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from PIL import Image
import numpy as np
import scipy.misc
import nibabel as nb
from ndreg import *


    

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import os


    

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!ls -lh Aut1367.nii


    

    




-rw-r--r-- 1 root root 1.3G Mar  6 06:27 Aut1367.nii

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inImg = imgRead('Aut1367.nii')
imgShow(inImg, vmax = 500)


    

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type(inImg)
print np.asarray(inImg).shape


    

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inArray = sitk.GetArrayFromImage(inImg)


    

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print inArray.shape
print type(inArray)


    

    




(1225, 912, 595)
<type 'numpy.ndarray'>

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plane = 0;
for plane in (0,1,2,3):
    output = inArray[plane]
    ## Save as TIFF
    scipy.misc.toimage(output).save('sample' + str(plane) + '.tiff')


    

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