In [1]:

    

from ndreg import *
import matplotlib
import ndio.remote.neurodata as neurodata
import nibabel as nb


    

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inToken = 'Aut1367'


    

In [3]:

    

inImg = imgDownload(inToken, resolution=5)


    

In [4]:

    

refToken = "ara_ccf2"
refImg = imgDownload(refToken)


    

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imgShow(inImg, vmax=500)


    

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imgShow(refImg, vmax=500)


    

In [8]:

    

# Want to find initial orientation and change into RSA
reorientedImg = imgReorient(inImg, "LAS", "RSA")
imgShow(reorientedImg, vmax=500)


    

In [38]:

    

# Want to find initial orientation and change into RSA
reorientedImg = imgReorient(inImg, "LPS", "RSA")
imgShow(reorientedImg, vmax=500)


    

In [39]:

    

# Want to find initial orientation and change into RSA
reorientedImg = imgReorient(inImg, "LSA", "RSA")
imgShow(reorientedImg, vmax=500)


    

In [34]:

    

#SRA no

#SPR is close
#IPR is also close (need to orient middle column upright)

#IRP moves tails back to front

#IPL is mirror image of IPR about middle line (2, 1), (2, 2), (2, 3)

# Want to find initial orientation and change into RSA
reorientedImg = imgReorient(inImg, "RSP", "RSA")
imgShow(reorientedImg, vmax=500)


    

In [13]:

    

imgShow(refImg, vmax=500)


    

In [40]:

    

# Want to find initial orientation and change into RSA
reorientedImg = imgReorient(inImg, "LPS", "RSA")
imgShow(reorientedImg, vmax=500)