In [8]:
import qancode
In [9]:
qa = qancode.QANCODE(prod_url="https://encd-3132-delete.demo.encodedcc.org/", rc_url="https://delete-test.demo.encodedcc.org/")
In [10]:
#comparison as public user
qa.compare_facets(users=['Public'], browsers=['Safari'], browser_comparison=False)
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Getting type: /search/?type=Experiment
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Getting type: /search/?type=File
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Getting type: /search/?type=Library
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Getting type: /search/?type=AntibodyLot
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Getting type: /search/?type=Biosample
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Getting type: /search/?type=Donor
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Getting type: search/?type=GeneticModification
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Getting type: /search/?type=FileSet
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Getting type: /search/?type=Annotation
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Getting type: /search/?type=Series
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Getting type: /search/?type=OrganismDevelopmentSeries
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Getting type: /search/?type=UcscBrowserComposite
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Getting type: /search/?type=ReferenceEpigenome
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Getting type: /search/?type=Project
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Getting type: /search/?type=ReplicationTimingSeries
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Getting type: /search/?type=PublicationData
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Getting type: /search/?type=MatchedSet
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Getting type: /search/?type=TreatmentConcentrationSeries
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Getting type: /search/?type=TreatmentTimeSeries
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Getting type: /search/?type=Target
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Getting type: /search/?type=Pipeline
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Getting type: /search/?type=Publication
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Getting type: /search/?type=Software
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Getting type: /matrix/?type=Experiment
Matrix page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Getting type: /matrix/?type=Annotation
Matrix page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Getting type: /search/?type=Experiment
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Getting type: /search/?type=File
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Getting type: /search/?type=Library
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Getting type: /search/?type=AntibodyLot
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Getting type: /search/?type=Biosample
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Getting type: /search/?type=Donor
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Getting type: search/?type=GeneticModification
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Getting type: /search/?type=FileSet
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Getting type: /search/?type=Annotation
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Getting type: /search/?type=Series
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Getting type: /search/?type=OrganismDevelopmentSeries
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Getting type: /search/?type=UcscBrowserComposite
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Getting type: /search/?type=ReferenceEpigenome
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Getting type: /search/?type=Project
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Getting type: /search/?type=ReplicationTimingSeries
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Getting type: /search/?type=PublicationData
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Getting type: /search/?type=MatchedSet
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Getting type: /search/?type=TreatmentConcentrationSeries
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Getting type: /search/?type=TreatmentTimeSeries
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Getting type: /search/?type=Target
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Getting type: /search/?type=Pipeline
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Getting type: /search/?type=Publication
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Getting type: /search/?type=Software
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Getting type: /matrix/?type=Experiment
Matrix page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Getting type: /matrix/?type=Annotation
Matrix page detected
---------------------------------- Experiment ----------------------------------
Comparing data between URLs.
As user: Public
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=Experiment
ASSAY
prod: [('polyA RNA-seq', '776')]
rc: [('polyA mRNA RNA-seq', '776')]
ASSAY CATEGORY
rc: [('DNA sequencing', '512')]
Audit category
MATCH
Audit category2
MATCH
Audit category3
MATCH
Available data
MATCH
Biosample treatment
MATCH
Biosample type
MATCH
Date Submitted
MATCH
Date released
MATCH
Experiment status
MATCH
GENOME ASSEMBLY (VISUALIZATION)
GRCh38: 5981 (prod), 5904 (rc)
ce10: 598 (prod), 550 (rc)
ce11: 595 (prod), 547 (rc)
hg19: 6251 (prod), 6174 (rc)
mm10: 1551 (prod), 1504 (rc)
Lab
MATCH
Library depleted in
MATCH
Library insert size (nt)
MATCH
Library made from
MATCH
Library treatment
MATCH
Life stage
MATCH
Mapped read length (nt)
MATCH
ORGAN
brain: 922 (prod), 887 (rc)
Organism
MATCH
Project
MATCH
RFA
MATCH
Read length (nt)
MATCH
Replication type
MATCH
Run type
MATCH
Target of assay
MATCH
------------------------------------- File -------------------------------------
Comparing data between URLs.
As user: Public
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=File
Audit category
MATCH
Audit category2
MATCH
Audit category3
MATCH
Content category
MATCH
Content type
MATCH
File format
MATCH
File status
MATCH
Lab
MATCH
Mapping assembly
MATCH
Project
MATCH
Specific file format type
MATCH
----------------------------------- Library ------------------------------------
Comparing data between URLs.
As user: Public
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=Library
Audit category
MATCH
Audit category2
MATCH
Library status
MATCH
--------------------------------- AntibodyLot ----------------------------------
Comparing data between URLs.
As user: Public
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=AntibodyLot
Audit category
MATCH
Characterization method
MATCH
Clonality
MATCH
Eligibility status
MATCH
Host organism
MATCH
Lab
MATCH
Source
MATCH
Target Organism
MATCH
Target of antibody
MATCH
---------------------------------- Biosample -----------------------------------
Comparing data between URLs.
As user: Public
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=Biosample
Audit category
MATCH
Audit category2
MATCH
Biosample status
MATCH
Biosample treatment
MATCH
Biosample type
MATCH
Cell cycle phase
MATCH
Lab
MATCH
Life stage
MATCH
ORGAN
brain: 485 (prod), 479 (rc)
Organism
MATCH
Project
MATCH
RFA
MATCH
Sex
MATCH
Source
MATCH
Subcellular fraction
MATCH
------------------------------------ Donor -------------------------------------
Comparing data between URLs.
As user: Public
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=Donor
Audit category
MATCH
Data Type
MATCH
----------------------------- GeneticModification ------------------------------
Comparing data between URLs.
As user: Public
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: search/?type=GeneticModification
Category
MATCH
Genetic modification status
MATCH
Lab
MATCH
Method
MATCH
Purpose
MATCH
----------------------------------- FileSet ------------------------------------
Comparing data between URLs.
As user: Public
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=FileSet
Audit category
MATCH
Data Type
MATCH
---------------------------------- Annotation ----------------------------------
Comparing data between URLs.
As user: Public
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=Annotation
Annotation type
MATCH
Assay
MATCH
Available data
MATCH
Biosample type
MATCH
Date released
MATCH
Encyclopedia version
MATCH
File set status
MATCH
GENOME ASSEMBLY (VISUALIZATION)
hg19: 1216 (prod), 1215 (rc)
mm10: 455 (prod), 446 (rc)
mm9: 17 (prod), 14 (rc)
Lab
MATCH
Life stage
MATCH
ORGAN
brain: 329 (prod), 315 (rc)
Organism
MATCH
Project
MATCH
RFA
MATCH
Read length (nt)
MATCH
Run type
MATCH
Software used
MATCH
Target(s) of assay
MATCH
Target(s) of assay2
MATCH
------------------------------------ Series ------------------------------------
Comparing data between URLs.
As user: Public
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=Series
Audit category
MATCH
Data Type
MATCH
-------------------------- OrganismDevelopmentSeries ---------------------------
Comparing data between URLs.
As user: Public
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=OrganismDevelopmentSeries
Assay
MATCH
Available data
MATCH
Biosample type
MATCH
Date released
MATCH
Genome assembly (visualization)
MATCH
Lab
MATCH
Library depleted in
MATCH
Library insert size (nt)
MATCH
Library made from
MATCH
Life stage
MATCH
Mapped read length
MATCH
Organ
MATCH
Project
MATCH
Read length
MATCH
Series status
MATCH
Target of assay
MATCH
----------------------------- UcscBrowserComposite -----------------------------
Comparing data between URLs.
As user: Public
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=UcscBrowserComposite
Available data
MATCH
Composite status
MATCH
Date released
MATCH
Genome assembly (visualization)
MATCH
Lab
MATCH
Project
MATCH
RFA
MATCH
------------------------------ ReferenceEpigenome ------------------------------
Comparing data between URLs.
As user: Public
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=ReferenceEpigenome
Assay
MATCH
Audit category
MATCH
Available data
MATCH
Biosample treatment
MATCH
Biosample type
MATCH
Date released
MATCH
GENOME ASSEMBLY (VISUALIZATION)
GRCh38: 120 (prod), 119 (rc)
Lab
MATCH
Library depleted in
MATCH
Library insert size (nt)
MATCH
Library made from
MATCH
Life stage
MATCH
Mapped read length
MATCH
ORGAN
brain: 37 (prod), 35 (rc)
Organism
MATCH
Project
MATCH
RFA
MATCH
Read length
MATCH
Series status
MATCH
Target of assay
MATCH
----------------------------------- Project ------------------------------------
Comparing data between URLs.
As user: Public
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=Project
Assay
MATCH
Audit category
MATCH
Available data
MATCH
Biosample type
MATCH
Date released
MATCH
Genome assembly (visualization)
MATCH
Lab
MATCH
Organ
MATCH
Organism
MATCH
Project
MATCH
Project status
MATCH
Project type
MATCH
RFA
MATCH
Read length
MATCH
Run type
MATCH
Target of assay
MATCH
--------------------------- ReplicationTimingSeries ----------------------------
Comparing data between URLs.
As user: Public
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=ReplicationTimingSeries
Assay
MATCH
Available data
MATCH
Biosample type
MATCH
Date released
MATCH
Genome assembly (visualization)
MATCH
Lab
MATCH
Library insert size (nt)
MATCH
Library made from
MATCH
Life stage
MATCH
Organ
MATCH
Organism
MATCH
Project
MATCH
RFA
MATCH
Read length
MATCH
Series status
MATCH
Target of assay
MATCH
------------------------------- PublicationData --------------------------------
Comparing data between URLs.
As user: Public
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=PublicationData
Assay
MATCH
Biosample type
MATCH
Date released
MATCH
Genome assembly (visualization)
MATCH
Lab
MATCH
Organ
MATCH
Organism
MATCH
Project
MATCH
Publication data status
MATCH
RFA
MATCH
---------------------------------- MatchedSet ----------------------------------
Comparing data between URLs.
As user: Public
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=MatchedSet
Assay
MATCH
Available data
MATCH
Biosample term name
MATCH
Biosample type
MATCH
Date released
MATCH
Genome assembly (visualization)
MATCH
Lab
MATCH
Library insert size (nt)
MATCH
Library made from
MATCH
Life stage
MATCH
Mapped read length
MATCH
Organ
MATCH
Organ3
MATCH
Organism
MATCH
Project
MATCH
RFA
MATCH
Read length
MATCH
Series status
MATCH
Target of assay
MATCH
------------------------- TreatmentConcentrationSeries -------------------------
Comparing data between URLs.
As user: Public
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=TreatmentConcentrationSeries
Assay
MATCH
Available data
MATCH
Biosample treatment
MATCH
Date released
MATCH
Genome assembly (visualization)
MATCH
Lab
MATCH
Library insert size (nt)
MATCH
Library made from
MATCH
Life stage
MATCH
Mapped read length
MATCH
Organ
MATCH
Organism
MATCH
Project
MATCH
RFA
MATCH
Read length
MATCH
Series status
MATCH
Target
MATCH
Target of assay
MATCH
----------------------------- TreatmentTimeSeries ------------------------------
Comparing data between URLs.
As user: Public
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=TreatmentTimeSeries
Assay
MATCH
Available data
MATCH
Biosample treatment
MATCH
Biosample type
MATCH
Date released
MATCH
Genome assembly (visualization)
MATCH
Lab
MATCH
Library insert size (nt)
MATCH
Library made from
MATCH
Life stage
MATCH
Mapped read length
MATCH
Organ
MATCH
Organism
MATCH
Project
MATCH
RFA
MATCH
Read length
MATCH
Series status
MATCH
Target of assay
MATCH
------------------------------------ Target ------------------------------------
Comparing data between URLs.
As user: Public
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=Target
Organism
MATCH
Target of assay
MATCH
----------------------------------- Pipeline -----------------------------------
Comparing data between URLs.
As user: Public
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=Pipeline
Assay
MATCH
Developed by
MATCH
Pipeline groups
MATCH
Pipeline status
MATCH
--------------------------------- Publication ----------------------------------
Comparing data between URLs.
As user: Public
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=Publication
Available supplemental data
MATCH
Category
MATCH
Has dataset
MATCH
Journal
MATCH
Publication status
MATCH
Publication year
MATCH
Published by
MATCH
----------------------------------- Software -----------------------------------
Comparing data between URLs.
As user: Public
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=Software
Created by
MATCH
Purpose in project
MATCH
Software type
MATCH
---------------------------------- Experiment ----------------------------------
Comparing data between URLs.
As user: Public
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /matrix/?type=Experiment
ASSAY
prod: [('polyA RNA-seq', '776')]
rc: [('polyA mRNA RNA-seq', '776')]
ASSAY CATEGORY
rc: [('DNA sequencing', '512')]
Audit category
MATCH
Audit category2
MATCH
Audit category3
MATCH
Available data
MATCH
Biosample type
MATCH
Date released
MATCH
GENOME ASSEMBLY (VISUALIZATION)
GRCh38: 5981 (prod), 5904 (rc)
ce10: 598 (prod), 550 (rc)
ce11: 595 (prod), 547 (rc)
hg19: 6251 (prod), 6174 (rc)
mm10: 1551 (prod), 1504 (rc)
Lab
MATCH
ORGAN
brain: 922 (prod), 887 (rc)
Organism
MATCH
Project
MATCH
Target of assay
MATCH
---------------------------------- Annotation ----------------------------------
Comparing data between URLs.
As user: Public
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /matrix/?type=Annotation
Annotation type
MATCH
Available data
MATCH
Biosample type
MATCH
Date released
MATCH
Encyclopedia version
MATCH
GENOME ASSEMBLY (VISUALIZATION)
hg19: 1216 (prod), 1215 (rc)
mm10: 455 (prod), 446 (rc)
mm9: 17 (prod), 14 (rc)
ORGAN
brain: 329 (prod), 315 (rc)
Organism
MATCH
Project
MATCH
Target(s) of assay
MATCH
In [11]:
#comparison as admin user
qa.compare_facets(users=['encoded.test4@gmail.com'], browsers=['Safari'], browser_comparison=False)
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=Experiment
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=File
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=Library
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=AntibodyLot
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=Biosample
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=Donor
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: search/?type=GeneticModification
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=FileSet
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=Annotation
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=Series
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=OrganismDevelopmentSeries
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=UcscBrowserComposite
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=ReferenceEpigenome
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=Project
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=ReplicationTimingSeries
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=PublicationData
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=MatchedSet
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=TreatmentConcentrationSeries
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=TreatmentTimeSeries
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=Target
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=Pipeline
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=Publication
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=Software
Search page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /matrix/?type=Experiment
Matrix page detected
Opening https://encd-3132-delete.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /matrix/?type=Annotation
Matrix page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=Experiment
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=File
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=Library
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=AntibodyLot
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=Biosample
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=Donor
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: search/?type=GeneticModification
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=FileSet
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=Annotation
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=Series
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=OrganismDevelopmentSeries
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=UcscBrowserComposite
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=ReferenceEpigenome
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=Project
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=ReplicationTimingSeries
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=PublicationData
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=MatchedSet
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=TreatmentConcentrationSeries
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=TreatmentTimeSeries
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=Target
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=Pipeline
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=Publication
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /search/?type=Software
Search page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /matrix/?type=Experiment
Matrix page detected
Opening https://delete-test.demo.encodedcc.org/ in Safari
Logging in as encoded.test4@gmail.com
Login successful
Refreshing.
Getting type: /matrix/?type=Annotation
Matrix page detected
---------------------------------- Experiment ----------------------------------
Comparing data between URLs.
As user: encoded.test4@gmail.com
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=Experiment
ASSAY
prod: [('polyA RNA-seq', '796')]
rc: [('polyA mRNA RNA-seq', '796')]
ASSAY CATEGORY
DNA sequencing: 11 (prod), 571 (rc)
Audit category
MATCH
Audit category2
MATCH
Audit category3
MATCH
AUDIT CATEGORY4
out of date analysis: 45 (prod), 206 (rc)
prod: [('validation error', '8')]
Available data
MATCH
Biosample treatment
MATCH
Biosample type
MATCH
Date Submitted
MATCH
Date released
MATCH
Experiment status
MATCH
GENOME ASSEMBLY (VISUALIZATION)
GRCh38: 6258 (prod), 6181 (rc)
ce10: 808 (prod), 760 (rc)
ce11: 801 (prod), 753 (rc)
hg19: 6542 (prod), 6465 (rc)
mm10: 1573 (prod), 1526 (rc)
Lab
MATCH
Library depleted in
MATCH
Library insert size (nt)
MATCH
Library made from
MATCH
Library treatment
MATCH
Life stage
MATCH
Mapped read length (nt)
MATCH
ORGAN
brain: 969 (prod), 934 (rc)
Organism
MATCH
Project
MATCH
RFA
MATCH
Read length (nt)
MATCH
Replication type
MATCH
Run type
MATCH
Target of assay
MATCH
------------------------------------- File -------------------------------------
Comparing data between URLs.
As user: encoded.test4@gmail.com
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=File
Audit category
MATCH
Audit category2
MATCH
Audit category3
MATCH
AUDIT CATEGORY4
out of date analysis: 197 (prod), 1499 (rc)
prod: [('validation error', '14')]
Content category
MATCH
Content type
MATCH
File format
MATCH
File status
MATCH
Lab
MATCH
Mapping assembly
MATCH
Project
MATCH
Specific file format type
MATCH
----------------------------------- Library ------------------------------------
Comparing data between URLs.
As user: encoded.test4@gmail.com
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=Library
Audit category
MATCH
Audit category2
MATCH
Audit category3
MATCH
Library status
MATCH
--------------------------------- AntibodyLot ----------------------------------
Comparing data between URLs.
As user: encoded.test4@gmail.com
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=AntibodyLot
Audit category
MATCH
Audit category2
MATCH
Characterization method
MATCH
Clonality
MATCH
Eligibility status
MATCH
Host organism
MATCH
Lab
MATCH
Source
MATCH
Target Organism
MATCH
Target of antibody
MATCH
---------------------------------- Biosample -----------------------------------
Comparing data between URLs.
As user: encoded.test4@gmail.com
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=Biosample
Audit category
MATCH
Audit category2
MATCH
Audit category3
MATCH
Biosample status
MATCH
Biosample treatment
MATCH
Biosample type
MATCH
Cell cycle phase
MATCH
Lab
MATCH
Life stage
MATCH
ORGAN
brain: 548 (prod), 542 (rc)
Organism
MATCH
Project
MATCH
RFA
MATCH
Sex
MATCH
Source
MATCH
Subcellular fraction
MATCH
------------------------------------ Donor -------------------------------------
Comparing data between URLs.
As user: encoded.test4@gmail.com
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=Donor
Audit category
MATCH
Audit category2
MATCH
Data Type
MATCH
----------------------------- GeneticModification ------------------------------
Comparing data between URLs.
As user: encoded.test4@gmail.com
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: search/?type=GeneticModification
Category
MATCH
Genetic modification status
MATCH
Lab
MATCH
Method
MATCH
Purpose
MATCH
----------------------------------- FileSet ------------------------------------
Comparing data between URLs.
As user: encoded.test4@gmail.com
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=FileSet
Audit category
MATCH
Audit category2
MATCH
Data Type
MATCH
---------------------------------- Annotation ----------------------------------
Comparing data between URLs.
As user: encoded.test4@gmail.com
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=Annotation
Annotation type
MATCH
Assay
MATCH
Audit category
MATCH
Available data
MATCH
Biosample type
MATCH
Date released
MATCH
Encyclopedia version
MATCH
File set status
MATCH
GENOME ASSEMBLY (VISUALIZATION)
hg19: 4265 (prod), 4264 (rc)
mm10: 460 (prod), 451 (rc)
mm9: 17 (prod), 14 (rc)
Lab
MATCH
Life stage
MATCH
ORGAN
brain: 362 (prod), 348 (rc)
Organism
MATCH
Project
MATCH
RFA
MATCH
Read length (nt)
MATCH
Run type
MATCH
Software used
MATCH
Target(s) of assay
MATCH
Target(s) of assay2
MATCH
------------------------------------ Series ------------------------------------
Comparing data between URLs.
As user: encoded.test4@gmail.com
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=Series
Audit category
MATCH
Audit category2
MATCH
Data Type
MATCH
-------------------------- OrganismDevelopmentSeries ---------------------------
Comparing data between URLs.
As user: encoded.test4@gmail.com
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=OrganismDevelopmentSeries
Assay
MATCH
Audit category
MATCH
Available data
MATCH
Biosample type
MATCH
Date released
MATCH
Genome assembly (visualization)
MATCH
Lab
MATCH
Library depleted in
MATCH
Library insert size (nt)
MATCH
Library made from
MATCH
Life stage
MATCH
Mapped read length
MATCH
Organ
MATCH
Project
MATCH
Read length
MATCH
Series status
MATCH
Target of assay
MATCH
----------------------------- UcscBrowserComposite -----------------------------
Comparing data between URLs.
As user: encoded.test4@gmail.com
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=UcscBrowserComposite
Audit category
MATCH
Available data
MATCH
Composite status
MATCH
Date released
MATCH
Genome assembly (visualization)
MATCH
Lab
MATCH
Project
MATCH
RFA
MATCH
------------------------------ ReferenceEpigenome ------------------------------
Comparing data between URLs.
As user: encoded.test4@gmail.com
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=ReferenceEpigenome
Assay
MATCH
Audit category
MATCH
Audit category2
MATCH
Available data
MATCH
Biosample treatment
MATCH
Biosample type
MATCH
Date released
MATCH
GENOME ASSEMBLY (VISUALIZATION)
GRCh38: 183 (prod), 182 (rc)
Lab
MATCH
Library depleted in
MATCH
Library insert size (nt)
MATCH
Library made from
MATCH
Life stage
MATCH
Mapped read length
MATCH
ORGAN
brain: 40 (prod), 38 (rc)
Organism
MATCH
Project
MATCH
RFA
MATCH
Read length
MATCH
Series status
MATCH
Target of assay
MATCH
----------------------------------- Project ------------------------------------
Comparing data between URLs.
As user: encoded.test4@gmail.com
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=Project
Assay
MATCH
Audit category
MATCH
Audit category2
MATCH
Available data
MATCH
Biosample type
MATCH
Date released
MATCH
Genome assembly (visualization)
MATCH
Lab
MATCH
Organ
MATCH
Organism
MATCH
Project
MATCH
Project status
MATCH
Project type
MATCH
RFA
MATCH
Read length
MATCH
Run type
MATCH
Target of assay
MATCH
--------------------------- ReplicationTimingSeries ----------------------------
Comparing data between URLs.
As user: encoded.test4@gmail.com
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=ReplicationTimingSeries
Assay
MATCH
Audit category
MATCH
Available data
MATCH
Biosample type
MATCH
Date released
MATCH
Genome assembly (visualization)
MATCH
Lab
MATCH
Library insert size (nt)
MATCH
Library made from
MATCH
Life stage
MATCH
Organ
MATCH
Organism
MATCH
Project
MATCH
RFA
MATCH
Read length
MATCH
Series status
MATCH
Target of assay
MATCH
------------------------------- PublicationData --------------------------------
Comparing data between URLs.
As user: encoded.test4@gmail.com
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=PublicationData
Assay
MATCH
Audit category
MATCH
Biosample type
MATCH
Date released
MATCH
Genome assembly (visualization)
MATCH
Lab
MATCH
Organ
MATCH
Organism
MATCH
Project
MATCH
Publication data status
MATCH
RFA
MATCH
---------------------------------- MatchedSet ----------------------------------
Comparing data between URLs.
As user: encoded.test4@gmail.com
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=MatchedSet
Assay
MATCH
Audit category
MATCH
Available data
MATCH
Biosample term name
MATCH
Biosample type
MATCH
Date released
MATCH
Genome assembly (visualization)
MATCH
Lab
MATCH
Library insert size (nt)
MATCH
Library made from
MATCH
Life stage
MATCH
Mapped read length
MATCH
Organ
MATCH
Organ3
MATCH
Organism
MATCH
Project
MATCH
RFA
MATCH
Read length
MATCH
Series status
MATCH
Target of assay
MATCH
------------------------- TreatmentConcentrationSeries -------------------------
Comparing data between URLs.
As user: encoded.test4@gmail.com
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=TreatmentConcentrationSeries
Assay
MATCH
Available data
MATCH
Biosample treatment
MATCH
Date released
MATCH
Genome assembly (visualization)
MATCH
Lab
MATCH
Library insert size (nt)
MATCH
Library made from
MATCH
Life stage
MATCH
Mapped read length
MATCH
Organ
MATCH
Organism
MATCH
Project
MATCH
RFA
MATCH
Read length
MATCH
Series status
MATCH
Target
MATCH
Target of assay
MATCH
----------------------------- TreatmentTimeSeries ------------------------------
Comparing data between URLs.
As user: encoded.test4@gmail.com
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=TreatmentTimeSeries
Assay
MATCH
Audit category
MATCH
Available data
MATCH
Biosample treatment
MATCH
Biosample type
MATCH
Date released
MATCH
GENOME ASSEMBLY (VISUALIZATION)
GRCh38: 27 (prod), 26 (rc)
Lab
MATCH
Library depleted in
MATCH
Library insert size (nt)
MATCH
Library made from
MATCH
Life stage
MATCH
Mapped read length
MATCH
Organ
MATCH
Organism
MATCH
Project
MATCH
RFA
MATCH
Read length
MATCH
Series status
MATCH
Target of assay
MATCH
------------------------------------ Target ------------------------------------
Comparing data between URLs.
As user: encoded.test4@gmail.com
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=Target
Organism
MATCH
Target of assay
MATCH
----------------------------------- Pipeline -----------------------------------
Comparing data between URLs.
As user: encoded.test4@gmail.com
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=Pipeline
Assay
MATCH
Audit category
MATCH
Developed by
MATCH
Pipeline groups
MATCH
Pipeline status
MATCH
--------------------------------- Publication ----------------------------------
Comparing data between URLs.
As user: encoded.test4@gmail.com
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=Publication
Audit category
MATCH
Available supplemental data
MATCH
Category
MATCH
Has dataset
MATCH
Journal
MATCH
Publication status
MATCH
Publication year
MATCH
Published by
MATCH
----------------------------------- Software -----------------------------------
Comparing data between URLs.
As user: encoded.test4@gmail.com
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /search/?type=Software
Created by
MATCH
Purpose in project
MATCH
Software type
MATCH
---------------------------------- Experiment ----------------------------------
Comparing data between URLs.
As user: encoded.test4@gmail.com
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /matrix/?type=Experiment
ASSAY
prod: [('polyA RNA-seq', '796')]
rc: [('polyA mRNA RNA-seq', '796')]
ASSAY CATEGORY
DNA sequencing: 11 (prod), 571 (rc)
Audit category
MATCH
Audit category2
MATCH
Audit category3
MATCH
AUDIT CATEGORY4
out of date analysis: 45 (prod), 206 (rc)
prod: [('validation error', '8')]
Available data
MATCH
Biosample type
MATCH
Date released
MATCH
GENOME ASSEMBLY (VISUALIZATION)
GRCh38: 6258 (prod), 6181 (rc)
ce10: 808 (prod), 760 (rc)
ce11: 801 (prod), 753 (rc)
hg19: 6542 (prod), 6465 (rc)
mm10: 1573 (prod), 1526 (rc)
Lab
MATCH
ORGAN
brain: 969 (prod), 934 (rc)
Organism
MATCH
Project
MATCH
Target of assay
MATCH
---------------------------------- Annotation ----------------------------------
Comparing data between URLs.
As user: encoded.test4@gmail.com
Browser: Safari
First URL: https://encd-3132-delete.demo.encodedcc.org/
Second URL: https://delete-test.demo.encodedcc.org/
Item type: /matrix/?type=Annotation
Annotation type
MATCH
Audit category
MATCH
Available data
MATCH
Biosample type
MATCH
Date released
MATCH
Encyclopedia version
MATCH
GENOME ASSEMBLY (VISUALIZATION)
hg19: 4265 (prod), 4264 (rc)
mm10: 460 (prod), 451 (rc)
mm9: 17 (prod), 14 (rc)
ORGAN
brain: 362 (prod), 348 (rc)
Organism
MATCH
Project
MATCH
Target(s) of assay
MATCH
Content source: ENCODE-DCC/pyencoded-tools
Similar notebooks: