In [1]:
from cameo import webmodels
In [3]:
models = webmodels.index_models()
In [11]:
models
Out[11]:
id
name
doi
author
year
formats
organism
taxonomy
0
1
iJR904
10.1186/gb-2003-4-9-r54
Reed
2003
[sbml]
Escherichia coli str. K12 substr. MG1655
Bacteria; Proteobacteria; Gammaproteobacteria;...
1
2
iAF1260
10.1038/msb4100155
Feist
2007
[sbml]
Escherichia coli str. K12 substr. MG1655
Bacteria; Proteobacteria; Gammaproteobacteria;...
2
3
iMM904
10.1186/1752-0509-3-37
Mo
2007
[sbml]
Saccharomyces cerevisiae
Eukaryota; Opisthokonta; Fungi; Dikarya; Ascom...
3
4
iJP815
10.1371/journal.pcbi.1000210
Puchalka
2008
[sbml]
Pseudomonas putida str. KT2440
Bacteria; Proteobacteria; Gammaproteobacteria;...
4
5
iMO1056
10.1128/JB.01583-07
Oberhardt
2008
[]
Pseudomonas aeruginosa str. PAO1
Bacteria; Proteobacteria; Gammaproteobacteria;...
5
6
iIN800
10.1186/1752-0509-2-71
Nookaew
2008
[sbml]
Saccharomyces cerevisiae
Eukaryota; Opisthokonta; Fungi; Dikarya; Ascom...
6
7
iFF708
10.1101/gr.234503
Förster
2003
[sbml]
Saccharomyces cerevisiae str. Sc288
Eukaryota; Opisthokonta; Fungi; Dikarya; Ascom...
7
8
iCA1273
10.1186/1471-2164-12-9
Archer
2011
[sbml]
Escherichia coli W
Bacteria; Proteobacteria; Gammaproteobacteria;...
8
9
iJO1366
10.1038/msb.2011.65
Orth
2011
[sbml]
Escherichia coli str. K12 substr. MG1655
Bacteria; Proteobacteria; Gammaproteobacteria;...
9
10
Consensus v4
10.1038/nbt1492
Herrgård
2008
[]
Yeast
Eukaryota; Opisthokonta; Fungi;
10
11
iJN746
10.1186/1752-0509-2-79
Nogales
2008
[sbml]
Pseudomonas putida str. KT2440
Bacteria; Proteobacteria; Gammaproteobacteria;...
11
12
AbyMBEL891
10.1039/B916446D
Kim
2010
[sbml]
Acinetobacter baumannii AYE
Bacteria; Proteobacteria; Gammaproteobacteria;...
12
13
iJP962
10.1371/journal.pcbi.1001116
Oberhardt
2011
[sbml]
Pseudomonas putida str. KT2440
Bacteria; Proteobacteria; Gammaproteobacteria;...
13
14
iYL1228
10.1128/JB.01218-10
Liao
2011
[sbml]
Klebsiella pneumoniae str. MGH 78578
Bacteria; Proteobacteria; Gammaproteobacteria;...
14
15
iSR432
10.1186/1752-0509-4-31
Roberts
2010
[sbml]
Clostridium thermocellum str. ATCC 27405
Bacteria; Firmicutes; Clostridia; Clostridial...
15
16
iNJ661m
10.1186/1752-0509-4-160
Fang
2010
[sbml]
Mycobacterium tuberculosis str. H37Rv
Bacteria; Actinobacteria; Actinobacteria; Acti...
16
17
iCM925
10.1186/1752-0509-5-130
Milne
2011
[sbml]
Clostridium beijerinckii str. NCIMB 8052
Bacteria; Firmicutes; Clostridia; Clostridiale...
17
18
iBsu1103
10.1186/gb-2009-10-6-r69
Henry
2009
[sbml]
Bacillus subtilis 168
Bacteria; Firmicutes; Bacilli; Bacillales; Bac...
18
19
iAI549
10.1371/journal.pcbi.1000887
Islam
2010
[sbml]
Dehalococcoides ethenogenes str. 2061
Bacteria; Chloroflexi; Dehalococcoidetes; Deha...
19
20
iAF692
10.1038/msb4100046
Feist
2006
[sbml]
Methanosarcina barkeri
Archaea; Euryarchaeota; Methanomicrobia; Metha...
20
21
AraGEM
10.1186/1471-2164-12-S4-S5
de Oliveira Dal'Molin
2010
[sbml]
Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Strept...
21
22
Ecoli core Model
10.1128/ecosal.10.2.1
Orth
2010
[sbml]
Escherichia coli str. K12 substr. MG1655
Bacteria; Proteobacteria; Gammaproteobacteria;...
22
23
iIT341
10.1128/JB.187.16.5818-5830.2005
Thiele
2005
[sbml]
Helicobacter pylori str. 26695
Bacteria; Proteobacteria; delta/epsilon subdi...
23
24
iMH805/775
10.1038/nbt1492
Herrgård
2008
[sbml]
Saccharomyces cerevisiae str. Sc288
Eukaryota; Opisthokonta; Fungi; Dikarya; Ascom...
24
25
iND750
10.1101/gr.2250904
Duarte
2004
[sbml]
Saccharomyces cerevisiae str. Sc288
Eukaryota; Opisthokonta; Fungi; Dikarya; Ascom...
25
26
iRC1080
10.1038/msb.2011.52
Chang
2011
[sbml]
Chlamydomonas reinhardtii
Eukaryota; Viridiplantae; Chlorophyta; Chlorop...
26
27
iSB619
10.1186/1471-2180-5-8
Becker
2005
[sbml]
Staphylococcus aureus
Bacteria; Firmicutes; Bacilli; Bacillales; St...
27
28
iTH366
10.1038/msb.2010.60
Plata
2010
[sbml]
Plasmodium falciparum
Eukaryota; Alveolata; Apicomplexa; Aconoidasid...
28
29
iTZ479
10.1126/science.1174671
Zhang
2009
[sbml]
Thermotoga maritima str. MSB8
Bacteria; Thermotogae; Thermotogae; Thermotoga...
29
30
recon2
10.1038/nbt.2488
Thiele
2013
[sbml]
Homo sapiens
Eukaryota; Opisthokonta; Metazoa; Eumetazoa; B...
...
...
...
...
...
...
...
...
...
114
115
iAK692
10.1186/1752-0509-6-71
Klanchui
2012
[sbml]
Spirulina platensis C1
Bacteria; Cyanobacteria; Oscillatoriophycideae...
115
116
iSS352
10.1016/j.jbiotec.2013.01.023
Schatschneider
2013
[sbml]
Xanthomonas campestris pv. campestris str. B100
Bacteria; Proteobacteria; Gammaproteobacteria;...
116
117
iSS352
10.1016/j.jbiotec.2013.01.023
Schatschneider
2013
[sbml]
Xanthomonas campestris pv. campestris str. B100
Bacteria; Proteobacteria; Gammaproteobacteria;...
117
118
iOD907
Oscar Dias
2013
[sbml]
Kluyveromyces lactis NRRL Y-1140
Eukaryota; Opisthokonta; Fungi; Dikarya; Ascom...
118
119
iCAC490
10.1186/1752-0509-6-42
McAnulty
2012
[sbml]
Clostridium acetobutylicum ATCC 824
Bacteria; Firmicutes; Clostridia; Clostridiale...
119
120
iTZ479_v2
10.1016/j.ijhydene.2012.06.032
Nogales
2012
[]
Thermotoga maritima
Bacteria; Thermotogae; Thermotogae; Thermotoga...
120
121
iAH991
10.4161/gmic.22370
Heinken
2012
[]
Bacteroides thetaiotaomicron
Bacteria; Bacteroidetes/Chlorobi group; Bacter...
121
122
SPNV1.0
10.1186/1475-2859-13-41
Wang
2014
[excel]
Saccharopolyspora spinosa NRRL 18395
Bacteria; Actinobacteria; Actinobacteria; Acti...
122
123
iCyc792
10.1186/1752-0509-7-142
Mueller
2013
[sbml, excel]
Cyanothece sp. PCC 7424
Bacteria; Cyanobacteria; Oscillatoriophycideae...
123
124
iCyn731
10.1186/1752-0509-7-142
Mueller
2013
[sbml, excel]
Cyanothece sp. PCC 7425
Bacteria; Cyanobacteria; Oscillatoriophycideae...
124
125
iCyj826
10.1186/1752-0509-7-142
Mueller
2013
[sbml, excel]
Cyanothece sp. PCC 7822
Bacteria; Cyanobacteria; Oscillatoriophycideae...
125
126
iCyp752
10.1186/1752-0509-7-142
Mueller
2013
[sbml, excel]
Cyanothece sp. PCC 8801
Bacteria; Cyanobacteria; Oscillatoriophycideae...
126
127
iCyh755
10.1186/1752-0509-7-142
Mueller
2013
[sbml, excel]
Cyanothece sp. PCC 8802
Bacteria; Cyanobacteria; Oscillatoriophycideae...
127
128
iNF518
10.1007/s00253-013-5140-2
Flahaut
2013
[sbml]
Lactococcus lactis subsp. cremoris MG1363
Bacteria; Firmicutes; Bacilli; Lactobacillales...
128
129
iJL1454
10.1039/C3MB70090A
Jie Liu
2013
[excel]
Aspergillus terreus NIH2624
Eukaryota; Opisthokonta; Fungi; Dikarya; Ascom...
129
130
iBif452
10.1186/1752-0509-8-41
El-Semman
2014
[sbml, excel]
Bifidobacterium adolescentis L2-32
Bacteria; Actinobacteria; Actinobacteria; Acti...
130
131
iFap484
10.1186/1752-0509-8-41
El-Semman
2014
[sbml, excel]
Faecalibacterium prausnitzii A2-165
Bacteria; Firmicutes; Clostridia; Clostridiale...
131
132
iAM388
10.1186/1471-2164-12-535
Aline Metris
2011
[excel]
Campylobacter jejuni subsp. jejuni NCTC 11168
Bacteria; Proteobacteria; delta/epsilon subdiv...
132
133
iTT548
10.1186/1475-2859-13-61
Na-Rae Lee
2014
[sbml, excel]
Thermus thermophilus
Bacteria; Deinococcus-Thermus; Deinococci; The...
133
134
EctoGEM-1.0
10.1111/tpj.12627
Prigent
2014
[sbml]
Ectocarpus siliculosus
Eukaryota; Stramenopiles; PX clade; Phaeophyce...
134
135
iMF721
10.1111/1462-2920.12513
Fondi
2014
[sbml]
Pseudoalteromonas haloplanktis TAC125
Bacteria; Proteobacteria; Gammaproteobacteria;...
135
136
Arabidopsis core model
10.1104/pp.114.235358
Arnold
2014
[sbml]
Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Strept...
136
137
iHN637
10.1186/1475-2859-12-118
Harish Nagarajan
2013
[]
Clostridium ljungdahlii
Bacteria; Firmicutes; Clostridia; Clostridiale...
137
138
iCac802
10.1186/s13068-014-0144-4
Satyakam Dash
2014
[sbml]
Clostridium acetobutylicum ATCC 824
Bacteria; Firmicutes; Clostridia; Clostridiale...
138
139
iMLTC806cdf
10.1186/s12918-014-0117-z
M. Larocque
2014
[sbml, excel]
Clostridium difficile 630
Bacteria; Firmicutes; Clostridia; Clostridiale...
139
140
iCY1106
10.1186/s12918-014-0137-8
Chao Ye
2015
[sbml]
Mortierella alpina
Eukaryota; Opisthokonta; Fungi; Fungi incertae...
140
141
iMM518
10.1039/c3mb70421a
N. Goyal
2014
[excel]
Methanococcus maripaludis S2
Archaea; Euryarchaeota; Methanococci; Methanoc...
141
142
iPC1209
10.1016/j.febslet.2014.12.010
Cheng Wang
2015
[]
Pectobacterium carotovorum subsp. carotovorum PC1
Bacteria; Proteobacteria; Gammaproteobacteria;...
142
143
iNV706
10.1128/AEM.03279-14
N. Veith
2014
[]
Enterococcus faecalis V583
Bacteria; Firmicutes; Bacilli; Lactobacillales...
143
144
KoxGSC1457
10.1186/1475-2859-12-20
J. Park
2013
[]
Klebsiella oxytoca
Bacteria; Proteobacteria; Gammaproteobacteria;...
144 rows × 8 columns
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Content source: KristianJensen/cameo
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