BuildingBatches-checkpoint



In [35]:
import pandas as pd
import numpy as np
import csv
import gc
import os
from sklearn.model_selection import train_test_split
from random import randint

In [2]:
directory='../GeneInteractionsBN Datasets/Batches'
if not os.path.exists(directory):
    os.makedirs(directory)

In [89]:
# Dat Size and proportions
files = pd.DataFrame(np.random.randn(10, 5), columns=['a', 'b', 'c', 'd', 'e'])
directory = '../GeneInteractionsBN Datasets/Labeled/'
data_list = {}
total_size = 0
for filename in os.listdir(directory):
    if filename.endswith(".csv"): 
        print(os.path.join(directory, filename))
        csv = pd.read_csv(filepath_or_buffer=os.path.join(directory, filename),sep=';',header=None)
        key_name = filename.split('.')[0].split('_')[0]
        data_list[key_name]=[len(csv),[]]
        for i in range(0,len(csv)):
            data_list[key_name][1].append(0)
        #print(key_name)
        #print(data_list[key_name])
        total_size = total_size + len(csv)
        #print(total_size)
        del csv
        gc.collect()
        continue
    else:
        continue


../GeneInteractionsBN Datasets/Labeled/LEF1_Target.csv
../GeneInteractionsBN Datasets/Labeled/CTNNB1_Target.csv
../GeneInteractionsBN Datasets/Labeled/Erk_Target.csv
../GeneInteractionsBN Datasets/Labeled/Ikk2_Target.csv
../GeneInteractionsBN Datasets/Labeled/MYC_Target.csv
../GeneInteractionsBN Datasets/Labeled/IRF4_Target.csv
../GeneInteractionsBN Datasets/Labeled/Jnk_Target.csv

In [91]:



0

In [92]:
directory = '../GeneInteractionsBN Datasets/DataGeneCausality/Raw/'

batch_size = 6000
n_loops = int(total_size/batch_size)
for i in range(0,n_loops):
    csv_output = []
    for filename in os.listdir(directory):
        if filename.endswith(".csv"):
            print(os.path.join(directory, filename))
            csv = pd.read_csv(filepath_or_buffer=os.path.join(directory, filename),sep=';')
            key_name = filename.split('.')[0]
            contribution_size = int(data_list[key_name][0]*batch_size/total_size)
            print(contribution_size)
            while contribution_size>0:
                chosen_index = randint(0, data_list[key_name][0]-1)
                if data_list[key_name][1][chosen_index] == 0: # proceeds
                    data_list[key_name][1][chosen_index] = 1 # sets marker
                    contribution_size = contribution_size-1
                    csv_output.append(csv.iloc[chosen_index,:].values)
            del csv
            gc.collect()
            continue
        else:
            continue
    df = pd.DataFrame(data=csv_output)
    df.to_csv('../GeneInteractionsBN Datasets/Batches/'+'batch_'+str(i)+'.csv')
    del csv_output
    del df


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../GeneInteractionsBN Datasets/DataGeneCausality/Raw/IRF4.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Ikk2.csv
1090
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Jnk.csv
1636
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/LEF1.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/MYC.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/CTNNB1.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Erk.csv
1090
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/IRF4.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Ikk2.csv
1090
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Jnk.csv
1636
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/LEF1.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/MYC.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/CTNNB1.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Erk.csv
1090
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/IRF4.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Ikk2.csv
1090
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Jnk.csv
1636
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/LEF1.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/MYC.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/CTNNB1.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Erk.csv
1090
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/IRF4.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Ikk2.csv
1090
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Jnk.csv
1636
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/LEF1.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/MYC.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/CTNNB1.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Erk.csv
1090
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/IRF4.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Ikk2.csv
1090
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Jnk.csv
1636
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/LEF1.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/MYC.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/CTNNB1.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Erk.csv
1090
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/IRF4.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Ikk2.csv
1090
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Jnk.csv
1636
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/LEF1.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/MYC.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/CTNNB1.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Erk.csv
1090
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/IRF4.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Ikk2.csv
1090
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Jnk.csv
1636
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/LEF1.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/MYC.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/CTNNB1.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Erk.csv
1090
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/IRF4.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Ikk2.csv
1090
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Jnk.csv
1636
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/LEF1.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/MYC.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/CTNNB1.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Erk.csv
1090
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/IRF4.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Ikk2.csv
1090
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Jnk.csv
1636
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/LEF1.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/MYC.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/CTNNB1.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Erk.csv
1090
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/IRF4.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Ikk2.csv
1090
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Jnk.csv
1636
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/LEF1.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/MYC.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/CTNNB1.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Erk.csv
1090
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/IRF4.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Ikk2.csv
1090
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Jnk.csv
1636
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/LEF1.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/MYC.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/CTNNB1.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Erk.csv
1090
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/IRF4.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Ikk2.csv
1090
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Jnk.csv
1636
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/LEF1.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/MYC.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/CTNNB1.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Erk.csv
1090
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/IRF4.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Ikk2.csv
1090
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Jnk.csv
1636
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/LEF1.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/MYC.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/CTNNB1.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Erk.csv
1090
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/IRF4.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Ikk2.csv
1090
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Jnk.csv
1636
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/LEF1.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/MYC.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/CTNNB1.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Erk.csv
1090
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/IRF4.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Ikk2.csv
1090
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Jnk.csv
1636
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/LEF1.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/MYC.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/CTNNB1.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Erk.csv
1090
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/IRF4.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Ikk2.csv
1090
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Jnk.csv
1636
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/LEF1.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/MYC.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/CTNNB1.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Erk.csv
1090
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/IRF4.csv
545
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Ikk2.csv
1090
../GeneInteractionsBN Datasets/DataGeneCausality/Raw/Jnk.csv
1636

In [93]:
marked = 0
for key in data_list:
    for i in data_list[key][1]:
        if i==1:
            marked=marked+1
print(marked)


1097268

In [ ]:


In [ ]: