00073705
      F
    
    
      rocklandsample_A00066000
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      n/a
      n/a
      A00066000
      n/a
    
    
      rocklandsample_A00065974
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      44.0
      R
      A00065974
      F
    
    
      rocklandsample_A00066827
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      26.0
      R
      A00066827
      F
    
    
      rocklandsample_A00066087
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      22.0
      R
      A00066087
      M
    
    
      rocklandsample_A00060582
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      22.0
      L
      A00060582
      F
    
    
      rocklandsample_A00065617
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      23.0
      R
      A00065617
      M
    
    
      rocklandsample_A00065935
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      42.0
      R
      A00065935
      F
    
    
      rocklandsample_A00072203
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      23.0
      R
      A00072203
      F
    
    
      rocklandsample_A00066822
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      26.0
      R
      A00066822
      F
    
    
      rocklandsample_A00066236
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      33.0
      R
      A00066236
      M
    
    
      rocklandsample_A00073600
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      22.0
      R
      A00073600
      F
    
    
      rocklandsample_A00060773
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      23.0
      R
      A00060773
      F
    
    
      rocklandsample_A00066812
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      23.0
      R
      A00066812
      M
    
    
      rocklandsample_A00066926
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      23.0
      R
      A00066926
      M
    
    
      rocklandsample_A00065379
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      42.0
      R
      A00065379
      M
    
    
      rocklandsample_A00066091
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      22.0
      R
      A00066091
      M
    
    
      rocklandsample_A00066781
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      27.0
      R
      A00066781
      M
    
    
      rocklandsample_A00060662
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      26.0
      R
      A00060662
      M
    
    
      rocklandsample_A00066865
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      36.0
      R
      A00066865
      F
    
    
      rocklandsample_A00066153
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      21.0
      R
      A00066153
      M
    
    
      rocklandsample_A00074000
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      30.0
      L
      A00074000
      M
    
    
      rocklandsample_A00073330
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      n/a
      n/a
      A00073330
      n/a
    
    
      rocklandsample_A00065565
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      84.0
      R
      A00065565
      M
    
    
      rocklandsample_A00063003
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      13.0
      R
      A00063003
      M
    
    
      rocklandsample_A00039943
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      15.0
      R
      A00039943
      M
    
    
      rocklandsample_A00055612
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      ...
      NaN
      NaN
      NaN
      NaN
      NaN
      NaN
      8.0
      L
      A00055612
      F
    
  

7098 rows × 136 columns



In [303]:

    
url_df = pd.concat(url_dfs)
url_df









    Out[303]:






  
    
      
      atLocation
      subj_id
    
  
  
    
      abide_initiative_50642
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      abide_initiative_50642
    
    
      abide_initiative_50646
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      abide_initiative_50646
    
    
      abide_initiative_50647
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      abide_initiative_50647
    
    
      abide_initiative_50649
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      abide_initiative_50649
    
    
      abide_initiative_50653
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      abide_initiative_50653
    
    
      abide_initiative_50654
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      abide_initiative_50654
    
    
      abide_initiative_50656
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      abide_initiative_50656
    
    
      abide_initiative_50659
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      abide_initiative_50659
    
    
      abide_initiative_50660
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      abide_initiative_50660
    
    
      abide_initiative_50663
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      abide_initiative_50663
    
    
      abide_initiative_50664
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      abide_initiative_50664
    
    
      abide_initiative_50665
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      abide_initiative_50665
    
    
      abide_initiative_50666
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      abide_initiative_50666
    
    
      abide_initiative_50668
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      abide_initiative_50668
    
    
      abide_initiative_50643
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      abide_initiative_50643
    
    
      abide_initiative_50644
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      abide_initiative_50644
    
    
      abide_initiative_50645
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      abide_initiative_50645
    
    
      abide_initiative_50648
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      abide_initiative_50648
    
    
      abide_initiative_50650
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      abide_initiative_50650
    
    
      abide_initiative_50651
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      abide_initiative_50651
    
    
      abide_initiative_50652
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      abide_initiative_50652
    
    
      abide_initiative_50655
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      abide_initiative_50655
    
    
      abide_initiative_50657
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      abide_initiative_50657
    
    
      abide_initiative_50658
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      abide_initiative_50658
    
    
      abide_initiative_50661
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      abide_initiative_50661
    
    
      abide_initiative_50667
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      abide_initiative_50667
    
    
      abide_initiative_50669
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      abide_initiative_50669
    
    
      abide_initiative_51456
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      abide_initiative_51456
    
    
      abide_initiative_51457
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      abide_initiative_51457
    
    
      abide_initiative_51458
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      abide_initiative_51458
    
    
      ...
      ...
      ...
    
    
      rocklandsample_A00057035
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      rocklandsample_A00057035
    
    
      rocklandsample_A00057182
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      rocklandsample_A00057182
    
    
      rocklandsample_A00057203
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      rocklandsample_A00057203
    
    
      rocklandsample_A00057235
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      rocklandsample_A00057235
    
    
      rocklandsample_A00057372
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      rocklandsample_A00057372
    
    
      rocklandsample_A00057444
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      rocklandsample_A00057444
    
    
      rocklandsample_A00057786
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      rocklandsample_A00057786
    
    
      rocklandsample_A00057808
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      rocklandsample_A00057808
    
    
      rocklandsample_A00057965
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      rocklandsample_A00057965
    
    
      rocklandsample_A00058214
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      rocklandsample_A00058214
    
    
      rocklandsample_A00058218
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      rocklandsample_A00058218
    
    
      rocklandsample_A00058503
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      rocklandsample_A00058503
    
    
      rocklandsample_A00058552
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      rocklandsample_A00058552
    
    
      rocklandsample_A00058667
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      rocklandsample_A00058667
    
    
      rocklandsample_A00058952
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      rocklandsample_A00058952
    
    
      rocklandsample_A00058999
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      rocklandsample_A00058999
    
    
      rocklandsample_A00059344
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      rocklandsample_A00059344
    
    
      rocklandsample_A00059346
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      rocklandsample_A00059346
    
    
      rocklandsample_A00059428
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      rocklandsample_A00059428
    
    
      rocklandsample_A00059756
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      rocklandsample_A00059756
    
    
      rocklandsample_A00059845
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      rocklandsample_A00059845
    
    
      rocklandsample_A00059911
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      rocklandsample_A00059911
    
    
      rocklandsample_A00060006
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      rocklandsample_A00060006
    
    
      rocklandsample_A00060169
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      rocklandsample_A00060169
    
    
      rocklandsample_A00060279
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      rocklandsample_A00060279
    
    
      rocklandsample_A00060372
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      rocklandsample_A00060372
    
    
      rocklandsample_A00060430
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      rocklandsample_A00060430
    
    
      rocklandsample_A00060471
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      rocklandsample_A00060471
    
    
      rocklandsample_A00060480
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      rocklandsample_A00060480
    
    
      rocklandsample_A00060516
      https://s3.amazonaws.com/fcp-indi-new/data/Pro...
      rocklandsample_A00060516
    
  

5796 rows × 2 columns



In [308]:

    
merged_df = pd.merge(pheno_df, url_df, left_index=True, right_index=True)



In [314]:

    
pheno_df.drop_duplicates().shape, url_df.drop_duplicates().shape









    Out[314]:





((7098, 136), (5796, 2))



In [5]:

    
df = pd.read_csv('https://s3.amazonaws.com/fcp-indi-new/data/Projects/ABIDE_Initiative/Phenotypic_V1_0b.csv')



In [9]:

    
df
sub = df[['SITE_ID', 'SUB_ID', 'DX_GROUP', 'DSM_IV_TR', 'AGE_AT_SCAN', 'SEX', 'HANDEDNESS_CATEGORY', 'FIQ']]



In [19]:

    
sub









    Out[19]:






  
    
      
      SITE_ID
      SUB_ID
      DX_GROUP
      DSM_IV_TR
      AGE_AT_SCAN
      SEX
      HANDEDNESS_CATEGORY
      FIQ
    
  
  
    
      0
      CALTECH
      51456
      1
      4
      55.40
      1
      R
      126.0
    
    
      1
      CALTECH
      51457
      1
      4
      22.90
      1
      Ambi
      107.0
    
    
      2
      CALTECH
      51458
      1
      1
      39.20
      1
      R
      93.0
    
    
      3
      CALTECH
      51459
      1
      1
      22.80
      1
      R
      106.0
    
    
      4
      CALTECH
      51460
      1
      1
      34.60
      2
      Ambi
      133.0
    
    
      5
      CALTECH
      51461
      1
      4
      37.70
      1
      R
      99.0
    
    
      6
      CALTECH
      51462
      1
      1
      20.20
      2
      R
      107.0
    
    
      7
      CALTECH
      51463
      1
      1
      20.20
      2
      R
      102.0
    
    
      8
      CALTECH
      51464
      1
      1
      20.90
      1
      Ambi
      101.0
    
    
      9
      CALTECH
      51465
      1
      1
      20.20
      1
      R
      96.0
    
    
      10
      CALTECH
      51466
      1
      1
      27.60
      1
      Ambi
      106.0
    
    
      11
      CALTECH
      51467
      1
      1
      23.40
      1
      R
      93.0
    
    
      12
      CALTECH
      51468
      1
      1
      20.10
      1
      R
      100.0
    
    
      13
      CALTECH
      51469
      1
      4
      45.10
      1
      R
      104.0
    
    
      14
      CALTECH
      51470
      1
      4
      29.10
      1
      R
      124.0
    
    
      15
      CALTECH
      51471
      1
      4
      22.40
      2
      R
      125.0
    
    
      16
      CALTECH
      51472
      1
      1
      17.50
      1
      Ambi
      125.0
    
    
      17
      CALTECH
      51473
      1
      1
      21.20
      1
      R
      -9999.0
    
    
      18
      CALTECH
      51474
      1
      1
      20.90
      1
      R
      100.0
    
    
      19
      CALTECH
      51475
      2
      0
      44.20
      1
      R
      104.0
    
    
      20
      CALTECH
      51476
      2
      0
      39.30
      1
      R
      123.0
    
    
      21
      CALTECH
      51477
      2
      0
      42.50
      1
      R
      97.0
    
    
      22
      CALTECH
      51478
      2
      0
      19.70
      1
      R
      116.0
    
    
      23
      CALTECH
      51479
      2
      0
      20.00
      2
      R
      111.0
    
    
      24
      CALTECH
      51480
      2
      0
      20.80
      2
      R
      112.0
    
    
      25
      CALTECH
      51481
      2
      0
      27.90
      1
      R
      117.0
    
    
      26
      CALTECH
      51482
      2
      0
      21.10
      2
      R
      103.0
    
    
      27
      CALTECH
      51483
      2
      0
      20.90
      1
      Ambi
      124.0
    
    
      28
      CALTECH
      51484
      2
      0
      23.60
      1
      R
      128.0
    
    
      29
      CALTECH
      51485
      2
      0
      23.90
      1
      R
      123.0
    
    
      ...
      ...
      ...
      ...
      ...
      ...
      ...
      ...
      ...
    
    
      1082
      YALE
      50577
      2
      0
      15.25
      1
      R
      73.0
    
    
      1083
      YALE
      50578
      2
      0
      12.33
      1
      L
      104.0
    
    
      1084
      YALE
      50601
      1
      3
      14.33
      1
      L
      102.0
    
    
      1085
      YALE
      50602
      1
      2
      10.00
      1
      R
      108.0
    
    
      1086
      YALE
      50603
      1
      1
      13.25
      1
      L
      76.0
    
    
      1087
      YALE
      50604
      1
      1
      14.42
      2
      R
      85.0
    
    
      1088
      YALE
      50605
      1
      1
      16.00
      1
      R
      121.0
    
    
      1089
      YALE
      50606
      1
      3
      16.42
      1
      R
      41.0
    
    
      1090
      YALE
      50607
      1
      2
      17.17
      1
      R
      141.0
    
    
      1091
      YALE
      50608
      1
      3
      16.58
      1
      R
      100.0
    
    
      1092
      YALE
      50609
      1
      2
      8.92
      1
      R
      114.0
    
    
      1093
      YALE
      50610
      1
      2
      13.00
      1
      R
      95.0
    
    
      1094
      YALE
      50611
      1
      3
      11.92
      1
      R
      86.0
    
    
      1095
      YALE
      50612
      1
      2
      11.83
      1
      R
      121.0
    
    
      1096
      YALE
      50613
      1
      2
      12.50
      1
      L
      131.0
    
    
      1097
      YALE
      50614
      1
      1
      17.75
      1
      R
      72.0
    
    
      1098
      YALE
      50615
      1
      2
      8.58
      2
      R
      119.0
    
    
      1099
      YALE
      50616
      1
      3
      11.83
      1
      R
      93.0
    
    
      1100
      YALE
      50617
      1
      3
      7.25
      1
      R
      84.0
    
    
      1101
      YALE
      50618
      1
      1
      12.75
      1
      L
      76.0
    
    
      1102
      YALE
      50619
      1
      1
      16.50
      2
      R
      88.0
    
    
      1103
      YALE
      50620
      1
      3
      12.75
      2
      R
      114.0
    
    
      1104
      YALE
      50621
      1
      2
      16.58
      2
      R
      83.0
    
    
      1105
      YALE
      50622
      1
      3
      9.92
      1
      R
      89.0
    
    
      1106
      YALE
      50623
      1
      3
      13.66
      2
      R
      94.0
    
    
      1107
      YALE
      50624
      1
      3
      11.08
      2
      R
      90.0
    
    
      1108
      YALE
      50625
      1
      3
      7.00
      1
      L
      99.0
    
    
      1109
      YALE
      50626
      1
      3
      11.08
      1
      L
      61.0
    
    
      1110
      YALE
      50627
      1
      3
      9.50
      2
      R
      88.0
    
    
      1111
      YALE
      50628
      1
      3
      14.42
      1
      R
      77.0
    
  

1112 rows × 8 columns



In [ ]:

	anat_id	atLocation	deface_id	deface_id2	pattern	session_id	site	site_suffix	study	subj_id
0	NaN	https://s3.amazonaws.com/fcp-indi/data/Project...	NaN	NaN	data/Projects/{study}/Outputs/freesurfer/5.1/{...	NaN	CMU	a	ABIDE_Initiative	0050642
1	NaN	https://s3.amazonaws.com/fcp-indi/data/Project...	NaN	NaN	data/Projects/{study}/Outputs/freesurfer/5.1/{...	NaN	CMU	a	ABIDE_Initiative	0050646
2	NaN	https://s3.amazonaws.com/fcp-indi/data/Project...	NaN	NaN	data/Projects/{study}/Outputs/freesurfer/5.1/{...	NaN	CMU	a	ABIDE_Initiative	0050647
3	NaN	https://s3.amazonaws.com/fcp-indi/data/Project...	NaN	NaN	data/Projects/{study}/Outputs/freesurfer/5.1/{...	NaN	CMU	a	ABIDE_Initiative	0050649
4	NaN	https://s3.amazonaws.com/fcp-indi/data/Project...	NaN	NaN	data/Projects/{study}/Outputs/freesurfer/5.1/{...	NaN	CMU	a	ABIDE_Initiative	0050653

	ADHD Index	ADHD Measure	ADI_RRB_TOTAL_C	ADI_R_ONSET_TOTAL_D	ADI_R_RSRCH_RELIABLE	ADI_R_SOCIAL_TOTAL_A	ADI_R_VERBAL_TOTAL_BV	ADOS_COMM	ADOS_GOTHAM_RRB	ADOS_GOTHAM_SEVERITY	...	WISC_IV_PSI	WISC_IV_SIM_SCALED	WISC_IV_SYM_SCALED	WISC_IV_VCI	WISC_IV_VOCAB_SCALED	WISC_IV_WMI	age	handedness	participant_id	sex
abide_initiative_51456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
abide_initiative_51457	NaN	NaN	5	3	1	23	17	3	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
abide_initiative_51458	NaN	NaN	7	4	1	13	18	6	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
abide_initiative_51459	NaN	NaN	2	1	1	12	12	4	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
abide_initiative_51460	NaN	NaN	6	3	1	21	11	4	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
abide_initiative_51461	NaN	NaN	5	3	1	25	15	3	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
abide_initiative_51462	NaN	NaN	3	3	1	25	18	7	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
abide_initiative_51463	NaN	NaN	4	3	1	24	18	7	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
abide_initiative_51464	NaN	NaN	5	5	1	22	17	5	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
abide_initiative_51465	NaN	NaN	9	NaN	1	23	18	5	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
abide_initiative_51466	NaN	NaN	7	3	1	21	20	6	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
abide_initiative_51467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
abide_initiative_51468	NaN	NaN	2	1	1	18	12	4	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
abide_initiative_51469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
abide_initiative_51470	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
abide_initiative_51471	NaN	NaN	5	0	1	14	12	3	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
abide_initiative_51472	NaN	NaN	8	3	1	28	22	3	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
abide_initiative_51473	NaN	NaN	12	3	1	25	24	7	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
abide_initiative_51474	NaN	NaN	6	4	1	26	21	6	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
abide_initiative_51475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
abide_initiative_51476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
abide_initiative_51477	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
abide_initiative_51478	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
abide_initiative_51479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
abide_initiative_51480	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
abide_initiative_51481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
abide_initiative_51482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
abide_initiative_51483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
abide_initiative_51484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
abide_initiative_51485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
...	...	...	...	...	...	...	...	...	...	...	...	...	...	...	...	...	...	...	...	...	...
rocklandsample_A00061728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	66.0	R	A00061728	F
rocklandsample_A00064323	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	65.0	R	A00064323	M
rocklandsample_A00064061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	74.0	R	A00064061	F
rocklandsample_A00073705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	78.0	R	A00073705	F
rocklandsample_A00066000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	n/a	n/a	A00066000	n/a
rocklandsample_A00065974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	44.0	R	A00065974	F
rocklandsample_A00066827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	26.0	R	A00066827	F
rocklandsample_A00066087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	22.0	R	A00066087	M
rocklandsample_A00060582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	22.0	L	A00060582	F
rocklandsample_A00065617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	23.0	R	A00065617	M
rocklandsample_A00065935	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	42.0	R	A00065935	F
rocklandsample_A00072203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	23.0	R	A00072203	F
rocklandsample_A00066822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	26.0	R	A00066822	F
rocklandsample_A00066236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	33.0	R	A00066236	M
rocklandsample_A00073600	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	22.0	R	A00073600	F
rocklandsample_A00060773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	23.0	R	A00060773	F
rocklandsample_A00066812	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	23.0	R	A00066812	M
rocklandsample_A00066926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	23.0	R	A00066926	M
rocklandsample_A00065379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	42.0	R	A00065379	M
rocklandsample_A00066091	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	22.0	R	A00066091	M
rocklandsample_A00066781	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	27.0	R	A00066781	M
rocklandsample_A00060662	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	26.0	R	A00060662	M
rocklandsample_A00066865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	36.0	R	A00066865	F
rocklandsample_A00066153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	21.0	R	A00066153	M
rocklandsample_A00074000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	30.0	L	A00074000	M
rocklandsample_A00073330	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	n/a	n/a	A00073330	n/a
rocklandsample_A00065565	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	84.0	R	A00065565	M
rocklandsample_A00063003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	13.0	R	A00063003	M
rocklandsample_A00039943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	15.0	R	A00039943	M
rocklandsample_A00055612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	...	NaN	NaN	NaN	NaN	NaN	NaN	8.0	L	A00055612	F

	atLocation	subj_id
abide_initiative_50642	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	abide_initiative_50642
abide_initiative_50646	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	abide_initiative_50646
abide_initiative_50647	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	abide_initiative_50647
abide_initiative_50649	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	abide_initiative_50649
abide_initiative_50653	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	abide_initiative_50653
abide_initiative_50654	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	abide_initiative_50654
abide_initiative_50656	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	abide_initiative_50656
abide_initiative_50659	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	abide_initiative_50659
abide_initiative_50660	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	abide_initiative_50660
abide_initiative_50663	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	abide_initiative_50663
abide_initiative_50664	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	abide_initiative_50664
abide_initiative_50665	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	abide_initiative_50665
abide_initiative_50666	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	abide_initiative_50666
abide_initiative_50668	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	abide_initiative_50668
abide_initiative_50643	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	abide_initiative_50643
abide_initiative_50644	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	abide_initiative_50644
abide_initiative_50645	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	abide_initiative_50645
abide_initiative_50648	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	abide_initiative_50648
abide_initiative_50650	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	abide_initiative_50650
abide_initiative_50651	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	abide_initiative_50651
abide_initiative_50652	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	abide_initiative_50652
abide_initiative_50655	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	abide_initiative_50655
abide_initiative_50657	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	abide_initiative_50657
abide_initiative_50658	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	abide_initiative_50658
abide_initiative_50661	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	abide_initiative_50661
abide_initiative_50667	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	abide_initiative_50667
abide_initiative_50669	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	abide_initiative_50669
abide_initiative_51456	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	abide_initiative_51456
abide_initiative_51457	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	abide_initiative_51457
abide_initiative_51458	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	abide_initiative_51458
...	...	...
rocklandsample_A00057035	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	rocklandsample_A00057035
rocklandsample_A00057182	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	rocklandsample_A00057182
rocklandsample_A00057203	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	rocklandsample_A00057203
rocklandsample_A00057235	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	rocklandsample_A00057235
rocklandsample_A00057372	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	rocklandsample_A00057372
rocklandsample_A00057444	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	rocklandsample_A00057444
rocklandsample_A00057786	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	rocklandsample_A00057786
rocklandsample_A00057808	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	rocklandsample_A00057808
rocklandsample_A00057965	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	rocklandsample_A00057965
rocklandsample_A00058214	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	rocklandsample_A00058214
rocklandsample_A00058218	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	rocklandsample_A00058218
rocklandsample_A00058503	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	rocklandsample_A00058503
rocklandsample_A00058552	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	rocklandsample_A00058552
rocklandsample_A00058667	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	rocklandsample_A00058667
rocklandsample_A00058952	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	rocklandsample_A00058952
rocklandsample_A00058999	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	rocklandsample_A00058999
rocklandsample_A00059344	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	rocklandsample_A00059344
rocklandsample_A00059346	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	rocklandsample_A00059346
rocklandsample_A00059428	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	rocklandsample_A00059428
rocklandsample_A00059756	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	rocklandsample_A00059756
rocklandsample_A00059845	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	rocklandsample_A00059845
rocklandsample_A00059911	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	rocklandsample_A00059911
rocklandsample_A00060006	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	rocklandsample_A00060006
rocklandsample_A00060169	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	rocklandsample_A00060169
rocklandsample_A00060279	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	rocklandsample_A00060279
rocklandsample_A00060372	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	rocklandsample_A00060372
rocklandsample_A00060430	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	rocklandsample_A00060430
rocklandsample_A00060471	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	rocklandsample_A00060471
rocklandsample_A00060480	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	rocklandsample_A00060480
rocklandsample_A00060516	https://s3.amazonaws.com/fcp-indi-new/data/Pro...	rocklandsample_A00060516

	SITE_ID	SUB_ID	DX_GROUP	DSM_IV_TR	AGE_AT_SCAN	SEX	HANDEDNESS_CATEGORY	FIQ
0	CALTECH	51456	1	4	55.40	1	R	126.0
1	CALTECH	51457	1	4	22.90	1	Ambi	107.0
2	CALTECH	51458	1	1	39.20	1	R	93.0
3	CALTECH	51459	1	1	22.80	1	R	106.0
4	CALTECH	51460	1	1	34.60	2	Ambi	133.0
5	CALTECH	51461	1	4	37.70	1	R	99.0
6	CALTECH	51462	1	1	20.20	2	R	107.0
7	CALTECH	51463	1	1	20.20	2	R	102.0
8	CALTECH	51464	1	1	20.90	1	Ambi	101.0
9	CALTECH	51465	1	1	20.20	1	R	96.0
10	CALTECH	51466	1	1	27.60	1	Ambi	106.0
11	CALTECH	51467	1	1	23.40	1	R	93.0
12	CALTECH	51468	1	1	20.10	1	R	100.0
13	CALTECH	51469	1	4	45.10	1	R	104.0
14	CALTECH	51470	1	4	29.10	1	R	124.0
15	CALTECH	51471	1	4	22.40	2	R	125.0
16	CALTECH	51472	1	1	17.50	1	Ambi	125.0
17	CALTECH	51473	1	1	21.20	1	R	-9999.0
18	CALTECH	51474	1	1	20.90	1	R	100.0
19	CALTECH	51475	2	0	44.20	1	R	104.0
20	CALTECH	51476	2	0	39.30	1	R	123.0
21	CALTECH	51477	2	0	42.50	1	R	97.0
22	CALTECH	51478	2	0	19.70	1	R	116.0
23	CALTECH	51479	2	0	20.00	2	R	111.0
24	CALTECH	51480	2	0	20.80	2	R	112.0
25	CALTECH	51481	2	0	27.90	1	R	117.0
26	CALTECH	51482	2	0	21.10	2	R	103.0
27	CALTECH	51483	2	0	20.90	1	Ambi	124.0
28	CALTECH	51484	2	0	23.60	1	R	128.0
29	CALTECH	51485	2	0	23.90	1	R	123.0
...	...	...	...	...	...	...	...	...
1082	YALE	50577	2	0	15.25	1	R	73.0
1083	YALE	50578	2	0	12.33	1	L	104.0
1084	YALE	50601	1	3	14.33	1	L	102.0
1085	YALE	50602	1	2	10.00	1	R	108.0
1086	YALE	50603	1	1	13.25	1	L	76.0
1087	YALE	50604	1	1	14.42	2	R	85.0
1088	YALE	50605	1	1	16.00	1	R	121.0
1089	YALE	50606	1	3	16.42	1	R	41.0
1090	YALE	50607	1	2	17.17	1	R	141.0
1091	YALE	50608	1	3	16.58	1	R	100.0
1092	YALE	50609	1	2	8.92	1	R	114.0
1093	YALE	50610	1	2	13.00	1	R	95.0
1094	YALE	50611	1	3	11.92	1	R	86.0
1095	YALE	50612	1	2	11.83	1	R	121.0
1096	YALE	50613	1	2	12.50	1	L	131.0
1097	YALE	50614	1	1	17.75	1	R	72.0
1098	YALE	50615	1	2	8.58	2	R	119.0
1099	YALE	50616	1	3	11.83	1	R	93.0
1100	YALE	50617	1	3	7.25	1	R	84.0
1101	YALE	50618	1	1	12.75	1	L	76.0
1102	YALE	50619	1	1	16.50	2	R	88.0
1103	YALE	50620	1	3	12.75	2	R	114.0
1104	YALE	50621	1	2	16.58	2	R	83.0
1105	YALE	50622	1	3	9.92	1	R	89.0
1106	YALE	50623	1	3	13.66	2	R	94.0
1107	YALE	50624	1	3	11.08	2	R	90.0
1108	YALE	50625	1	3	7.00	1	L	99.0
1109	YALE	50626	1	3	11.08	1	L	61.0
1110	YALE	50627	1	3	9.50	2	R	88.0
1111	YALE	50628	1	3	14.42	1	R	77.0