In [1]:
import os
from shutil import copyfile
import subprocess
from spearmint_ghsom import main as ghsom_main
import numpy as np
import pickle
from time import time
import networkx as nx
def save_obj(obj, name):
with open(name + '.pkl', 'wb') as f:
pickle.dump(obj, f, pickle.HIGHEST_PROTOCOL)
def load_obj(name):
with open(name + '.pkl', 'rb') as f:
return pickle.load(f)
#root dir
os.chdir("C:\Miniconda3\Jupyter\GHSOM_simplex_dsd")
#save directory
dir = os.path.abspath("real_world_benchmarks_derived")
#number of times to repeat
num_repeats = 100
#make save directory
if not os.path.isdir(dir):
os.mkdir(dir)
#change to dir
os.chdir(dir)
#network names
network_names = ['karate','dolphin','polbooks','football']
#community labels
labels = ['club','group','value','value']
overall_nmi_scores = np.zeros((len(network_names), num_repeats))
overall_communities_detected = np.zeros((len(network_names), num_repeats))
for i in range(len(network_names)):
#name of current network
network_name = network_names[i]
#label of current network
label = labels[i]
#create directory
dir_string = os.path.join(dir, network_name)
if not os.path.isdir(dir_string):
os.mkdir(dir_string)
#change working directory
os.chdir(dir_string)
if os.path.isfile('nmi_scores.csv'):
print 'already completed {} network, loading nmi scores and continuing'.format(network_name)
nmi_scores = np.genfromtxt('nmi_scores.csv', delimiter=',')
overall_nmi_scores[i] = nmi_scores
communities_detected = np.genfromtxt('communties_detected.csv', delimiter=',')
overall_communities_detected[i] = communities_detected
continue
#record NMI scores
if not os.path.isfile('nmi_scores.pkl'):
print 'creating new nmi scores array'
nmi_scores = np.zeros(num_repeats)
else:
print 'loading nmi score progress'
nmi_scores = load_obj('nmi_scores')
#record running times
if not os.path.isfile('running_times.pkl'):
print 'creating new running time array'
running_times = np.zeros(num_repeats)
else:
print 'loading running time progress'
running_times = load_obj('running_times')
#record communities detected
if not os.path.isfile('communities_detected.pkl'):
print 'creating new communites detected array'
communities_detected = np.zeros(num_repeats)
else:
print 'loading communites detected progress'
communities_detected = load_obj('communities_detected')
#copy embedded gml
gml_filename = 'embedded_{}.gml'.format(network_name)
if not os.path.isfile(gml_filename):
source = "C:\Miniconda3\Jupyter\GHSOM_simplex_dsd\{}".format(gml_filename)
copyfile(source, gml_filename)
##calculate density and derive parameter setting
#load graph and calculate density
G = nx.read_gml(gml_filename)
density = nx.density(G)
#derive parameter setting -- from scipy
e_sg = 0.377746404462 * density + 0.590217653032
print 'density of network={}'.format(density)
print 'e_sg={}'.format(e_sg)
#ghsom parameters
params = {'w': 0.0001,
'eta': 0.0001,
'sigma': 1,
'e_sg': e_sg,
'e_en': 0.8}
#generate networks
for r in range(1,num_repeats+1):
##score for this network
if not np.all(nmi_scores[r-1]):
start_time = time()
print 'starting ghsom for: {}, repeat: {}'.format(gml_filename, r)
nmi_score, comm_det = ghsom_main(params, gml_filename, label, 10000)
nmi_scores[r-1] = nmi_score
communities_detected[r-1] = comm_det
running_time = time() - start_time
print 'running time of algorithm: {}'.format(running_time)
running_times[r-1] = running_time
#save
save_obj(nmi_scores, 'nmi_scores')
save_obj(running_times, 'running_times')
save_obj(communities_detected, 'communities_detected')
print 'saved nmi score for network {}: {}'.format(gml_filename, nmi_score)
print 'saved communities detected for network {}: {}'.format(gml_filename, comm_det)
print
##output nmi scores to csv file
print 'writing nmi scores and running times to file'
np.savetxt('nmi_scores.csv',nmi_scores,delimiter=',')
np.savetxt('running_times.csv',running_times,delimiter=',')
np.savetxt('communties_detected.csv',communities_detected,delimiter=',')
overall_nmi_scores[i] = nmi_scores
overall_communities_detected[i] = communities_detected
print 'DONE'
print 'OVERALL NMI SCORES'
print overall_nmi_scores
print overall_communities_detected
creating new nmi scores array
creating new running time array
creating new communites detected array
density of network=0.139037433155
e_sg=0.642738543492
starting ghsom for: embedded_karate.gml, repeat: 1
running time of algorithm: 79.9059998989
saved nmi score for network embedded_karate.gml: [ 0.5294656]
saved communities detected for network embedded_karate.gml: 4
starting ghsom for: embedded_karate.gml, repeat: 2
running time of algorithm: 52.4760000706
saved nmi score for network embedded_karate.gml: [ 0.64121264]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 3
running time of algorithm: 52.871999979
saved nmi score for network embedded_karate.gml: [ 0.43852015]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 4
running time of algorithm: 52.6759998798
saved nmi score for network embedded_karate.gml: [ 0.43852015]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 5
running time of algorithm: 80.5260000229
saved nmi score for network embedded_karate.gml: [ 0.5294656]
saved communities detected for network embedded_karate.gml: 4
starting ghsom for: embedded_karate.gml, repeat: 6
running time of algorithm: 53.1180000305
saved nmi score for network embedded_karate.gml: [ 0.44880013]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 7
running time of algorithm: 80.2339999676
saved nmi score for network embedded_karate.gml: [ 0.46959898]
saved communities detected for network embedded_karate.gml: 4
starting ghsom for: embedded_karate.gml, repeat: 8
running time of algorithm: 52.4200000763
saved nmi score for network embedded_karate.gml: [ 0.43852015]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 9
running time of algorithm: 52.7260000706
saved nmi score for network embedded_karate.gml: [ 0.4767809]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 10
running time of algorithm: 81.3209998608
saved nmi score for network embedded_karate.gml: [ 0.5294656]
saved communities detected for network embedded_karate.gml: 4
starting ghsom for: embedded_karate.gml, repeat: 11
running time of algorithm: 52.4659998417
saved nmi score for network embedded_karate.gml: [ 0.44880013]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 12
running time of algorithm: 79.3540000916
saved nmi score for network embedded_karate.gml: [ 0.5294656]
saved communities detected for network embedded_karate.gml: 4
starting ghsom for: embedded_karate.gml, repeat: 13
running time of algorithm: 52.2230000496
saved nmi score for network embedded_karate.gml: [ 0.43852015]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 14
running time of algorithm: 79.2849998474
saved nmi score for network embedded_karate.gml: [ 0.5294656]
saved communities detected for network embedded_karate.gml: 4
starting ghsom for: embedded_karate.gml, repeat: 15
running time of algorithm: 78.7910001278
saved nmi score for network embedded_karate.gml: [ 0.5294656]
saved communities detected for network embedded_karate.gml: 4
starting ghsom for: embedded_karate.gml, repeat: 16
running time of algorithm: 52.5479998589
saved nmi score for network embedded_karate.gml: [ 0.52460052]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 17
running time of algorithm: 52.5720000267
saved nmi score for network embedded_karate.gml: [ 0.4767809]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 18
running time of algorithm: 79.3300001621
saved nmi score for network embedded_karate.gml: [ 0.58033157]
saved communities detected for network embedded_karate.gml: 4
starting ghsom for: embedded_karate.gml, repeat: 19
running time of algorithm: 60.4580001831
saved nmi score for network embedded_karate.gml: [ 0.44880013]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 20
running time of algorithm: 80.2710001469
saved nmi score for network embedded_karate.gml: [ 0.5294656]
saved communities detected for network embedded_karate.gml: 4
starting ghsom for: embedded_karate.gml, repeat: 21
running time of algorithm: 53.1679999828
saved nmi score for network embedded_karate.gml: [ 0.43852015]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 22
running time of algorithm: 52.7720000744
saved nmi score for network embedded_karate.gml: [ 0.52460052]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 23
running time of algorithm: 53.1399998665
saved nmi score for network embedded_karate.gml: [ 0.44880013]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 24
running time of algorithm: 53.0390000343
saved nmi score for network embedded_karate.gml: [ 0.59204037]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 25
running time of algorithm: 52.9400000572
saved nmi score for network embedded_karate.gml: [ 0.43852015]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 26
running time of algorithm: 59.3170001507
saved nmi score for network embedded_karate.gml: [ 0.44880013]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 27
running time of algorithm: 52.4509999752
saved nmi score for network embedded_karate.gml: [ 0.52003736]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 28
running time of algorithm: 52.6529998779
saved nmi score for network embedded_karate.gml: [ 0.52460052]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 29
running time of algorithm: 52.0050001144
saved nmi score for network embedded_karate.gml: [ 0.43852015]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 30
running time of algorithm: 80.2800002098
saved nmi score for network embedded_karate.gml: [ 0.5294656]
saved communities detected for network embedded_karate.gml: 4
starting ghsom for: embedded_karate.gml, repeat: 31
running time of algorithm: 52.5600001812
saved nmi score for network embedded_karate.gml: [ 0.52003736]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 32
running time of algorithm: 80.118999958
saved nmi score for network embedded_karate.gml: [ 0.46959898]
saved communities detected for network embedded_karate.gml: 4
starting ghsom for: embedded_karate.gml, repeat: 33
running time of algorithm: 80.3970000744
saved nmi score for network embedded_karate.gml: [ 0.5294656]
saved communities detected for network embedded_karate.gml: 4
starting ghsom for: embedded_karate.gml, repeat: 34
running time of algorithm: 53.0659999847
saved nmi score for network embedded_karate.gml: [ 0.58842383]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 35
running time of algorithm: 53.5320000648
saved nmi score for network embedded_karate.gml: [ 0.62312666]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 36
running time of algorithm: 80.0880000591
saved nmi score for network embedded_karate.gml: [ 0.47834623]
saved communities detected for network embedded_karate.gml: 4
starting ghsom for: embedded_karate.gml, repeat: 37
running time of algorithm: 52.6979999542
saved nmi score for network embedded_karate.gml: [ 0.43852015]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 38
running time of algorithm: 80.7940001488
saved nmi score for network embedded_karate.gml: [ 0.5294656]
saved communities detected for network embedded_karate.gml: 4
starting ghsom for: embedded_karate.gml, repeat: 39
running time of algorithm: 52.6169998646
saved nmi score for network embedded_karate.gml: [ 0.44880013]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 40
running time of algorithm: 52.989000082
saved nmi score for network embedded_karate.gml: [ 0.43852015]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 41
running time of algorithm: 52.7240002155
saved nmi score for network embedded_karate.gml: [ 0.52141818]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 42
running time of algorithm: 51.4850001335
saved nmi score for network embedded_karate.gml: [ 0.43852015]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 43
running time of algorithm: 80.3440001011
saved nmi score for network embedded_karate.gml: [ 0.43324696]
saved communities detected for network embedded_karate.gml: 4
starting ghsom for: embedded_karate.gml, repeat: 44
running time of algorithm: 80.1699998379
saved nmi score for network embedded_karate.gml: [ 0.5294656]
saved communities detected for network embedded_karate.gml: 4
starting ghsom for: embedded_karate.gml, repeat: 45
running time of algorithm: 52.6360001564
saved nmi score for network embedded_karate.gml: [ 0.52141818]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 46
running time of algorithm: 52.6050000191
saved nmi score for network embedded_karate.gml: [ 0.43852015]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 47
running time of algorithm: 52.9000000954
saved nmi score for network embedded_karate.gml: [ 0.52141818]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 48
running time of algorithm: 52.5040001869
saved nmi score for network embedded_karate.gml: [ 0.44880013]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 49
running time of algorithm: 79.8170001507
saved nmi score for network embedded_karate.gml: [ 0.5294656]
saved communities detected for network embedded_karate.gml: 4
starting ghsom for: embedded_karate.gml, repeat: 50
running time of algorithm: 80.2259998322
saved nmi score for network embedded_karate.gml: [ 0.43324696]
saved communities detected for network embedded_karate.gml: 4
starting ghsom for: embedded_karate.gml, repeat: 51
running time of algorithm: 52.6150000095
saved nmi score for network embedded_karate.gml: [ 0.44880013]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 52
running time of algorithm: 79.859000206
saved nmi score for network embedded_karate.gml: [ 0.58033157]
saved communities detected for network embedded_karate.gml: 4
starting ghsom for: embedded_karate.gml, repeat: 53
running time of algorithm: 52.8619999886
saved nmi score for network embedded_karate.gml: [ 0.52003736]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 54
running time of algorithm: 52.5410001278
saved nmi score for network embedded_karate.gml: [ 0.64121264]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 55
running time of algorithm: 79.5339999199
saved nmi score for network embedded_karate.gml: [ 0.5294656]
saved communities detected for network embedded_karate.gml: 4
starting ghsom for: embedded_karate.gml, repeat: 56
running time of algorithm: 52.3679997921
saved nmi score for network embedded_karate.gml: [ 0.59204037]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 57
running time of algorithm: 52.5620000362
saved nmi score for network embedded_karate.gml: [ 0.52460052]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 58
running time of algorithm: 52.0069999695
saved nmi score for network embedded_karate.gml: [ 0.52460052]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 59
running time of algorithm: 79.9880001545
saved nmi score for network embedded_karate.gml: [ 0.58033157]
saved communities detected for network embedded_karate.gml: 4
starting ghsom for: embedded_karate.gml, repeat: 60
running time of algorithm: 51.8129999638
saved nmi score for network embedded_karate.gml: [ 0.43852015]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 61
running time of algorithm: 52.8980000019
saved nmi score for network embedded_karate.gml: [ 0.52141818]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 62
running time of algorithm: 52.4529998302
saved nmi score for network embedded_karate.gml: [ 0.44880013]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 63
running time of algorithm: 52.370000124
saved nmi score for network embedded_karate.gml: [ 0.52460052]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 64
running time of algorithm: 79.6870000362
saved nmi score for network embedded_karate.gml: [ 0.46959898]
saved communities detected for network embedded_karate.gml: 4
starting ghsom for: embedded_karate.gml, repeat: 65
running time of algorithm: 51.5230000019
saved nmi score for network embedded_karate.gml: [ 0.52460052]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 66
running time of algorithm: 52.5269999504
saved nmi score for network embedded_karate.gml: [ 0.43852015]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 67
running time of algorithm: 51.4779999256
saved nmi score for network embedded_karate.gml: [ 0.43852015]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 68
running time of algorithm: 52.5529999733
saved nmi score for network embedded_karate.gml: [ 0.62312666]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 69
running time of algorithm: 51.614000082
saved nmi score for network embedded_karate.gml: [ 0.43310466]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 70
running time of algorithm: 51.5360000134
saved nmi score for network embedded_karate.gml: [ 0.52460052]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 71
running time of algorithm: 52.6600000858
saved nmi score for network embedded_karate.gml: [ 0.58842383]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 72
running time of algorithm: 79.7269999981
saved nmi score for network embedded_karate.gml: [ 0.43324696]
saved communities detected for network embedded_karate.gml: 4
starting ghsom for: embedded_karate.gml, repeat: 73
running time of algorithm: 52.0510001183
saved nmi score for network embedded_karate.gml: [ 0.44880013]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 74
running time of algorithm: 51.5739998817
saved nmi score for network embedded_karate.gml: [ 0.52141818]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 75
running time of algorithm: 52.4309999943
saved nmi score for network embedded_karate.gml: [ 0.43852015]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 76
running time of algorithm: 52.4220001698
saved nmi score for network embedded_karate.gml: [ 0.62312666]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 77
running time of algorithm: 51.9129998684
saved nmi score for network embedded_karate.gml: [ 0.44880013]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 78
running time of algorithm: 51.4619998932
saved nmi score for network embedded_karate.gml: [ 0.43852015]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 79
running time of algorithm: 78.9240000248
saved nmi score for network embedded_karate.gml: [ 0.5294656]
saved communities detected for network embedded_karate.gml: 4
starting ghsom for: embedded_karate.gml, repeat: 80
running time of algorithm: 78.5909998417
saved nmi score for network embedded_karate.gml: [ 0.43324696]
saved communities detected for network embedded_karate.gml: 4
starting ghsom for: embedded_karate.gml, repeat: 81
running time of algorithm: 58.9930000305
saved nmi score for network embedded_karate.gml: [ 0.44880013]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 82
running time of algorithm: 79.0970001221
saved nmi score for network embedded_karate.gml: [ 0.5294656]
saved communities detected for network embedded_karate.gml: 4
starting ghsom for: embedded_karate.gml, repeat: 83
running time of algorithm: 79.8159999847
saved nmi score for network embedded_karate.gml: [ 0.43324696]
saved communities detected for network embedded_karate.gml: 4
starting ghsom for: embedded_karate.gml, repeat: 84
running time of algorithm: 79.8159999847
saved nmi score for network embedded_karate.gml: [ 0.43324696]
saved communities detected for network embedded_karate.gml: 4
starting ghsom for: embedded_karate.gml, repeat: 85
running time of algorithm: 79.5569999218
saved nmi score for network embedded_karate.gml: [ 0.43324696]
saved communities detected for network embedded_karate.gml: 4
starting ghsom for: embedded_karate.gml, repeat: 86
running time of algorithm: 78.4639999866
saved nmi score for network embedded_karate.gml: [ 0.5294656]
saved communities detected for network embedded_karate.gml: 4
starting ghsom for: embedded_karate.gml, repeat: 87
running time of algorithm: 79.9749999046
saved nmi score for network embedded_karate.gml: [ 0.5294656]
saved communities detected for network embedded_karate.gml: 4
starting ghsom for: embedded_karate.gml, repeat: 88
running time of algorithm: 52.5239999294
saved nmi score for network embedded_karate.gml: [ 0.43852015]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 89
running time of algorithm: 78.5939998627
saved nmi score for network embedded_karate.gml: [ 0.5294656]
saved communities detected for network embedded_karate.gml: 4
starting ghsom for: embedded_karate.gml, repeat: 90
running time of algorithm: 52.1019999981
saved nmi score for network embedded_karate.gml: [ 0.43852015]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 91
running time of algorithm: 79.9899997711
saved nmi score for network embedded_karate.gml: [ 0.5294656]
saved communities detected for network embedded_karate.gml: 4
starting ghsom for: embedded_karate.gml, repeat: 92
running time of algorithm: 51.9699997902
saved nmi score for network embedded_karate.gml: [ 0.43852015]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 93
running time of algorithm: 51.7999999523
saved nmi score for network embedded_karate.gml: [ 0.44880013]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 94
running time of algorithm: 51.8919999599
saved nmi score for network embedded_karate.gml: [ 0.64121264]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 95
running time of algorithm: 79.1979999542
saved nmi score for network embedded_karate.gml: [ 0.52218299]
saved communities detected for network embedded_karate.gml: 4
starting ghsom for: embedded_karate.gml, repeat: 96
running time of algorithm: 79.6919999123
saved nmi score for network embedded_karate.gml: [ 0.58033157]
saved communities detected for network embedded_karate.gml: 4
starting ghsom for: embedded_karate.gml, repeat: 97
running time of algorithm: 79.5549998283
saved nmi score for network embedded_karate.gml: [ 0.5294656]
saved communities detected for network embedded_karate.gml: 4
starting ghsom for: embedded_karate.gml, repeat: 98
running time of algorithm: 52.4930000305
saved nmi score for network embedded_karate.gml: [ 0.43852015]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 99
running time of algorithm: 53.2809998989
saved nmi score for network embedded_karate.gml: [ 0.58842383]
saved communities detected for network embedded_karate.gml: 3
starting ghsom for: embedded_karate.gml, repeat: 100
running time of algorithm: 80.6679999828
saved nmi score for network embedded_karate.gml: [ 0.5294656]
saved communities detected for network embedded_karate.gml: 4
writing nmi scores and running times to file
creating new nmi scores array
creating new running time array
creating new communites detected array
density of network=0.0840824960338
e_sg=0.621979513587
starting ghsom for: embedded_dolphin.gml, repeat: 1
running time of algorithm: 146.127999783
saved nmi score for network embedded_dolphin.gml: [ 0.49585313]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 2
running time of algorithm: 147.223999977
saved nmi score for network embedded_dolphin.gml: [ 0.49609041]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 3
running time of algorithm: 146.337000132
saved nmi score for network embedded_dolphin.gml: [ 0.49450469]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 4
running time of algorithm: 144.277999878
saved nmi score for network embedded_dolphin.gml: [ 0.4917876]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 5
running time of algorithm: 145.457000017
saved nmi score for network embedded_dolphin.gml: [ 0.63614901]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 6
running time of algorithm: 144.950000048
saved nmi score for network embedded_dolphin.gml: [ 0.48984984]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 7
running time of algorithm: 147.417999983
saved nmi score for network embedded_dolphin.gml: [ 0.49609041]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 8
running time of algorithm: 146.046999931
saved nmi score for network embedded_dolphin.gml: [ 0.53135785]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 9
running time of algorithm: 147.161000013
saved nmi score for network embedded_dolphin.gml: [ 0.51999994]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 10
running time of algorithm: 146.198999882
saved nmi score for network embedded_dolphin.gml: [ 0.48984984]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 11
running time of algorithm: 147.046999931
saved nmi score for network embedded_dolphin.gml: [ 0.48984984]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 12
running time of algorithm: 147.250999928
saved nmi score for network embedded_dolphin.gml: [ 0.49788256]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 13
running time of algorithm: 146.097000122
saved nmi score for network embedded_dolphin.gml: [ 0.49609041]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 14
running time of algorithm: 144.775000095
saved nmi score for network embedded_dolphin.gml: [ 0.48707936]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 15
running time of algorithm: 144.491999865
saved nmi score for network embedded_dolphin.gml: [ 0.48390454]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 16
running time of algorithm: 143.407999992
saved nmi score for network embedded_dolphin.gml: [ 0.48984984]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 17
running time of algorithm: 144.183000088
saved nmi score for network embedded_dolphin.gml: [ 0.50423703]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 18
running time of algorithm: 145.611000061
saved nmi score for network embedded_dolphin.gml: [ 0.49609041]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 19
running time of algorithm: 145.237999916
saved nmi score for network embedded_dolphin.gml: [ 0.4865605]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 20
running time of algorithm: 144.851999998
saved nmi score for network embedded_dolphin.gml: [ 0.47649063]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 21
running time of algorithm: 143.921000004
saved nmi score for network embedded_dolphin.gml: [ 0.4865605]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 22
running time of algorithm: 143.541000128
saved nmi score for network embedded_dolphin.gml: [ 0.49609041]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 23
running time of algorithm: 143.919999838
saved nmi score for network embedded_dolphin.gml: [ 0.47675483]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 24
running time of algorithm: 144.905999899
saved nmi score for network embedded_dolphin.gml: [ 0.50563041]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 25
running time of algorithm: 143.937999964
saved nmi score for network embedded_dolphin.gml: [ 0.48984984]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 26
running time of algorithm: 144.703999996
saved nmi score for network embedded_dolphin.gml: [ 0.4865605]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 27
running time of algorithm: 142.519999981
saved nmi score for network embedded_dolphin.gml: [ 0.47675483]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 28
running time of algorithm: 143.718999863
saved nmi score for network embedded_dolphin.gml: [ 0.4865605]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 29
running time of algorithm: 142.950000048
saved nmi score for network embedded_dolphin.gml: [ 0.5057058]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 30
running time of algorithm: 145.697999954
saved nmi score for network embedded_dolphin.gml: [ 0.49788256]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 31
running time of algorithm: 144.839999914
saved nmi score for network embedded_dolphin.gml: [ 0.49609041]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 32
running time of algorithm: 145.128000021
saved nmi score for network embedded_dolphin.gml: [ 0.4865605]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 33
running time of algorithm: 143.738000154
saved nmi score for network embedded_dolphin.gml: [ 0.48390454]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 34
running time of algorithm: 144.088999987
saved nmi score for network embedded_dolphin.gml: [ 0.49585313]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 35
running time of algorithm: 144.606000185
saved nmi score for network embedded_dolphin.gml: [ 0.48390454]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 36
running time of algorithm: 144.45299983
saved nmi score for network embedded_dolphin.gml: [ 0.48984984]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 37
running time of algorithm: 142.927999973
saved nmi score for network embedded_dolphin.gml: [ 0.48707936]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 38
running time of algorithm: 142.45299983
saved nmi score for network embedded_dolphin.gml: [ 0.47649063]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 39
running time of algorithm: 145.40199995
saved nmi score for network embedded_dolphin.gml: [ 0.4865605]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 40
running time of algorithm: 144.614000082
saved nmi score for network embedded_dolphin.gml: [ 0.48984984]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 41
running time of algorithm: 145.00999999
saved nmi score for network embedded_dolphin.gml: [ 0.51999994]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 42
running time of algorithm: 145.05099988
saved nmi score for network embedded_dolphin.gml: [ 0.4865605]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 43
running time of algorithm: 144.272000074
saved nmi score for network embedded_dolphin.gml: [ 0.50423703]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 44
running time of algorithm: 144.414000034
saved nmi score for network embedded_dolphin.gml: [ 0.4917876]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 45
running time of algorithm: 144.680000067
saved nmi score for network embedded_dolphin.gml: [ 0.48390454]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 46
running time of algorithm: 145.269999981
saved nmi score for network embedded_dolphin.gml: [ 0.48984984]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 47
running time of algorithm: 142.928999901
saved nmi score for network embedded_dolphin.gml: [ 0.48390454]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 48
running time of algorithm: 143.141000032
saved nmi score for network embedded_dolphin.gml: [ 0.47649063]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 49
running time of algorithm: 142.92200017
saved nmi score for network embedded_dolphin.gml: [ 0.48952268]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 50
running time of algorithm: 141.889999866
saved nmi score for network embedded_dolphin.gml: [ 0.49609041]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 51
running time of algorithm: 143.845999956
saved nmi score for network embedded_dolphin.gml: [ 0.48707936]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 52
running time of algorithm: 144.411000013
saved nmi score for network embedded_dolphin.gml: [ 0.49788256]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 53
running time of algorithm: 142.357000113
saved nmi score for network embedded_dolphin.gml: [ 0.4865605]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 54
running time of algorithm: 143.014999866
saved nmi score for network embedded_dolphin.gml: [ 0.47675483]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 55
running time of algorithm: 143.364000082
saved nmi score for network embedded_dolphin.gml: [ 0.41803608]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 56
running time of algorithm: 143.088999987
saved nmi score for network embedded_dolphin.gml: [ 0.50423703]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 57
running time of algorithm: 145.281000137
saved nmi score for network embedded_dolphin.gml: [ 0.4865605]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 58
running time of algorithm: 145.076999903
saved nmi score for network embedded_dolphin.gml: [ 0.49609041]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 59
running time of algorithm: 143.59100008
saved nmi score for network embedded_dolphin.gml: [ 0.47675483]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 60
running time of algorithm: 142.437000036
saved nmi score for network embedded_dolphin.gml: [ 0.4917876]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 61
running time of algorithm: 145.363000154
saved nmi score for network embedded_dolphin.gml: [ 0.50423703]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 62
running time of algorithm: 145.518000126
saved nmi score for network embedded_dolphin.gml: [ 0.50563041]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 63
running time of algorithm: 142.246999979
saved nmi score for network embedded_dolphin.gml: [ 0.48984984]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 64
running time of algorithm: 143.49000001
saved nmi score for network embedded_dolphin.gml: [ 0.48756107]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 65
running time of algorithm: 143.707000017
saved nmi score for network embedded_dolphin.gml: [ 0.4865605]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 66
running time of algorithm: 144.390000105
saved nmi score for network embedded_dolphin.gml: [ 0.49450469]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 67
running time of algorithm: 144.505000114
saved nmi score for network embedded_dolphin.gml: [ 0.49609041]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 68
running time of algorithm: 145.460999966
saved nmi score for network embedded_dolphin.gml: [ 0.49609041]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 69
running time of algorithm: 142.256000042
saved nmi score for network embedded_dolphin.gml: [ 0.49609041]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 70
running time of algorithm: 144.549000025
saved nmi score for network embedded_dolphin.gml: [ 0.53533936]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 71
running time of algorithm: 143.914000034
saved nmi score for network embedded_dolphin.gml: [ 0.48984984]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 72
running time of algorithm: 145.415999889
saved nmi score for network embedded_dolphin.gml: [ 0.5057058]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 73
running time of algorithm: 142.852999926
saved nmi score for network embedded_dolphin.gml: [ 0.50563041]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 74
running time of algorithm: 145.782000065
saved nmi score for network embedded_dolphin.gml: [ 0.53492331]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 75
running time of algorithm: 143.153000116
saved nmi score for network embedded_dolphin.gml: [ 0.55696111]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 76
running time of algorithm: 144.328000069
saved nmi score for network embedded_dolphin.gml: [ 0.47675483]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 77
running time of algorithm: 143.309000015
saved nmi score for network embedded_dolphin.gml: [ 0.4865605]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 78
running time of algorithm: 142.011999846
saved nmi score for network embedded_dolphin.gml: [ 0.49788256]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 79
running time of algorithm: 145.746999979
saved nmi score for network embedded_dolphin.gml: [ 0.49609041]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 80
running time of algorithm: 143.975000143
saved nmi score for network embedded_dolphin.gml: [ 0.49585313]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 81
running time of algorithm: 144.656000137
saved nmi score for network embedded_dolphin.gml: [ 0.41784177]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 82
running time of algorithm: 145.679000139
saved nmi score for network embedded_dolphin.gml: [ 0.48984984]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 83
running time of algorithm: 147.559000015
saved nmi score for network embedded_dolphin.gml: [ 0.48548981]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 84
running time of algorithm: 143.334000111
saved nmi score for network embedded_dolphin.gml: [ 0.50423703]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 85
running time of algorithm: 143.932999849
saved nmi score for network embedded_dolphin.gml: [ 0.47675483]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 86
running time of algorithm: 142.43900013
saved nmi score for network embedded_dolphin.gml: [ 0.5057058]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 87
running time of algorithm: 145.285000086
saved nmi score for network embedded_dolphin.gml: [ 0.49609041]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 88
running time of algorithm: 145.192000151
saved nmi score for network embedded_dolphin.gml: [ 0.49585313]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 89
running time of algorithm: 145.85800004
saved nmi score for network embedded_dolphin.gml: [ 0.47675483]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 90
running time of algorithm: 144.483999968
saved nmi score for network embedded_dolphin.gml: [ 0.41803608]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 91
running time of algorithm: 145.854000092
saved nmi score for network embedded_dolphin.gml: [ 0.4865605]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 92
running time of algorithm: 147.07400012
saved nmi score for network embedded_dolphin.gml: [ 0.4865605]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 93
running time of algorithm: 147.30099988
saved nmi score for network embedded_dolphin.gml: [ 0.49992211]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 94
running time of algorithm: 144.436000109
saved nmi score for network embedded_dolphin.gml: [ 0.4917876]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 95
running time of algorithm: 145.450000048
saved nmi score for network embedded_dolphin.gml: [ 0.47675483]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 96
running time of algorithm: 144.687000036
saved nmi score for network embedded_dolphin.gml: [ 0.53533936]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 97
running time of algorithm: 144.148000002
saved nmi score for network embedded_dolphin.gml: [ 0.48952268]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 98
running time of algorithm: 144.709000111
saved nmi score for network embedded_dolphin.gml: [ 0.49609041]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 99
running time of algorithm: 145.582000017
saved nmi score for network embedded_dolphin.gml: [ 0.49609041]
saved communities detected for network embedded_dolphin.gml: 4
starting ghsom for: embedded_dolphin.gml, repeat: 100
running time of algorithm: 145.048000097
saved nmi score for network embedded_dolphin.gml: [ 0.4865605]
saved communities detected for network embedded_dolphin.gml: 4
writing nmi scores and running times to file
creating new nmi scores array
creating new running time array
creating new communites detected array
density of network=0.0807692307692
e_sg=0.620727939546
starting ghsom for: embedded_polbooks.gml, repeat: 1
running time of algorithm: 236.218999863
saved nmi score for network embedded_polbooks.gml: [ 0.52008129]
saved communities detected for network embedded_polbooks.gml: 4
starting ghsom for: embedded_polbooks.gml, repeat: 2
running time of algorithm: 247.178999901
saved nmi score for network embedded_polbooks.gml: [ 0.51076215]
saved communities detected for network embedded_polbooks.gml: 4
starting ghsom for: embedded_polbooks.gml, repeat: 3
running time of algorithm: 248.730000019
saved nmi score for network embedded_polbooks.gml: [ 0.51076215]
saved communities detected for network embedded_polbooks.gml: 4
starting ghsom for: embedded_polbooks.gml, repeat: 4
running time of algorithm: 251.815999985
saved nmi score for network embedded_polbooks.gml: [ 0.51076215]
saved communities detected for network embedded_polbooks.gml: 4
starting ghsom for: embedded_polbooks.gml, repeat: 5
running time of algorithm: 248.60800004
saved nmi score for network embedded_polbooks.gml: [ 0.55233631]
saved communities detected for network embedded_polbooks.gml: 4
starting ghsom for: embedded_polbooks.gml, repeat: 6
running time of algorithm: 248.833000183
saved nmi score for network embedded_polbooks.gml: [ 0.51312341]
saved communities detected for network embedded_polbooks.gml: 4
starting ghsom for: embedded_polbooks.gml, repeat: 7
running time of algorithm: 249.092999935
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running time of algorithm: 250.266000032
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running time of algorithm: 249.60800004
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running time of algorithm: 245.805999994
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running time of algorithm: 245.333999872
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running time of algorithm: 246.428999901
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running time of algorithm: 248.653000116
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running time of algorithm: 249.829999924
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running time of algorithm: 248.812999964
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running time of algorithm: 249.799000025
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starting ghsom for: embedded_polbooks.gml, repeat: 17
running time of algorithm: 248.890000105
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running time of algorithm: 250.357000113
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running time of algorithm: 248.330999851
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running time of algorithm: 247.770999908
saved nmi score for network embedded_polbooks.gml: [ 0.52008129]
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running time of algorithm: 242.93599987
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running time of algorithm: 245.412000179
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running time of algorithm: 244.20600009
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starting ghsom for: embedded_polbooks.gml, repeat: 24
running time of algorithm: 244.31400013
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running time of algorithm: 243.128000021
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starting ghsom for: embedded_polbooks.gml, repeat: 26
running time of algorithm: 245.779000044
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running time of algorithm: 239.200999975
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running time of algorithm: 243.717000008
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running time of algorithm: 243.09100008
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running time of algorithm: 243.188999891
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running time of algorithm: 242.664000034
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running time of algorithm: 242.48300004
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running time of algorithm: 239.894999981
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running time of algorithm: 241.588999987
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running time of algorithm: 242.402000189
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running time of algorithm: 239.006000042
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running time of algorithm: 242.476000071
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running time of algorithm: 240.553999901
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running time of algorithm: 240.115999937
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running time of algorithm: 242.299999952
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running time of algorithm: 241.517999887
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running time of algorithm: 242.556999922
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running time of algorithm: 244.128000021
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running time of algorithm: 242.894000053
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starting ghsom for: embedded_polbooks.gml, repeat: 49
running time of algorithm: 242.273000002
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running time of algorithm: 241.019000053
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running time of algorithm: 240.689999819
saved nmi score for network embedded_polbooks.gml: [ 0.50739484]
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running time of algorithm: 242.161999941
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running time of algorithm: 242.621999979
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running time of algorithm: 241.924999952
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running time of algorithm: 242.156999826
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running time of algorithm: 240.072999954
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running time of algorithm: 242.266000032
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running time of algorithm: 242.2900002
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running time of algorithm: 243.251999855
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running time of algorithm: 243.232000113
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running time of algorithm: 159.562999964
saved nmi score for network embedded_polbooks.gml: [ 0.54834672]
saved communities detected for network embedded_polbooks.gml: 3
starting ghsom for: embedded_polbooks.gml, repeat: 62
running time of algorithm: 240.861999989
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running time of algorithm: 240.339999914
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running time of algorithm: 241.981000185
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running time of algorithm: 239.080000162
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running time of algorithm: 240.713999987
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running time of algorithm: 240.71600008
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running time of algorithm: 240.440000057
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running time of algorithm: 243.240999937
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running time of algorithm: 242.503999949
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running time of algorithm: 242.897000074
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running time of algorithm: 241.480999947
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running time of algorithm: 242.988999844
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running time of algorithm: 240.101000071
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running time of algorithm: 239.495000124
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running time of algorithm: 242.812000036
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running time of algorithm: 242.328999996
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running time of algorithm: 241.776000023
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running time of algorithm: 240.838999987
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running time of algorithm: 241.467000008
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running time of algorithm: 239.457999945
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running time of algorithm: 240.111999989
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running time of algorithm: 240.861000061
saved nmi score for network embedded_polbooks.gml: [ 0.53746942]
saved communities detected for network embedded_polbooks.gml: 4
starting ghsom for: embedded_polbooks.gml, repeat: 88
running time of algorithm: 260.661000013
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saved communities detected for network embedded_polbooks.gml: 4
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running time of algorithm: 241.4150002
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running time of algorithm: 241.042999983
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running time of algorithm: 241.430999994
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running time of algorithm: 242.376000166
saved nmi score for network embedded_polbooks.gml: [ 0.56007797]
saved communities detected for network embedded_polbooks.gml: 4
starting ghsom for: embedded_polbooks.gml, repeat: 93
running time of algorithm: 159.31099987
saved nmi score for network embedded_polbooks.gml: [ 0.5443955]
saved communities detected for network embedded_polbooks.gml: 3
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running time of algorithm: 238.659000158
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running time of algorithm: 241.122000217
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saved communities detected for network embedded_polbooks.gml: 4
starting ghsom for: embedded_polbooks.gml, repeat: 96
running time of algorithm: 238.815000057
saved nmi score for network embedded_polbooks.gml: [ 0.52106516]
saved communities detected for network embedded_polbooks.gml: 4
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running time of algorithm: 239.432999849
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saved communities detected for network embedded_polbooks.gml: 4
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running time of algorithm: 242.031000137
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saved communities detected for network embedded_polbooks.gml: 4
starting ghsom for: embedded_polbooks.gml, repeat: 99
running time of algorithm: 242.489000082
saved nmi score for network embedded_polbooks.gml: [ 0.53683612]
saved communities detected for network embedded_polbooks.gml: 4
starting ghsom for: embedded_polbooks.gml, repeat: 100
running time of algorithm: 240.753999949
saved nmi score for network embedded_polbooks.gml: [ 0.51076215]
saved communities detected for network embedded_polbooks.gml: 4
writing nmi scores and running times to file
creating new nmi scores array
creating new running time array
creating new communites detected array
density of network=0.0939740655988
e_sg=0.625716018425
starting ghsom for: embedded_football.gml, repeat: 1
running time of algorithm: 463.421000004
saved nmi score for network embedded_football.gml: [ 0.74697188]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 2
running time of algorithm: 450.486999989
saved nmi score for network embedded_football.gml: [ 0.74570757]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 3
running time of algorithm: 451.223999977
saved nmi score for network embedded_football.gml: [ 0.74570757]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 4
running time of algorithm: 450.697999954
saved nmi score for network embedded_football.gml: [ 0.73077253]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 5
running time of algorithm: 590.43200016
saved nmi score for network embedded_football.gml: [ 0.74508974]
saved communities detected for network embedded_football.gml: 7
starting ghsom for: embedded_football.gml, repeat: 6
running time of algorithm: 445.695999861
saved nmi score for network embedded_football.gml: [ 0.72049412]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 7
running time of algorithm: 445.920000076
saved nmi score for network embedded_football.gml: [ 0.74749562]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 8
running time of algorithm: 447.743999958
saved nmi score for network embedded_football.gml: [ 0.74540174]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 9
running time of algorithm: 444.678000212
saved nmi score for network embedded_football.gml: [ 0.75120458]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 10
running time of algorithm: 452.227999926
saved nmi score for network embedded_football.gml: [ 0.75120458]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 11
running time of algorithm: 448.197999954
saved nmi score for network embedded_football.gml: [ 0.73099384]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 12
running time of algorithm: 748.424999952
saved nmi score for network embedded_football.gml: [ 0.73183017]
saved communities detected for network embedded_football.gml: 8
starting ghsom for: embedded_football.gml, repeat: 13
running time of algorithm: 590.435000181
saved nmi score for network embedded_football.gml: [ 0.73995116]
saved communities detected for network embedded_football.gml: 7
starting ghsom for: embedded_football.gml, repeat: 14
running time of algorithm: 585.800000191
saved nmi score for network embedded_football.gml: [ 0.7535908]
saved communities detected for network embedded_football.gml: 7
starting ghsom for: embedded_football.gml, repeat: 15
running time of algorithm: 444.231000185
saved nmi score for network embedded_football.gml: [ 0.73066913]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 16
running time of algorithm: 451.838000059
saved nmi score for network embedded_football.gml: [ 0.74556709]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 17
running time of algorithm: 453.77699995
saved nmi score for network embedded_football.gml: [ 0.73940396]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 18
running time of algorithm: 449.56400013
saved nmi score for network embedded_football.gml: [ 0.74697188]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 19
running time of algorithm: 448.053999901
saved nmi score for network embedded_football.gml: [ 0.75211174]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 20
running time of algorithm: 446.401000023
saved nmi score for network embedded_football.gml: [ 0.73258787]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 21
running time of algorithm: 449.404000044
saved nmi score for network embedded_football.gml: [ 0.75211174]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 22
running time of algorithm: 443.641000032
saved nmi score for network embedded_football.gml: [ 0.75864818]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 23
running time of algorithm: 443.099999905
saved nmi score for network embedded_football.gml: [ 0.7167881]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 24
running time of algorithm: 445.104000092
saved nmi score for network embedded_football.gml: [ 0.74629601]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 25
running time of algorithm: 443.258000135
saved nmi score for network embedded_football.gml: [ 0.73077253]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 26
running time of algorithm: 445.264999866
saved nmi score for network embedded_football.gml: [ 0.72900981]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 27
running time of algorithm: 453.936000109
saved nmi score for network embedded_football.gml: [ 0.7535814]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 28
running time of algorithm: 583.288000107
saved nmi score for network embedded_football.gml: [ 0.75013003]
saved communities detected for network embedded_football.gml: 7
starting ghsom for: embedded_football.gml, repeat: 29
running time of algorithm: 443.34800005
saved nmi score for network embedded_football.gml: [ 0.73099384]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 30
running time of algorithm: 450.035000086
saved nmi score for network embedded_football.gml: [ 0.72049412]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 31
running time of algorithm: 453.360999823
saved nmi score for network embedded_football.gml: [ 0.74749562]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 32
running time of algorithm: 444.148000002
saved nmi score for network embedded_football.gml: [ 0.744242]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 33
running time of algorithm: 443.855000019
saved nmi score for network embedded_football.gml: [ 0.70722108]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 34
running time of algorithm: 452.072999954
saved nmi score for network embedded_football.gml: [ 0.70569521]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 35
running time of algorithm: 449.164999962
saved nmi score for network embedded_football.gml: [ 0.74697188]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 36
running time of algorithm: 447.59800005
saved nmi score for network embedded_football.gml: [ 0.7209483]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 37
running time of algorithm: 581.832999945
saved nmi score for network embedded_football.gml: [ 0.69404868]
saved communities detected for network embedded_football.gml: 7
starting ghsom for: embedded_football.gml, repeat: 38
running time of algorithm: 452.944999933
saved nmi score for network embedded_football.gml: [ 0.74749562]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 39
running time of algorithm: 445.282999992
saved nmi score for network embedded_football.gml: [ 0.73077253]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 40
running time of algorithm: 443.368999958
saved nmi score for network embedded_football.gml: [ 0.73066913]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 41
running time of algorithm: 585.642999887
saved nmi score for network embedded_football.gml: [ 0.72378162]
saved communities detected for network embedded_football.gml: 7
starting ghsom for: embedded_football.gml, repeat: 42
running time of algorithm: 447.70600009
saved nmi score for network embedded_football.gml: [ 0.74697188]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 43
running time of algorithm: 579.388999939
saved nmi score for network embedded_football.gml: [ 0.7535908]
saved communities detected for network embedded_football.gml: 7
starting ghsom for: embedded_football.gml, repeat: 44
running time of algorithm: 443.402999878
saved nmi score for network embedded_football.gml: [ 0.73258787]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 45
running time of algorithm: 448.079999924
saved nmi score for network embedded_football.gml: [ 0.70773246]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 46
running time of algorithm: 444.019000053
saved nmi score for network embedded_football.gml: [ 0.73099384]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 47
running time of algorithm: 445.539999962
saved nmi score for network embedded_football.gml: [ 0.73404276]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 48
running time of algorithm: 446.74000001
saved nmi score for network embedded_football.gml: [ 0.70722108]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 49
running time of algorithm: 448.799000025
saved nmi score for network embedded_football.gml: [ 0.74472482]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 50
running time of algorithm: 450.484999895
saved nmi score for network embedded_football.gml: [ 0.71868264]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 51
running time of algorithm: 444.289000034
saved nmi score for network embedded_football.gml: [ 0.71806573]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 52
running time of algorithm: 450.243000031
saved nmi score for network embedded_football.gml: [ 0.71751767]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 53
running time of algorithm: 450.285000086
saved nmi score for network embedded_football.gml: [ 0.74325465]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 54
running time of algorithm: 447.835999966
saved nmi score for network embedded_football.gml: [ 0.7185385]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 55
running time of algorithm: 448.01699996
saved nmi score for network embedded_football.gml: [ 0.74472482]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 56
running time of algorithm: 443.601000071
saved nmi score for network embedded_football.gml: [ 0.70773246]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 57
running time of algorithm: 449.807999849
saved nmi score for network embedded_football.gml: [ 0.74393581]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 58
running time of algorithm: 707.031000137
saved nmi score for network embedded_football.gml: [ 0.73738924]
saved communities detected for network embedded_football.gml: 7
starting ghsom for: embedded_football.gml, repeat: 59
running time of algorithm: 619.612999916
saved nmi score for network embedded_football.gml: [ 0.70722108]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 60
running time of algorithm: 615.990999937
saved nmi score for network embedded_football.gml: [ 0.74413533]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 61
running time of algorithm: 608.214999914
saved nmi score for network embedded_football.gml: [ 0.73258787]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 62
running time of algorithm: 454.855999947
saved nmi score for network embedded_football.gml: [ 0.71751767]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 63
running time of algorithm: 457.661999941
saved nmi score for network embedded_football.gml: [ 0.70722108]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 64
running time of algorithm: 461.60800004
saved nmi score for network embedded_football.gml: [ 0.73404276]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 65
running time of algorithm: 460.835999966
saved nmi score for network embedded_football.gml: [ 0.70821157]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 66
running time of algorithm: 459.196000099
saved nmi score for network embedded_football.gml: [ 0.74749562]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 67
running time of algorithm: 594.595999956
saved nmi score for network embedded_football.gml: [ 0.73738924]
saved communities detected for network embedded_football.gml: 7
starting ghsom for: embedded_football.gml, repeat: 68
running time of algorithm: 455.934999943
saved nmi score for network embedded_football.gml: [ 0.74393581]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 69
running time of algorithm: 606.751999855
saved nmi score for network embedded_football.gml: [ 0.73916499]
saved communities detected for network embedded_football.gml: 7
starting ghsom for: embedded_football.gml, repeat: 70
running time of algorithm: 462.592000008
saved nmi score for network embedded_football.gml: [ 0.74325465]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 71
running time of algorithm: 464.052999973
saved nmi score for network embedded_football.gml: [ 0.73236701]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 72
running time of algorithm: 3436.82800007
saved nmi score for network embedded_football.gml: [ 0.74809465]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 73
running time of algorithm: 462.070999861
saved nmi score for network embedded_football.gml: [ 0.74592634]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 74
running time of algorithm: 457.104000092
saved nmi score for network embedded_football.gml: [ 0.73258787]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 75
running time of algorithm: 454.437000036
saved nmi score for network embedded_football.gml: [ 0.73275273]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 76
running time of algorithm: 458.055000067
saved nmi score for network embedded_football.gml: [ 0.74413533]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 77
running time of algorithm: 456.859999895
saved nmi score for network embedded_football.gml: [ 0.73258787]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 78
running time of algorithm: 456.381999969
saved nmi score for network embedded_football.gml: [ 0.74556709]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 79
running time of algorithm: 454.223999977
saved nmi score for network embedded_football.gml: [ 0.70722108]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 80
running time of algorithm: 457.132999897
saved nmi score for network embedded_football.gml: [ 0.73110737]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 81
running time of algorithm: 455.485000134
saved nmi score for network embedded_football.gml: [ 0.74472482]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 82
running time of algorithm: 459.358999968
saved nmi score for network embedded_football.gml: [ 0.72933692]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 83
running time of algorithm: 462.375
saved nmi score for network embedded_football.gml: [ 0.71976677]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 84
running time of algorithm: 616.61500001
saved nmi score for network embedded_football.gml: [ 0.76688797]
saved communities detected for network embedded_football.gml: 7
starting ghsom for: embedded_football.gml, repeat: 85
running time of algorithm: 602.028999805
saved nmi score for network embedded_football.gml: [ 0.69797732]
saved communities detected for network embedded_football.gml: 7
starting ghsom for: embedded_football.gml, repeat: 86
running time of algorithm: 461.496000051
saved nmi score for network embedded_football.gml: [ 0.74697188]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 87
running time of algorithm: 461.351999998
saved nmi score for network embedded_football.gml: [ 0.7251193]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 88
running time of algorithm: 462.809000015
saved nmi score for network embedded_football.gml: [ 0.74103259]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 89
running time of algorithm: 461.953999996
saved nmi score for network embedded_football.gml: [ 0.71806573]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 90
running time of algorithm: 460.538000107
saved nmi score for network embedded_football.gml: [ 0.74483646]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 91
running time of algorithm: 456.234999895
saved nmi score for network embedded_football.gml: [ 0.71883809]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 92
running time of algorithm: 455.753000021
saved nmi score for network embedded_football.gml: [ 0.74013123]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 93
running time of algorithm: 456.67200017
saved nmi score for network embedded_football.gml: [ 0.7251193]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 94
running time of algorithm: 455.393999815
saved nmi score for network embedded_football.gml: [ 0.74809465]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 95
running time of algorithm: 455.477000237
saved nmi score for network embedded_football.gml: [ 0.74540174]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 96
running time of algorithm: 456.679999828
saved nmi score for network embedded_football.gml: [ 0.72950091]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 97
running time of algorithm: 457.373000145
saved nmi score for network embedded_football.gml: [ 0.72042274]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 98
running time of algorithm: 455.207000017
saved nmi score for network embedded_football.gml: [ 0.72049412]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 99
running time of algorithm: 453.335999966
saved nmi score for network embedded_football.gml: [ 0.73077253]
saved communities detected for network embedded_football.gml: 6
starting ghsom for: embedded_football.gml, repeat: 100
running time of algorithm: 456.376000166
saved nmi score for network embedded_football.gml: [ 0.72636191]
saved communities detected for network embedded_football.gml: 6
writing nmi scores and running times to file
DONE
OVERALL NMI SCORES
[[ 0.5294656 0.64121264 0.43852015 0.43852015 0.5294656 0.44880013
0.46959898 0.43852015 0.4767809 0.5294656 0.44880013 0.5294656
0.43852015 0.5294656 0.5294656 0.52460052 0.4767809 0.58033157
0.44880013 0.5294656 0.43852015 0.52460052 0.44880013 0.59204037
0.43852015 0.44880013 0.52003736 0.52460052 0.43852015 0.5294656
0.52003736 0.46959898 0.5294656 0.58842383 0.62312666 0.47834623
0.43852015 0.5294656 0.44880013 0.43852015 0.52141818 0.43852015
0.43324696 0.5294656 0.52141818 0.43852015 0.52141818 0.44880013
0.5294656 0.43324696 0.44880013 0.58033157 0.52003736 0.64121264
0.5294656 0.59204037 0.52460052 0.52460052 0.58033157 0.43852015
0.52141818 0.44880013 0.52460052 0.46959898 0.52460052 0.43852015
0.43852015 0.62312666 0.43310466 0.52460052 0.58842383 0.43324696
0.44880013 0.52141818 0.43852015 0.62312666 0.44880013 0.43852015
0.5294656 0.43324696 0.44880013 0.5294656 0.43324696 0.43324696
0.43324696 0.5294656 0.5294656 0.43852015 0.5294656 0.43852015
0.5294656 0.43852015 0.44880013 0.64121264 0.52218299 0.58033157
0.5294656 0.43852015 0.58842383 0.5294656 ]
[ 0.49585313 0.49609041 0.49450469 0.4917876 0.63614901 0.48984984
0.49609041 0.53135785 0.51999994 0.48984984 0.48984984 0.49788256
0.49609041 0.48707936 0.48390454 0.48984984 0.50423703 0.49609041
0.4865605 0.47649063 0.4865605 0.49609041 0.47675483 0.50563041
0.48984984 0.4865605 0.47675483 0.4865605 0.5057058 0.49788256
0.49609041 0.4865605 0.48390454 0.49585313 0.48390454 0.48984984
0.48707936 0.47649063 0.4865605 0.48984984 0.51999994 0.4865605
0.50423703 0.4917876 0.48390454 0.48984984 0.48390454 0.47649063
0.48952268 0.49609041 0.48707936 0.49788256 0.4865605 0.47675483
0.41803608 0.50423703 0.4865605 0.49609041 0.47675483 0.4917876
0.50423703 0.50563041 0.48984984 0.48756107 0.4865605 0.49450469
0.49609041 0.49609041 0.49609041 0.53533936 0.48984984 0.5057058
0.50563041 0.53492331 0.55696111 0.47675483 0.4865605 0.49788256
0.49609041 0.49585313 0.41784177 0.48984984 0.48548981 0.50423703
0.47675483 0.5057058 0.49609041 0.49585313 0.47675483 0.41803608
0.4865605 0.4865605 0.49992211 0.4917876 0.47675483 0.53533936
0.48952268 0.49609041 0.49609041 0.4865605 ]
[ 0.52008129 0.51076215 0.51076215 0.51076215 0.55233631 0.51312341
0.52854272 0.50739484 0.52008129 0.51076215 0.51076215 0.51076215
0.51076215 0.5198172 0.51009765 0.51076215 0.51076215 0.51076215
0.51009765 0.52008129 0.51076215 0.51076215 0.51009765 0.51009765
0.51076215 0.51009765 0.51009765 0.51076215 0.5155065 0.51076215
0.51009765 0.55442909 0.51009765 0.5198172 0.5198172 0.51076215
0.53003463 0.51009765 0.51076215 0.51312341 0.51009765 0.51312341
0.51076215 0.51009765 0.56007797 0.51076215 0.51009765 0.51009765
0.53746942 0.51009765 0.50739484 0.53746942 0.51813975 0.51076215
0.51312341 0.54654507 0.51076215 0.51813975 0.51813975 0.51813975
0.54834672 0.51076215 0.55583245 0.5198172 0.51076215 0.51076215
0.56779484 0.55428333 0.51312341 0.50739484 0.51009765 0.51076215
0.51009765 0.51076215 0.55703709 0.5385141 0.51076215 0.51009765
0.51076215 0.51076215 0.51009765 0.51076215 0.51009765 0.51312341
0.51009765 0.51009765 0.53746942 0.51076215 0.51009765 0.51009765
0.51076215 0.56007797 0.5443955 0.51009765 0.51076215 0.52106516
0.51076215 0.51009765 0.53683612 0.51076215]
[ 0.74697188 0.74570757 0.74570757 0.73077253 0.74508974 0.72049412
0.74749562 0.74540174 0.75120458 0.75120458 0.73099384 0.73183017
0.73995116 0.7535908 0.73066913 0.74556709 0.73940396 0.74697188
0.75211174 0.73258787 0.75211174 0.75864818 0.7167881 0.74629601
0.73077253 0.72900981 0.7535814 0.75013003 0.73099384 0.72049412
0.74749562 0.744242 0.70722108 0.70569521 0.74697188 0.7209483
0.69404868 0.74749562 0.73077253 0.73066913 0.72378162 0.74697188
0.7535908 0.73258787 0.70773246 0.73099384 0.73404276 0.70722108
0.74472482 0.71868264 0.71806573 0.71751767 0.74325465 0.7185385
0.74472482 0.70773246 0.74393581 0.73738924 0.70722108 0.74413533
0.73258787 0.71751767 0.70722108 0.73404276 0.70821157 0.74749562
0.73738924 0.74393581 0.73916499 0.74325465 0.73236701 0.74809465
0.74592634 0.73258787 0.73275273 0.74413533 0.73258787 0.74556709
0.70722108 0.73110737 0.74472482 0.72933692 0.71976677 0.76688797
0.69797732 0.74697188 0.7251193 0.74103259 0.71806573 0.74483646
0.71883809 0.74013123 0.7251193 0.74809465 0.74540174 0.72950091
0.72042274 0.72049412 0.73077253 0.72636191]]
[[ 4. 3. 3. 3. 4. 3. 4. 3. 3. 4. 3. 4. 3. 4. 4. 3. 3. 4.
3. 4. 3. 3. 3. 3. 3. 3. 3. 3. 3. 4. 3. 4. 4. 3. 3. 4.
3. 4. 3. 3. 3. 3. 4. 4. 3. 3. 3. 3. 4. 4. 3. 4. 3. 3.
4. 3. 3. 3. 4. 3. 3. 3. 3. 4. 3. 3. 3. 3. 3. 3. 3. 4.
3. 3. 3. 3. 3. 3. 4. 4. 3. 4. 4. 4. 4. 4. 4. 3. 4. 3.
4. 3. 3. 3. 4. 4. 4. 3. 3. 4.]
[ 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4.
4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4.
4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4.
4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4.
4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4.
4. 4. 4. 4. 4. 4. 4. 4. 4. 4.]
[ 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4.
4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4.
4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4.
4. 4. 4. 4. 4. 4. 3. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4.
4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4. 4.
4. 4. 3. 4. 4. 4. 4. 4. 4. 4.]
[ 6. 6. 6. 6. 7. 6. 6. 6. 6. 6. 6. 8. 7. 7. 6. 6. 6. 6.
6. 6. 6. 6. 6. 6. 6. 6. 6. 7. 6. 6. 6. 6. 6. 6. 6. 6.
7. 6. 6. 6. 7. 6. 7. 6. 6. 6. 6. 6. 6. 6. 6. 6. 6. 6.
6. 6. 6. 7. 6. 6. 6. 6. 6. 6. 6. 6. 7. 6. 7. 6. 6. 6.
6. 6. 6. 6. 6. 6. 6. 6. 6. 6. 6. 7. 7. 6. 6. 6. 6. 6.
6. 6. 6. 6. 6. 6. 6. 6. 6. 6.]]
In [2]:
for score in overall_nmi_scores:
mean = np.mean(score)
print mean
se = np.std(score) / np.sqrt(num_repeats)
print se
print
0.500371004372
0.000426054968268
0.523271512179
0.000694054672717
0.516600171505
0.000146423780636
0.738648910478
0.000166885582662
In [3]:
import networkx as nx
G = nx.read_gml('embedded_karate.gml')
print nx.density(G)
print 2.0 * nx.number_of_edges(G) / (nx.number_of_nodes(G) * (nx.number_of_nodes(G) - 1))
0.139037433155
0.139037433155
In [ ]:
Content source: DavidMcDonald1993/ghsom
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