In [5]:
import os, os.path
from itertools import groupby
import numpy as np
import csv
os.chdir('/home/will/Dropbox/IpythonShare/HIVCov/')
In [2]:
def fasta_iter(handle):
for key, lines in groupby(handle, lambda x: x.startswith('>')):
if key:
name = lines.next().strip()[1:]
else:
seq = ''.join(line.strip() for line in lines)
yield name, seq
In [14]:
with open('gp120.aln') as handle:
aligns = list(csv.reader(handle, delimiter = '\t'))
names = [n for n, s in aligns]
seqs = [s for n, s in aligns]
align_mat = np.array([list(s) for s in seqs])
Out[14]:
687
In [106]:
from itertools import product
allowed_lets = list('ACDEFGHIKLMNPQRSTVWY')
align_mask = np.array([align_mat == l for l in allowed_lets]).astype(np.float32)
In [107]:
#(lets, seqs, columns)
check_seq = align_mat[:,5]
check_mask = align_mask[:,:,5]
In [24]:
pAbase = align_mask.mean(axis = 1)
pAcheck = pAbase[:,5]
In [71]:
MI = np.zeros((754,))
for x, y in product(range(len(allowed_lets)), repeat = 2):
if pAcheck[x]==0:
continue
pXY = (np.tile(check_mask[x,:], (754,1)).T & align_mask[y,:,:]).mean(axis = 0)
mask = (pAbase[y,:] == 0) | (pXY == 0)
t = pXY[~mask]*np.log10(pXY[~mask]/(pAcheck[x]*pAbase[y,~mask]))
if (t != t).any():
print('breaking')
break
MI[~mask] += pXY[~mask]*np.log10(pXY[~mask]/(pAcheck[x]*pAbase[y,~mask]))
In [108]:
def calculate_MI_double(check_mask, pAcheck, align_mask, pAbase, allowed_lets = list('ACDEFGHIKLMNPQRSTVWY')):
MI = np.zeros((align_mask.shape[2],))
for x, y in product(range(len(allowed_lets)), repeat = 2):
if pAcheck[x]==0:
continue
pXY = (np.tile(check_mask[x,:], (pAbase.shape[1],1)).T * align_mask[y,:,:]).mean(axis = 0)
mask = (pAbase[y,:] == 0) | (pXY == 0)
MI[~mask] += pXY[~mask]*np.log10(pXY[~mask]/(pAcheck[x]*pAbase[y,~mask]))
return MI
In [102]:
dcheck_mask = check_mask.astype(np.float32)
dalign_mask = align_mask.astype(np.float32)
inds = np.arange(check_mask.shape[1])
Tres = calculate_MI_double(dcheck_mask[:,inds], pAcheck, dalign_mask, pAbase)
Rres = np.zeros((100,align_mat.shape[1]))
for rep in range(100):
np.random.shuffle(inds)
Rres[rep,:] = calculate_MI_double(dcheck_mask[:,inds], pAcheck, dalign_mask, pAbase)
In [105]:
def calulcate_nullMI(check_mask, pAcheck, align_mask, pAbase, allowed_lets = list('ACDEFGHIKLMNPQRSTVWY'), nreps = 100):
inds = np.arange(check_mask.shape[1])
Rres = np.zeros((nreps,align_mat.shape[1]))
for rep in range(nreps):
Rres[rep,:] = calculate_MI_double(check_mask[:,inds], pAcheck, align_mask, pAbase)
return Rres.mean(axis = 0)
In [117]:
#nullInfo = np.zeros((align_mat.shape[1], align_mat.shape[1]))
for col in range(54, align_mat.shape[1]):
if (col % 100 == 0) | (col == 1) | (col == 5) | (col == 10):
print(col)
check_mask = align_mask[:,:,col]
nullInfo[col,:] = calulcate_nullMI(check_mask, pAcheck, align_mask, pAbase, nreps = 50)
100
200
300
400
500
600
700
In [134]:
check_cols = [(i, align_mask[:,:,i], pAcheck, align_mask, pAbase) for i in range(align_mat.shape[1])]
In [135]:
from IPython.parallel import Client
rc = Client()
lview = rc.load_balanced_view()
In [139]:
@lview.parallel()
def multi_linker(tup):
col, check_mask, pAcheck, align_mask, pAbase = tup
return col, calulcate_nullMI(check_mask, pAcheck, align_mask, pAbase, nreps = 50)
In [140]:
larg_res = multi_linker.map(check_cols[:50])
In [141]:
for r in larg_res:
print(r)
[23:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[27:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[29:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[30:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[22:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[25:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[7:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[2:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[3:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[20:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[17:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[16:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[14:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[13:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[0:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[12:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[8:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[5:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[4:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[1:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[19:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[6:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[15:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[9:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[10:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[21:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[18:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[11:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[26:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[24:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[28:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[31:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[23:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[27:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[29:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[30:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[22:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[25:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[7:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[2:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[3:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[20:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[17:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[16:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[14:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[13:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[0:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[12:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[8:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
[5:apply]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)<string> in <module>()
/usr/local/lib/python3.2/dist-packages/ipython-0.13.1-py3.2.egg/IPython/parallel/client/remotefunction.py in <lambda>(f, *sequences)
203 if hasattr(self, '_map'):
204 if sys.version_info[0] >= 3:
--> 205 f = lambda f, *sequences: list(map(f, *sequences))
206 else:
207 f = map
<ipython-input-139-69680802d29a> in multi_linker(tup)
NameError: global name 'calulcate_nullMI' is not defined
In [ ]:
Content source: JudoWill/ResearchNotebooks
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